Identification and characterization of Vietnamese coffee bacterial endophytes displaying in vitro antifungal and nematicidal activities.

The endophytic bacteria were isolated from coffee roots and seeds in Vietnam and identified with 16S rDNA sequencing as belonging to the Actinobacteria, Firmicutes and Proteobacteria phyla with the Nocardia, Bacillus and Burkholderia as dominant genera, respectively. Out of the thirty genera recovered from Coffea canephora and Coffea liberica, twelve were reported for the first time in endophytic association with coffee including members of the genera Brachybacterium, Caballeronia, Kitasatospora, Lechevalieria, Leifsonia, Luteibacter, Lysinibacillus, Mycolicibacterium, Nakamurella, Paracoccus, Sinomonas and Sphingobium. A total of eighty bacterial endophytes were characterized in vitro for several plant growth promoting and biocontrol traits including: the phosphate solubilization, the indolic compounds, siderophores, HCN, esterase, lipase, gelatinase and chitinase production. A subset of fifty selected bacteria were tested for their potential as biocontrol agents with in vitro confrontations with the fungal pathogen Fusarium oxysporum as well as the coffee parasitic nematodes Radopholus duriophilus and Pratylenchus coffeae. The three most efficient isolates on F. oxysporum belonging to the Bacillus, Burkholderia, and Streptomyces genera displayed a growth inhibition rate higher than 40%. Finally, five isolates from the Bacillus genus were able to lead to 100% of mortality in 24 h on both R. duriophilus and P. coffeae.

Description of Hoplolaimus bachlongviensis sp. n. (Nematoda: Hoplolaimidae) from banana soil in Vietnam.

BACKGROUND: The genus Hoplolaimus Daday, 1905 belongs to the subfamily Hoplolaimine Filipiev, 1934 of family Hoplolaimidae Filipiev, 1934 (Krall 1990). Daday established this genus on a single female of H. tylenchiformis recovered from a mud hole on Banco Island, Paraguay in 1905 (Sher 1963​, Krall 1990). Hoplolaimus species are distributed worldwide and cause damage on numerous agricultural crops (Luc et al. 1990 Robbins et al. 1998​). In 1992, Handoo and Golden reviewed 29 valid species of genus Hoplolaimus Dayday, 1905 (Handoo and Golden 1992). Siddiqi (2000) recognised three subgenera in Hoplolaimus: Hoplolaimus (Hoplolaimus) with ten species, is characterized by lateral field distinct, with four incisures, excretory pore behind hemizonid; Hoplolaimus (Basirolaimus) with 18 species, is characterized by lateral field with one to three incisures, obliterated, excretory pore anterior to hemizonid, dorsal oesophageal gland quadrinucleate; and Hoplolaimus (Ethiolaimus) with four species is characterized by lateral field with one to three incisures, obliterated; excretory pore anterior to hemizonid, dorsal oesophageal gland uninucleate (Siddiqi 2000). Since then, Hoplolaimus puriensis Ali, Shaheen & Pervez, 2009 has been described (​Ali et al. 2009). Up to now, there have been two species of genus Hoplolaimus reported in Vietnam, viz H. seinhorsti and H. chambus (Nguyen and Nguyen 2000). NEW INFORMATION: Hoplolaimus bachlongviensis sp. n. was isolated from banana soil in Bach Long Vi Island, Vietnam. The female of this species is described and illustrated below. Some diagnostic characters of this species include body slightly curved ventrally, offset lip region exhibiting three to four annules, lateral field reduced, pharyngeal glands with six nuclei, excretory pore anterior to hemizonid, epiptygma absent, intestine not overlapping rectum and male was not found.