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1.
Langmuir ; 29(37): 11681-6, 2013 Sep 17.
Article in English | MEDLINE | ID: mdl-24007413

ABSTRACT

Samples of carboxylate-fluorapatite are prepared with citric, tricarballylic, and glutaric acids under hydrothermal conditions. The size of the hexagonal rods differs significantly for the three samples, of which the citric-acid sample exhibits the smallest dimension along the [h00] direction. The solid-state NMR data reveal that all the citrate molecules of citrate-fluorapatite are in direct contact with the fluorapatite surface and that there are at least two binding modes accounting for the interaction between citrate and fluorapatite surface. In addition to the electrostatic interaction between the carboxylate carbons and the calcium ions, some citrate molecules also form hydrogen bond between the hydroxyl group of citrate and the orthophosphate ion of fluorapatite. This hydrogen-bond interaction is highly ordered and may play an important role in the formation of the spherulites.


Subject(s)
Apatites/chemistry , Citric Acid/chemistry , Phosphates/chemistry , Hydrogen Bonding , Ions/chemistry , Magnetic Resonance Spectroscopy , Models, Molecular , Particle Size , Surface Properties
2.
J Chem Phys ; 137(16): 164201, 2012 Oct 28.
Article in English | MEDLINE | ID: mdl-23126702

ABSTRACT

Constant-time tensor correlation under magic-angle spinning conditions is an important technique in solid-state nuclear magnetic resonance spectroscopy for the measurements of backbone or side-chain torsion angles of polypeptides and proteins. We introduce a general method for the design of constant-time tensor correlation experiments under magic-angle spinning. Our method requires that the amplitude of the average Hamiltonian must depend on all the three Euler angles bringing the principal axis system to the rotor-fixed frame, which is commonly referred to as non-gamma encoding. We abbreviate this novel approach as COrrelation of Non-Gamma-Encoded Experiment (CONGEE), which exploits the orientation-dependence of non-gamma-encoded sequences with respect to the magic-angle rotation axis. By manipulating the relative orientation of the average Hamiltonians created by two non-gamma-encoded sequences, one can obtain a modulation of the detected signal, from which the structural information can be extracted when the tensor orientations relative to the molecular frame are known. CONGEE has a prominent feature that the number of rf pulses and the total pulse sequence duration can be maintained to be constant so that for torsion angle determination the effects of systematic errors owing to the experimental imperfections and/or T(2) effects could be minimized. As a proof of concept, we illustrate the utility of CONGEE in the correlation between the C' chemical shift tensor and the C(α)-H(α) dipolar tensor for the backbone psi angle determination. In addition to a detailed theoretical analysis, numerical simulations and experiments measured for [U-(13)C, (15)N]-L-alanine and N-acetyl-[U-(13)C, (15)N]-D,L-valine are used to validate our approach at a spinning frequency of 20 kHz.


Subject(s)
Alanine/chemistry , Algorithms , Nuclear Magnetic Resonance, Biomolecular/methods , Valine/analogs & derivatives , Carbon Isotopes/analysis , Computer Simulation , Models, Molecular , Nitrogen Isotopes/analysis , Valine/chemistry
3.
J Phys Chem B ; 116(24): 7162-7, 2012 Jun 21.
Article in English | MEDLINE | ID: mdl-22632418

ABSTRACT

The excitation and detection of high-order multiple quantum coherences among (13)C nuclear spins are demonstrated in the samples of [1-(13)C]-L-alanine and (13)C labeled amyloid fibrils at a spinning frequency of 20 kHz. The technique is based on the double-quantum average Hamiltonian prepared by the DRAMA-XY4 pulse sequence. Empirically, we find that multiple supercycles are required to suppress the higher-order effects for real applications. Measurements for the fibril samples formed by the polypeptides of PrP(113-127) provide the first solid-state NMR evidence for the stacking of multiple ß-sheet layers at the structural core of amyloid fibrils.


Subject(s)
Amyloid/chemistry , Nuclear Magnetic Resonance, Biomolecular , Alanine/chemistry , Carbon Isotopes/chemistry , Humans , Prions/chemistry , Protein Structure, Secondary , Quantum Theory
4.
Chem Commun (Camb) ; 48(29): 3515-7, 2012 Apr 11.
Article in English | MEDLINE | ID: mdl-22378139

ABSTRACT

Two new truxene-based 3-dimensional (3-D) molecules self-assembled in cyclohexane to give organogels with vesicular and fibrillar nano-morphologies governed by the substitution pattern of the peripheral alkyl amido side-chains grafted onto the rigid 3-D core.


Subject(s)
Nanostructures/chemistry , Gels , Magnetic Resonance Spectroscopy , Microscopy, Confocal , Microscopy, Electron, Scanning , Microscopy, Electron, Transmission , Powder Diffraction , X-Ray Diffraction
5.
J Magn Reson ; 214(1): 315-8, 2012 Jan.
Article in English | MEDLINE | ID: mdl-22055980

ABSTRACT

We have developed a novel variant of REDOR which is applicable to multiple-spin systems without proton decoupling. The pulse sequence is constructed based on a systematic time displacement of the pi pulses of the conventional REDOR sequence. This so-called time displacement REDOR (td-REDOR) is insensitive to the effect of homonuclear dipole-dipole interaction when the higher order effects are negligible. The validity of td-REDOR has been verified experimentally by the P-31{C-13} measurements on glyphosate at a spinning frequency of 25 kHz. The experimental dephasing curve is in favorable agreement with the simulation data without considering the homonuclear dipole-dipole interactions.


Subject(s)
Algorithms , Artifacts , Magnetic Resonance Spectroscopy/methods , Nuclear Magnetic Resonance, Biomolecular/methods , Signal Processing, Computer-Assisted , Spin Labels
6.
Biochemistry ; 50(32): 6815-23, 2011 Aug 16.
Article in English | MEDLINE | ID: mdl-21749158

ABSTRACT

Steric zippers, where the residues of two neighboring ß-sheet layers are tightly interdigitated, have been proposed as fundamental structural units of amyloid fibrils by Eisenberg and co-workers. The steric zipper formed by polypeptides containing the palindromic sequence AGAAAAGA has a distinctive feature that the distance between two interdigitated ß-sheet layers is comparable to the interstrand distance of the individual ß-sheet. This structural motif is of great interest in the study of prion disease because the AGAAAAGA sequence is highly conserved in prion proteins of different species. In this work, the amyloid fibrils formed by the polypeptides of PrP(113-127), viz. Ac-AGAAAAGAVVGGLGG-NH(2), are taken as the model compound to investigate the biophysical principles governing the steric zipper formation. The target fibrils adopt the structural motif of class 7 steric zipper, which is formed by stacking of antiparallel ß-sheet layers with residue 117 + k forming backbone hydrogen bonds to residue 120 - k. Implication of our results in the infectivity of scrapie prion is briefly discussed.


Subject(s)
Peptide Fragments/chemistry , Prions/chemistry , Amino Acid Sequence , Animals , Cricetinae , Mesocricetus , Microscopy, Electron, Transmission , Models, Molecular , Molecular Sequence Data , Nuclear Magnetic Resonance, Biomolecular , Spectroscopy, Fourier Transform Infrared
7.
Solid State Nucl Magn Reson ; 38(2-3): 58-61, 2010.
Article in English | MEDLINE | ID: mdl-20817415

ABSTRACT

We show that rotational echo double resonance (REDOR) experiments can be carried out without proton decoupling under the conditions of fast spinning and strong rf field. Numerical simulations on a five-spin systems show that no significant attenuation of the reference signal (S(0)) is observed at a spin rate of 25 kHz, provided that the rf power is larger than 100 kHz. This approach has been validated by (31)P{(13)C} REDOR measurements on isotopically labeled glyphosate. The obtained van Vleck's second moment is in favorable agreement with the value calculated based on the crystal structure.


Subject(s)
Magnetic Resonance Spectroscopy/methods , Protons , Rotation , Crystallography, X-Ray , Glycine/analogs & derivatives , Glycine/chemistry , Kinetics , Models, Molecular , Molecular Conformation , Reproducibility of Results , Glyphosate
8.
Phys Chem Chem Phys ; 12(25): 6692-7, 2010 Jul 07.
Article in English | MEDLINE | ID: mdl-20422114

ABSTRACT

Octacalcium phosphate (OCP) is an important model compound in the study of biomineralization. The octacalcium phosphate-succinate (OCPS) compound is prepared and characterized by (31)P solid-state NMR spectroscopy. Taking advantage of the fact that the crystal structures of OCP and OCPS are very similar, an NMR strategy based on the (31)P homonuclear double-quantum spectroscopy is developed to assign all the peaks observed in the (31)P magic-angle spinning spectrum of OCPS. On the basis of our experimental data, the molecular formula of OCPS is determined to be Ca(7.81)(HPO(4))(1.82)(PO(4))(3.61)(succinate)(0.56).zH(2)O, where z

Subject(s)
Calcium Phosphates/chemistry , Magnetic Resonance Spectroscopy , Succinic Acid/chemistry , Hydrogen-Ion Concentration , Hydrolysis , Phosphorus Isotopes/chemistry
9.
Solid State Nucl Magn Reson ; 36(4): 177-81, 2009 Dec.
Article in English | MEDLINE | ID: mdl-19962863

ABSTRACT

The DRAMA sequence has been considered as the milestone in the development of homonuclear dipolar recoupling. Although it has a high efficiency for double-quantum excitation in spin 1/2 systems, it is seldom used today for real applications because of its susceptibility to the deteriorating effects of chemical shift anisotropy and resonance offsets. We show in this work that the practicability of DRAMA can be greatly enhanced by incorporating four pi pulses with XY-4 phases into the basic DRAMA cycles. Average Hamiltonian theory is used to evaluate the performance of the resulting pulse sequence with respect to the compensation of chemical shift anisotropy. Numerical simulations and experimental measurements on hydroxyapatite indeed show that the performance of DRAMA-XY4 is very satisfying for 31P DQ excitation, provided that the resonance offset is within the range of [-4, 4]kHz.

10.
Magn Reson Chem ; 46(4): 330-4, 2008 Apr.
Article in English | MEDLINE | ID: mdl-18306172

ABSTRACT

We demonstrate that glutaric acid can be used to prepare nanorods of hydroxyapatite under hydrothermal condition at 100 degrees C with a Ca(2+):glutaric acid molar ratio of 1:4. Frequency-switched Lee-Goldburg irradiation is employed to obtain high-resolution (31)P{(1)H} correlation spectra of the reaction mixture at two different reaction periods, from which it is shown that octacalcium phosphate is the precursor phase of the final hydroxyapatite product. In addition, the spectra show that a substantial amount of water molecules is trapped between the glutaric acid and the hydroxyapatite surface, indicating that water molecules may play a prominent role in the noncovalent interaction of the glutaric acid and the HAp surface.


Subject(s)
Durapatite/chemistry , Durapatite/chemical synthesis , Glutarates/chemistry , Magnetic Resonance Spectroscopy/methods , Magnetic Resonance Spectroscopy/standards , Microscopy, Electron, Scanning , Particle Size , Phosphorus Isotopes , Reference Standards , X-Ray Diffraction
11.
Solid State Nucl Magn Reson ; 31(2): 72-81, 2007 Apr.
Article in English | MEDLINE | ID: mdl-17329083

ABSTRACT

We demonstrate that the backbone torsion psi angle of a uniformly labeled residue can be determined accurately by correlating the chemical shift anisotropy of the carbonyl carbon and the 13C-1H heteronuclear dipole-dipole interaction of the alpha carbon. To obtain the highest sensitivity for the psi angle determination, the following conditions are desired: (i) the recoupling pulse sequences for the CSA and the heteronuclear dipolar interactions are gamma encoded, in which the spatial parts of m=2 are selected; (ii) the homonuclear polarization transfer is based on the scalar spin-spin coupling. Experimental data were obtained for [U-13C, 15N]-alanine and N-acetyl-[U-13C, 15N]-d,l-valine under magic-angle spinning at 25kHz. Only three data points are required for the measurements and the dihedral angles determined are in excellent agreement with the diffraction data.


Subject(s)
Alanine/chemistry , Nuclear Magnetic Resonance, Biomolecular/methods , Valine/chemistry , Anisotropy , Carbon Isotopes , Nitrogen Isotopes
12.
Solid State Nucl Magn Reson ; 31(1): 55-61, 2007 Feb.
Article in English | MEDLINE | ID: mdl-17276042

ABSTRACT

We present a simple experimental method to extract the van Vleck second moment of a multiple-spin system under high-resolution condition. The idea is to incorporate a double-quantum (DQ) filter into the pulse sequence of heteronuclear correlation spectroscopy so that a DQ excitation profile can be obtained by measuring a series of 2D spectra. The effects of spinning frequency and proton decoupling are demonstrated on the measurements of two model compounds, viz. hydroxyapatite and brushite. Based on the results obtained for the model compounds, the P-31 homonuclear second moment of the apatite component in rat dentin is characterized. The method is generally suited for the study of bone, enamel and dentin.


Subject(s)
Dentin/chemistry , Durapatite/chemistry , Incisor/chemistry , Models, Biological , Models, Chemical , Nuclear Magnetic Resonance, Biomolecular/methods , Animals , Computer Simulation , In Vitro Techniques , Rats , Rats, Wistar , Reproducibility of Results , Sensitivity and Specificity , Spin Labels
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