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1.
J Phys Chem A ; 125(34): 7457-7472, 2021 Sep 02.
Article in English | MEDLINE | ID: mdl-34415753

ABSTRACT

A comprehensive exploration of the anomeric and Perlin effects in a series of 2-substituted-2-fluorotetrahydro-2H-pyrans employing sensitive structural, energetic, and NMR probes calculated by density functional theory (DFT) and natural bond orbital (NBO) approaches is undertaken. We used a wide variety of X substituents exhibiting diverse electronic features (σ-donors, σ-donors/π-donors, and σ-donors/π-acceptors). It is noteworthy that a group of 8 substituents (NHMe, SCN, OBr, NO3, OCl, Cl, OF, and Br) favor the axial conformations, while a group of 13 substituents (NO2, NF2, NH2, CN, SH, H, N3, B(OH)2, OMe, BH2, OH, Me, and Ph) favor the equatorial conformations. Interestingly, a group of 6 substituents (NH2, NHMe, NF2, OF, OCl, and OBr) are responsible for the observed normal Perlin effect while the remaining 16 substituents induce the reverse Perlin effect. An exhaustive investigation of possible correlations of anomeric and Perlin effect descriptors with structural, energetic, one-bond 1JC-F couplings and the nucleophilicity of X descriptors demonstrated the general relationship of the Perlin and anomeric effects and manifested their common stereoelectronic origin.

2.
Org Biomol Chem ; 19(5): 1066-1082, 2021 02 11.
Article in English | MEDLINE | ID: mdl-33427840

ABSTRACT

Mechanistic studies of the thermal amine-promoted isomerization of oxazinane rings by DFT methods showed that the isomerization proceeds through abstraction of the C-3 hydrogen atom by the amine nitrogen atom followed by its re-recruitment from C-3 that helps the oxazinane ring to avoid breaking, leading to the same or an isomeric conformer. Calculations also provided evidence that steric effects are responsible for the breaking of the O-N bond in the transition state of the thermal amine-promoted transformations of oxazinane rings, leading to the transformation of the 6-membered ring to a 5-membered ring. Extensive computational studies of the origin of the anomeric effect in the di-substituted oxazinane rings, bearing the EtO substituent at C-6 and CO2Et at C-3, and a series of analogous tetrahydro-2H-pyran ring conformers, revealed that the conformational preferences in both series of compounds are tuned by the balance of non-covalent (weak vDW, dipole-dipole, electrostatic forces, hydrogen bonding) steric effects and hyperconjugative interactions.


Subject(s)
Density Functional Theory , Oxazines/chemistry , Hydrogen Bonding , Isomerism , Models, Molecular , Molecular Conformation , Static Electricity
3.
J Comput Chem ; 33(20): 1689-700, 2012 Jul 30.
Article in English | MEDLINE | ID: mdl-22539355

ABSTRACT

A detailed analysis of the reaction profiles of the hydroamination reaction between ethylene and ammonia catalyzed by the diplatinum(II) [{Pt(NH(2))(µ-H)(PPh(3))}(2)] complex is presented herein using density functional theory computational techniques. The coordinatively unsaturated 14e T-shaped [Pt(NH(2))(PPh(3))H] species resulted from the dissociation of the diplatinum [{Pt(NH(2))(µ-H)(PPh(3))}(2)] precatalyst are identified as the active catalytic species. All possible reaction pathways that constitute the entire catalytic cycle have exhaustively been investigated. Overall, the rate-determining step of all catalytic cycles constructed was found to be the oxidative addition of ammonia that leads to the regeneration of the catalyst. According to the energy span model, the outer-sphere mechanism for the hydroamination of ethylene with ammonia catalyzed by the diplatinum complexes is favored over the inner-sphere one, whereas TOF values are in favor of the inner-sphere mechanism.

4.
J Comput Chem ; 32(7): 1241-61, 2011 May.
Article in English | MEDLINE | ID: mdl-21425282

ABSTRACT

The structural, electronic, bonding, magnetic, and optical properties of bimetallic [Cu(n)Ru(m)](+/0/-) (n + m ≤ 3; n, m = 0-3) clusters were computed in the framework of the density functional theory (DFT) and time-dependent DFT (TD-DFT) using the full-range PBE0 nonlocal hybrid GGA functional combined with the Def2-QZVPP basis sets. Several low-lying states have been investigated and the stability of the ground state spinomers was estimated with respect to all possible fragmentation schemes. Molecular orbital and population analysis schemes along with computed electronic parameters illustrated the details of the bonding mechanisms in the [Cu(n Ru(m)](+/0/-) clusters. The TD-DFT computed UV-visible absorption spectra of the bimetallic clusters have been fully analyzed and assignments of all principal electronic transitions were made and interpreted in terms of contribution from specific molecular orbital excitations.


Subject(s)
Copper/chemistry , Quantum Theory , Ruthenium/chemistry , Electrons , Molecular Structure , Optical Phenomena
5.
J Comput Chem ; 31(16): 2836-52, 2010 Dec.
Article in English | MEDLINE | ID: mdl-20928847

ABSTRACT

The structural, electronic, bonding, magnetic, and optical properties of bimetallic [Ru(n)Au(m)](0/+) (n + m ≤ 3; n, m = 0-3) clusters were computed in the framework of the density functional theory (DFT) and time-dependent DFT (TD-DFT) using the full-range PBE0 non local hybrid GGA functional combined with the Def2-QZVPP basis sets. Several low-lying states have been investigated and the stability of the ground state spinomers was estimated with respect to all possible fragmentation schemes. Molecular orbital and population analysis schemes along with computed electronic parameters illustrated the details of the bonding mechanisms in the [Ru(n)Au(m)](0/+) clusters. The TD-DFT computed UV-visible absorption spectra of the bimetallic clusters have been fully analyzed and compared to those of pure gold and ruthenium clusters. Assignments of all principal electronic transitions are given and interpreted in terms of contribution from specific molecular orbital excitations.

6.
J Comput Chem ; 31(2): 431-46, 2010 Jan 30.
Article in English | MEDLINE | ID: mdl-19499535

ABSTRACT

Magnetoresponsive three-membered rings of d- and f-block elements have been thoroughly investigated with the help of electronic structure calculation methods. The magnetic response of the clusters was evaluated by the Nucleus Independent Chemical Shifts (NICS)(zz)-scan curves, which in conjunction with symmetry-based selection rules for the most significant translationally and rotationally allowed transitions helped rationalize and predict the orbital-type of aromaticity/antiaromaticity of the clusters. The magnetoresponsive early (Groups 3, 4, and 5) transition metal M(3) rings exhibit successive aromatic and antiaromatic zones separated by a nodal plane. The magnetoresponsive late (Groups 11 and 12) transition metal M(3) rings exhibit long-range aromatic zone with the NICS(zz)(R) values decaying rapidly and monotonically with respect to R. The magnetic response of Group 10 transition metal M(3) rings is similar to that of the early transition metal M(3) rings, but it is long-range antiaromatic only for the [c-Ni(3)] cluster. The NICS(zz)-scan curve of the [(H(t)La)(3)(mu(2)-H)(6)] cluster is indicative of weak pure sigma-aromaticity due to the induced diatropic ring current from the translationally allowed a(1)(') --> e' and e' --> a(1)(') transitions. The aromatic-antiaromatic behavior of the [(H(t)Ce)(3)(mu(2)-H)(6)](+) and [(H(t)Tm)(3)(mu(2)-H)(6)](2-) clusters is similar to that of the early d-block elements. The magnetic response of [(H(t)Yb)(3)(mu(2)-H)(6)](3-) is similar to that of [c-Hg(3)](2-). The [(H(t)Lu)(3)(mu(2)-H)(6)] cluster can be considered as a doubly (sigma + pi) aromatic system, with the sigma-aromatic component being much stronger than the pi-aromatic one. Finally, the [(X(t)Re)(3)(mu(2)-X)(6)] and [(X(t)Ru)(3)(mu(2)-X)(6)](+) (X = Cl, Br, I) clusters exhibit significant aromatic character with the greatest contribution to the induced diatropic ring currents coming from pi-type transitions.

7.
J Am Chem Soc ; 130(28): 9144-55, 2008 Jul 16.
Article in English | MEDLINE | ID: mdl-18570422

ABSTRACT

The molecular and electronic structures, stabilities, bonding features and magnetic properties of prototypical planar isocyclic cyclo-U n X n ( n = 3, 4; X = O, NH) and heterocyclic cyclo-U n (mu 2-X) n ( n = 3, 4; X = C, CH, NH) clusters as well as the E@[ c-U 4(mu 2-C) 4], (E = H (+), C, Si, Ge) and U@[ c-U 5(mu 2-C) 5] molecules including a planar tetracoordinate element E (ptE) and pentacoordinate U (ppU) at the ring centers, respectively, have been thoroughly investigated by means of electronic structure calculation methods at the DFT level. It was shown that 5f orbitals play a key role in the bonding of these f-block metal systems significantly contributing to the cyclic electron delocalization and the associated magnetic diatropic (magnetic aromaticity) response. The aromaticity of the perfectly planar cyclo-U n X n ( n = 3, 4; X = O, NH), cyclo-U n (mu 2-X) n ( n = 3, 4; X = C, CH, NH), E@[ c-U 4(mu 2-C) 4], (E = H (+), C, Si, Ge) and U@[ c-U 5(mu 2-C) 5] clusters was verified by an efficient and simple criterion in probing the aromaticity/antiaromaticity of a molecule, that of the nucleus-independent chemical shift, NICS(0), NICS(1), NICS zz (0) and the most refined NICS zz (1) index in conjunction with the NICS scan profiles. Natural bond orbital analyses provided a clear picture of the bonding pattern in the planar isocyclic and heterocyclic uranium clusters and revealed the features that stabilize the ptE's inside the six- and eight-member uranacycle rings. The ptE's benefit from a considerable electron transfer from the surrounding uranium atoms in the E@[ c-U 4(mu 2-C) 4], (E = H (+), C, Si, Ge) and U@[ c-U 5(mu 2-C) 5] clusters justifying the high occupancy of the np orbitals of the central atom E.

8.
J Comput Chem ; 29(14): 2382-96, 2008 Nov 15.
Article in English | MEDLINE | ID: mdl-18452127

ABSTRACT

The catalytic efficiency of Fe(+) ion over the CO(2) decomposition in the gas phase has been extensively investigated with the help of electronic structure calculation methods. Potential-energy profiles for the activation process Fe(+) + CO(2) --> CO + FeO(+) along two rival potential reaction paths, namely the insertion and addition pathways, originating from the end-on kappa(1)-O and kappa(2)-O,O coordination modes of CO(2) with the metal ion, respectively, have been explored by DFT calculations. For each pathway the potential energy surfaces of the high-spin sextet (S = 5/2) and the intermediate-spin quartet (S = 3/2) spin-states have been explored. The complete energy reaction profile calculated by a combination of ab initio and density functional theory (DFT) computational techniques reveals a two-state reactivity, involving two spin inversions, for the decomposition process and accounts well for the experimentally observed inertness of bare Fe(+) ions towards CO(2) activation. Furthermore, the coordination of up to three extra ancillary NH(3) ligands with the Fe(+) metal ion has been explored and the geometric and energetic reaction profiles of the CO(2) activation processes Fe(+) + n x NH(3) + CO(2) --> [Fe(NH(3))(n)(CO(2))](+) --> [Fe(NH(3))(n)(O)(CO)](+) --> CO + [Fe(O)(NH(3))(n)](+) (n = 1, 2 or 3) have thoroughly been scrutinized for both the insertion and the addition mechanisms. Inter alia, the geometries and energies of the various states of the [Fe(NH(3))(n)(CO(2))](+) and [Fe(NH(3))(n)(O)(CO)](+) complexes are explored and compared. Finally, a detailed analysis of the coordination modes of CO(2) in the cationic [Fe(NH(3))(n)(CO(2))](+) (n = 0, 1, 2 and 3) complexes is presented.

9.
J Am Chem Soc ; 129(45): 13905-22, 2007 Nov 14.
Article in English | MEDLINE | ID: mdl-17956091

ABSTRACT

The molecular and electronic structures, stabilities, bonding features, and spectroscopic properties of prototypical ligand stabilized [cyclo-Ru3(mu2-X)3]0,3+ (X = H, BH, CH2, NH2, OH, Cl, NH, CO, O, PH2, CF2, CCl2, CNH, N3) isocycles have been thoroughly investigated by means of electronic structure calculation methods at the DFT level of theory. All [cyclo-Ru3(mu2-X)3]0,3+ species, except [cyclo-Ru3(mu2-H)3]3+, are predicted to be aromatic molecules. In contrast, the [cyclo-Ru3(mu2-H)3]3+ species exhibits a high antiaromatic character, which would be responsible for the well-established peculiar reaction field of hydrido-bridged triruthenium core structures. The aromaticity/antiaromaticity of the model [cyclo-Ru3(mu2-X)3]0,3+ isocycles was verified by an efficient and simple criterion in probing the aromaticity/antiaromaticity of a molecule, that of the nucleus-independent chemical shift, NICS(0), NICS(1), NICS(-1), NICSzz(1), and NICSzz(-1), along with the NICS scan profiles. The versatile chemical reactivity of the antiaromatic [cyclo-Ru3(mu2-H)3]3+ molecule related to the activation of small molecules that leads to the breaking of various strong single and double bonds is thoroughly investigated by means of electronic structure computational techniques, and the mechanistic details for a representative activation process, that of the dehydrogenation of NH3, to form a triply bridging imido-group (mu3-NH) face-capping the Ru3 ring are presented. Finally, the molecular and electronic structures, stabilities, and bonding features of a series of [cyclo-Ru3(mu2-H)3(mu3-Nuc)]0,1,2+ (Nuc = BH, BCN, BOMe, C4-, CH3-, CMe3-, N3-, NH, N3-, NCO-, OCN-, NCS-, O2-, S2-, OH-, P3-, POH2-, Cl-, O22-, NCH, AlMe, GaMe, C6H6, and cyclo-C3H2Me) products formed upon reacting the archetype [cyclo-Ru3(mu2-H)3]3+ molecule with the appropriate substrates are also comprehensibly analyzed.


Subject(s)
Organometallic Compounds/chemistry , Ruthenium/chemistry , Magnetic Resonance Spectroscopy/methods , Models, Chemical , Models, Molecular , Organometallic Compounds/chemical synthesis
10.
J Comput Chem ; 28(11): 1893-908, 2007 Aug.
Article in English | MEDLINE | ID: mdl-17405112

ABSTRACT

Bimetallic Cu(3)Au(3) clusters have been investigated using electronic structure calculation techniques (DFT) to understand their electronic, magnetic, and optical properties as well as the geometrical structures. The most stable homotop is the planar cyclo-[Cu(3)(micro-Au)(3)] form consisting of a triangular positively charged Cu(3) structural core with negatively charged Au atoms occupying exposed positions. This structure is characterized by the maximum number of heterobonds and peripheral positions of Au atoms. Possible growth formats of the cyclo-[Cu(3)(micro-Au)(3)] homotops have been explored following both the edge-capping and the stepwise metal atom substitution mechanism. The bonding pattern along with the density of states (DOS) plots of the cyclo-[Cu(3)(micro-Au)(3)] homotop are thoroughly analyzed and compared with those of the pure cyclo-[Cu(3)(micro-Cu)(3)] and cyclo-[Au(3)(micro-Au)(3)] clusters. Particular attention was paid on the stability of these bimetallic clusters in relation with the ring-shaped electron density distribution (aromaticity). It was found that all 3-membered metal rings exhibit significant aromatic character, which was verified by a number of established criteria of aromaticity, such as structural, energetic, magnetic (NICS profiles), and out-of-plane ring deformability criteria. The NICS (1) values correlate well with the out-of-plane ring deformation energy. Finally, a comprehensive analysis of the optical spectra of the CuAu, Cu(2), and Au(2) diatomics and the cyclo-[Cu(3)(micro-Au)(3)], cyclo-[Cu(3)(micro-Cu)(3)], and cyclo-[Au(3)(micro-Au)(3)] clusters placed the electronic assignments of the optical transitions on a firm footing.


Subject(s)
Copper/chemistry , Gold/chemistry , Magnetics , Optics and Photonics , Cyclization , Models, Molecular
11.
J Am Chem Soc ; 127(30): 10623-38, 2005 Aug 03.
Article in English | MEDLINE | ID: mdl-16045350

ABSTRACT

Electronic structure calculations (DFT) suggest that ligand-stabilized three-membered gold(I) rings constituting the core structure in a series of cyclo-Au3L(n)H(3-n) (L = CH3, NH2, OH and Cl; n = 1, 2, 3) molecules exhibit aromaticity, which is primarily due to 6s and 5d cyclic electron delocalization over the triangular Au3 framework (s- and d-orbital aromaticity). The aromaticity of the novel triangular gold(I) isocycles was verified by a number of established criteria of aromaticity. In particular, the nucleus-independent chemical shift, NICS(0), the upfield changes in the chemical shifts for Li+, Ag+, and Tl+ cations over the Au3 ring plane, and their interaction with electrophiles (e.g., H+, Li+, Ag+, and Tl+) are indicative for the aromaticity of the three-membered gold(I) rings. Interestingly, unlike the respective substituted derivatives of cyclopropenium cation and the bora-cyclopropene carbacyclic analogues, the aromatic Au3 rings, although exhibit comparable diatropicity, react with electrophiles in a different way affording 1:1 and 2:1 sandwichlike complexes. The bonding in the three-membered gold(I) rings is characterized by a common ring-shaped electron density, more commonly seen in aromatic organic molecules and in "all-metal" aromatics, such as the cyclo-[Hg3]4- tetraanion. Moreover, the cation-pi interactions in the 1:1 and 1:2 sandwichlike complexes formed upon reacting the Au3 rings with electrophiles, depending on the nature of the cation, are predicted to be predominantly electrostatic (Li+, Tl+) or covalent (H+, Ag+). The 1:2 complexes constitute a new class of sandwichlike complexes, which are expected to have novel properties and applications.

13.
J Phys Chem A ; 109(38): 8560-7, 2005 Sep 29.
Article in English | MEDLINE | ID: mdl-16834254

ABSTRACT

The mechanism of the noncatalyzed and reagent-catalyzed Bazarov synthesis of urea has extensively been investigated in the gas phase by means of density functional (B3LYP/6-31G(d,p)) and high quality ab initio (CBS-QB3) computational techniques. It was found that the first step of urea formation from NH3(g) and CO2(g) corresponds to a simple addition reaction leading to the carbamic acid intermediate, a process being slightly endothermic. Among the three possible reaction mechanisms considered, the addition-elimination-addition (AEA) and the double addition-elimination (DAE) mechanisms are almost equally favored, while the concerted (C) one was predicted kinetically forbidden. The second step involves the formation of loose adducts between NH3 and carbamic acid corresponding to an ammonium carbamate intermediate, which subsequently dehydrates to urea. The formation of "ammonium carbamate" corresponds to an almost thermoneutral process, whereas its dehydration, which is the rate-determining step, is highly endothermic. The Bazarov synthesis of urea is strongly assisted by the active participation of extra NH3 or H2O molecules (autocatalysis). For all reaction pathways studied the entire geometric and energetic profiles were computed and thoroughly analyzed. The reaction scheme described herein can be related with the formation of both isocyanic acid, H-N=C=O, and carbamic acid, H2N-COOH, as key intermediates in the initial formation of organic molecules, such as urea, under prebiotic conditions.


Subject(s)
Ammonia/chemistry , Carbon Dioxide/chemistry , Computer Simulation , Models, Chemical , Urea/chemical synthesis , Catalysis , Electrons , Hydrolysis , Hydrophobic and Hydrophilic Interactions , Urea/chemistry
14.
J Am Chem Soc ; 126(40): 12916-29, 2004 Oct 13.
Article in English | MEDLINE | ID: mdl-15469289

ABSTRACT

Quantum chemical calculations suggest that a series of molecules with the general formula cyclo-Mn(mu-H)n (M = Ag, Au; n = 3-6) are stable. All cyclo-MnHn species, except cyclo-Au(3)H(3), have the same symmetry with the respective aromatic hydrocarbons but differ in that the hydrogen atoms are in bridging positions between the metal atoms and not in terminal positions. The aromaticity of the hydrosilver(I) and hydrogold(I) analogues of aromatic hydrocarbons was verified by a number of established criteria of aromaticity, such as structural, energetic, magnetic, and chemical criteria. In particular, the nucleus-independent chemical shift, the relative hardness, Deltaeta, the electrophilicity index, omega, and the chemical reactivity toward electrophiles are indicative for the aromaticity of the hydrosilvers(I) and hydrogolds(I). A comprehensive study of the structural, energetic, spectroscopic (IR, NMR, electronic, and photoelectron spectra), and bonding properties of the novel classes of inorganic compounds containing bonds that are characterized by a common ring-shaped electron density, more commonly seen in organic molecules, is presented.

15.
Chemistry ; 9(17): 4094-105, 2003 Sep 05.
Article in English | MEDLINE | ID: mdl-12953195

ABSTRACT

The neutral, five-coordinate platinum nitrosyl compounds [Pt(C(6)F(5))(3)(L)(NO)] (2) [L=CNtBu (2 a), NC(5)H(4)Me-4 (2 b), PPhMe(2) (2 c), PPh(3) (2 d) and tht (2 e)] have been prepared by the reaction of [NBu(4)][Pt(C(6)F(5))(3)(L)] (1) with NOClO(4) in CH(2)Cl(2). The ionic compound [N(PPh(3))(2)][Pt(C(6)F(5))(4)(NO)] (4) has been prepared in a similar way starting from the homoleptic species [N(PPh(3))(2)](2)[Pt(C(6)F(5))(4)] (3). Compounds 2 and 4 are all diamagnetic with [PtNO](8) electronic configuration and show nu(NO) stretching frequencies at around 1800 cm(-1). The crystal and molecular structures of 2 c and 4 have been established by X-ray diffraction methods. The coordination environment for the Pt center in both compounds can be described as square pyramidal (SPY-5). Bent nitrosyl coordination is observed in both cases with Pt-N-O angles of 120.1(6) and 130.2(7) degrees for 2 c and 4, respectively. The bonding mechanism of the nitrosyl ligand coordinated to various model [Pt(II)R(4)](2-) (R=H, Me, Cl, CN, C(6)F(5) or C(6)Cl(5)) and [Pt(C(6)F(5))(3)(L)](-) (L=CNMe, PH(3)) systems has been studied by density functional calculations at the B3LYP level of theory, using the SDD basis set. The R(4)Pt-NO and (C(6)F(5))(3)(L)Pt-NO interactions generally involve two components: i) a direct Pt-NO bonding interaction and ii) multicenter-bonding interactions between the N atom of the NO ligand and the donor atoms of the R and L ligands. Moreover, with the more complex R groups, C(6)F(5) or C(6)Cl(5), a third component has been found to arise, which involves multicenter electrostatic interactions between the positively charged NO ligand and the negatively charged halo-substituents in the ortho-position of the C(6)X(5) groups (X=F, Cl). The contribution of each component to the Pt-NO bonding in R(4)Pt-NO and (C(6)F(5))(3)(L)Pt-NO compounds seems to be modulated by the electronic and steric effects of the R and L ligands.

16.
J Am Chem Soc ; 125(8): 2307-18, 2003 Feb 26.
Article in English | MEDLINE | ID: mdl-12590561

ABSTRACT

The detailed reaction pathways for the ammonium cyanate transformation into urea (Wöhler's reaction) in the gas phase, in solution, and in the solid state have exhaustively been explored by means of first-principles quantum chemical calculations at the B3LYP level of theory using the 6-31G(d,p) basis set. This serendipitous synthesis of urea is predicted to proceed in two steps; the first step involves the decomposition of the ammonium cyanate to ammonia and isocyanic or cyanic acid, and the second one, which is the main reaction step (and probably the rate-determining step), involves the interaction of NH(3) with either isocyanic or cyanic acid. Several alternative pathways were envisaged for the main reaction step of Wöhler's reaction in a vacuum involving the formation of "four-center" transition states. Modeling Wöhler's reaction in aqueous solution and in the solid state, it was found that the addition of NH(3) to both acids is assisted (autocatalyzed) by the active participation of extra H(2)O and/or NH(3) molecules, through a preassociative, cooperative, and hydrogen-transfer relay mechanism involving the formation of "six-center" or even "eight-center" transition states. The most energetically economic path of the rate-determining step of Wöhler's reaction is that of the addition of NH(3) to the C=N double bond of isocyanic acid, directly affording urea. An alternative pathway corresponding to the anti-addition of ammonia to the Ctbd1;N triple bond of cyanic acid, yielding urea's tautomer HN=C(OH)NH(2), seems to be another possibility. In the last case, urea is formed through a prototropic tautomerization of its enolic form. The energies of the reactants, products, and all intermediates along with the barrier heights for each reaction path have been calculated at the B3LYP/6-31G(d,p) level of theory. The geometry optimization and characterization of all of the stationary points found on the potential energy hypersurfaces was performed at the same level of theory.


Subject(s)
Urea/chemistry , Ammonia/chemistry , Catalysis , Cyanates/chemistry , Models, Molecular , Quantum Theory , Thermodynamics , Urea/chemical synthesis
17.
J Am Chem Soc ; 125(5): 1136-7, 2003 Feb 05.
Article in English | MEDLINE | ID: mdl-12553793

ABSTRACT

A new class of cyclic hydrocoppers(I) with the general formula CunHn (n = 3-6), resembling the cyclic hydrocarbon analogues, were predicted by means of DFT calculations to be stable molecules adopting a perfect planar configuration of high-symmetry characteristic of the aromatic systems.

18.
J Comput Chem ; 23(13): 1266-80, 2002 Oct.
Article in English | MEDLINE | ID: mdl-12210152

ABSTRACT

A detailed exploration of the configurational and conformational space of chloro- and bromo-hydroxyformaldoximes, Xhfaox (X = Cl, Br) has been carried out with the aid of the B3LYP level of density functional theory, using the 6-31G(d,p) basis set. The most stable configuration in each series of the Clhfaox and Brhfaox conformers corresponds to the Z-s-cis, s-trans configuration, while the highest energy Z-(s-trans, s-cis) conformers were found at 7.0(7.6) and 6.0(6.6) kcal mol(-1), respectively, at the B3LYP(QCISD(T)) levels of theory. Saddle points were also located on the PES of the Clhfaox and Brhfaox compounds corresponding to Z-(s-cis, s-cis) conformers at 13.8(14.9) and 13.6(14.6) kcal mol(-1), respectively, at the B3LYP(QCISD(T)) levels. Upon dehydration Xhfaox could afford a number of isomeric CXNO species. The dehydration processes of Xhfaox are predicted to be endothermic, the computed heats of reactions found in the range of 20.5 to 86.2 kcal mol(-1) and 15.9 to 100.4 kcal mol(-1) at the B3LYP and QCISD(T) levels, respectively. The reaction pathways for the addition of water to halo-fulminates yielding the most stable Xhfaox conformers was predicted to be concerted with a single transition structure, but are asynchronous with activation barriers of 32.8 and 43.0 kcal mol(-1) for the chloro- and bromo-derivatives, respectively. The PES governing the isomerization reactions of the CXNO isomers have also been calculated, and possible isomerization pathways have been delineated. Upon dehydrohalogenation the Xhfaox conformers yield hydroxy-isocyanate or hydroxy-fulminate, the former being more stable by 31.8(18.8) kcal mol(-1) at the B3LYP(QCISD(T)) levels of theory. The reaction pathways for the addition of HX to hydroxy-isocyanate were predicted to be slightly exothermic, the heats of reactions being -3.2 and -5.5 kcal mol(-1), respectively, and have to surmount high activation barriers of 39.7 and 35.0 kcal mol(-1), respectively. Similarly, the addition of HX to hydroxy-fulminate was predicted to be much more exothermic, the heats of reactions being -34.7 and -37.3 kcal mol(-1), respectively, and have to surmount much lower activation barriers of only 10.5 and 7.5 kcal mol(-1) respectively, at the B3LYP level. Finally, calculated structures, relative stability, and bonding properties of all stationary points located on the PES of the systems and reactions studied are thoroughly discussed with respect to computed electronic properties.

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