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1.
JAMA ; 324(15): 1543-1556, Oct. 20, 2020.
Article in English | BIGG - GRADE guidelines | ID: biblio-1146662

ABSTRACT

Down syndrome is the most common chromosomal condition, and average life expectancy has increased substantially, from 25 years in 1983 to 60 years in 2020. Despite the unique clinical comorbidities among adults with Down syndrome, there are no clinical guidelines for the care of these patients. To develop an evidence-based clinical practice guideline for adults with Down syndrome. The Global Down Syndrome Foundation Medical Care Guidelines for Adults with Down Syndrome Workgroup (n = 13) developed 10 Population/Intervention/ Comparison/Outcome (PICO) questions for adults with Down syndrome addressing multiple clinical areas including mental health (2 questions), dementia, screening or treatment of diabetes, cardiovascular disease, obesity, osteoporosis, atlantoaxial instability, thyroid disease, and celiac disease. These questions guided the literature search in MEDLINE, EMBASE, PubMed, PsychINFO, Cochrane Library, and the TRIP Database, searched from January 1, 2000, to February 26, 2018, with an updated search through August 6, 2020. Using the GRADE (Grading of Recommendations, Assessment, Development, and Evaluation) methodology and the Evidence-to-Decision framework, in January 2019, the 13-member Workgroup and 16 additional clinical and scientific experts, nurses, patient representatives, and a methodologist developed clinical recommendations. A statement of good practice was made when there was a high level of certainty that the recommendation would do more good than harm, but there was little direct evidence. From 11 295 literature citations associated with 10 PICO questions, 20 relevant studies were identified. An updated search identified 2 additional studies, for a total of 22 included studies (3 systematic reviews, 19 primary studies), which were reviewed and synthesized. Based on this analysis, 14 recommendations and 4 statements of good practice were developed. Overall, the evidence base was limited. Only 1 strong recommendation was formulated: screening for Alzheimer-type dementia starting at age 40 years. Four recommendations (managing risk factors for cardiovascular disease and stroke prevention, screening for obesity, and evaluation for secondary causes of osteoporosis) agreed with existing guidance for individuals without Down syndrome. Two recommendations for diabetes screening recommend earlier initiation of screening and at shorter intervals given the high prevalence and earlier onset in adults with Down syndrome. These evidence-based clinical guidelines provide recommendations to support primary care of adults with Down syndrome. The lack of high-quality evidence limits the strength of the recommendations and highlights the need for additional research.


Subject(s)
Humans , Adult , Primary Health Care/organization & administration , Patient Care Management/organization & administration , Down Syndrome
2.
Evid Rep Technol Assess (Full Rep) ; (211): 1-945, 2013 Mar.
Article in English | MEDLINE | ID: mdl-24423049

ABSTRACT

OBJECTIVES: To review important patient safety practices for evidence of effectiveness, implementation, and adoption. DATA SOURCES: Searches of multiple computerized databases, gray literature, and the judgments of a 20-member panel of patient safety stakeholders. REVIEW METHODS: The judgments of the stakeholders were used to prioritize patient safety practices for review, and to select which practices received in-depth reviews and which received brief reviews. In-depth reviews consisted of a formal literature search, usually of multiple databases, and included gray literature, where applicable. In-depth reviews assessed practices on the following domains: • How important is the problem? • What is the patient safety practice? • Why should this practice work? • What are the beneficial effects of the practice? • What are the harms of the practice? • How has the practice been implemented, and in what contexts? • Are there any data about costs? • Are there data about the effect of context on effectiveness? We assessed individual studies for risk of bias using tools appropriate to specific study designs. We assessed the strength of evidence of effectiveness using a system developed for this project. Brief reviews had focused literature searches for focused questions. All practices were then summarized on the following domains: scope of the problem, strength of evidence for effectiveness, evidence on potential for harmful unintended consequences, estimate of costs, how much is known about implementation and how difficult the practice is to implement. Stakeholder judgment was then used to identify practices that were "strongly encouraged" for adoption, and those practices that were "encouraged" for adoption. RESULTS: From an initial list of over 100 patient safety practices, the stakeholders identified 41 practices as a priority for this review: 18 in-depth reviews and 23 brief reviews. Of these, 20 practices had their strength of evidence of effectiveness rated as at least "moderate," and 25 practices had at least "moderate" evidence of how to implement them. Ten practices were classified by the stakeholders as having sufficient evidence of effectiveness and implementation and should be "strongly encouraged" for adoption, and an additional 12 practices were classified as those that should be "encouraged" for adoption. CONCLUSIONS: The evidence supporting the effectiveness of many patient safety practices has improved substantially over the past decade. Evidence about implementation and context has also improved, but continues to lag behind evidence of effectiveness. Twenty-two patient safety practices are sufficiently well understood, and health care providers can consider adopting them now.


Subject(s)
Delivery of Health Care/standards , Health Personnel/standards , Patient Safety/standards , Humans
3.
Langmuir ; 27(23): 13983-7, 2011 Dec 06.
Article in English | MEDLINE | ID: mdl-22054300

ABSTRACT

We demonstrate the accurate nanoscale mapping of near-surface loss and storage moduli on a polystyrene-polypropylene blend with contact resonance force microscopy (CR-FM). These viscoelastic properties are extracted from spatially resolved maps of the contact resonance frequency and quality factor of the AFM cantilever. We consider two methods of data acquisition: (i) discrete stepping between mapping points and (ii) continuous scanning. For point mapping and low-speed scanning, the values of the relative loss and storage modulus are in good agreement with the time-temperature superposition of low-frequency dynamic mechanical analysis measurements to the high frequencies probed by CR-FM.

4.
Nanotechnology ; 22(35): 355705, 2011 Sep 02.
Article in English | MEDLINE | ID: mdl-21821874

ABSTRACT

We report on a technique that simultaneously quantifies the contact stiffness and dissipation of an AFM cantilever in contact with a surface, which can ultimately be used for quantitative nanomechanical characterization of surfaces. The method is based on measuring the contact resonance frequency using dual AC resonance tracking (DART), where the amplitude and phase of the cantilever response are monitored at two frequencies on either side of the contact resonance. By modelling the tip-sample contact as a driven damped harmonic oscillator, the four measured quantities (two amplitudes and two phases) allow the four model parameters, namely, drive amplitude, drive phase, resonance frequency and quality factor, to be calculated. These mechanical parameters can in turn be used to make quantitative statements about localized sample properties. We apply the method to study the electromechanical coupling coefficients in ferroelectric materials and the storage and loss moduli in viscoelastic materials.

5.
Oncogene ; 27(42): 5578-89, 2008 Sep 18.
Article in English | MEDLINE | ID: mdl-18504433

ABSTRACT

A comprehensive microarray analysis of hepatocellular carcinoma (HCC) revealed distinct synexpression patterns during intrahepatic metastasis. Recent evidence has demonstrated that synexpression group member genes are likely to be regulated by master control gene(s). Here we investigate the functions and gene regulation of the transcription factor SOX4 in intrahepatic metastatic HCC. SOX4 is important in tumor metastasis as RNAi knockdown reduces tumor cell migration, invasion, in vivo tumorigenesis and metastasis. A multifaceted approach integrating gene profiling, binding site computation and empirical verification by chromatin immunoprecipitation and gene ablation refined the consensus SOX4 binding motif and identified 32 binding loci in 31 genes with high confidence. RNAi knockdown of two SOX4 target genes, neuropilin 1 and semaphorin 3C, drastically reduced cell migration activity in HCC cell lines suggesting that SOX4 exerts some of its action via regulation of these two downstream targets. The discovery of 31 previously unidentified targets expands our knowledge of how SOX4 modulates HCC progression and implies a range of novel SOX4 functions. This integrated approach sets a paradigm whereby a subset of member genes from a synexpression group can be regulated by one master control gene and this is exemplified by SOX4 and advanced HCC.


Subject(s)
Carcinoma, Hepatocellular/pathology , Liver Neoplasms/pathology , Oligonucleotide Array Sequence Analysis/methods , SOXC Transcription Factors/physiology , Animals , Cell Line, Tumor , Cell Movement , Chromatin Immunoprecipitation , Gene Expression Profiling , Humans , Mice , Neoplasm Invasiveness , Neoplasm Metastasis , Neuropilin-1/genetics , Phylogeny , RNA, Small Interfering/genetics , SOXC Transcription Factors/antagonists & inhibitors , SOXC Transcription Factors/genetics , Semaphorins/genetics
6.
Histopathology ; 51(2): 204-18, 2007 Aug.
Article in English | MEDLINE | ID: mdl-17559540

ABSTRACT

AIMS: Survivin, a newly discovered member of the inhibitor of apoptosis protein family, is suggested to be involved in liver carcinogenesis. The aim was to investigate the clinical significance of survivin expression in resected hepatocellular carcinoma (HCC) and paired adjacent non-tumour tissue. METHODS AND RESULTS: Immunohistochemistry, reverse transcriptase-polymerase chain reaction and Western blots were used to examine survivin mRNA and protein levels in 94 specimens of HCC tissues at different TNM stages and the data were correlated with the clinicopathological profiles. Patients were categorized into those with high tumour survivin protein levels (T-N >or= -1) and those with low levels (T-N < -1). Follow-up data were collected prospectively. mRNA levels of survivin and its splice variants in tumour tissue were significantly higher than in paired non-tumour tissue. However, survivin protein levels in paired non-tumour tissue were significantly higher than in tumour tissue from all three TNM stages. Additionally, high tumour survivin protein levels (T-N >or= -1) correlated with a better prognosis and low levels (T-N < -1) with a worse survival rate. CONCLUSIONS: High cytoplasmic survivin protein levels in HCC tissues seem to be an indicator of better prognosis in HCC patients after resection.


Subject(s)
Carcinoma, Hepatocellular/metabolism , Carcinoma, Hepatocellular/pathology , Liver Neoplasms/metabolism , Liver Neoplasms/pathology , Microtubule-Associated Proteins/metabolism , Neoplasm Proteins/metabolism , Alternative Splicing , Antibody Specificity , Base Sequence , Biomarkers, Tumor/genetics , Biomarkers, Tumor/metabolism , Carcinoma, Hepatocellular/genetics , Cell Line, Tumor , DNA Primers/genetics , Female , Humans , Immunohistochemistry , Inhibitor of Apoptosis Proteins , Liver Neoplasms/genetics , Male , Microtubule-Associated Proteins/genetics , Microtubule-Associated Proteins/immunology , Neoplasm Proteins/genetics , Neoplasm Proteins/immunology , Neoplasm Staging , Prognosis , RNA, Messenger/genetics , RNA, Messenger/metabolism , RNA, Neoplasm/genetics , RNA, Neoplasm/metabolism , Reverse Transcriptase Polymerase Chain Reaction , Survivin
7.
Oncogene ; 26(29): 4272-83, 2007 Jun 21.
Article in English | MEDLINE | ID: mdl-17237822

ABSTRACT

A significant challenge in the post-genomic era is how to prioritize differentially expressed and uncharacterized novel genes found in hepatocellular carcinoma (HCC) microarray profiling. One such category is cell cycle regulated genes that have only evolved in higher organisms but not in lower eukaryotic cells. Characterization of these genes may reveal some novel human cancer-specific abnormalities. A novel transcript, FLJ10540 was identified. FLJ10540 is overexpressed in HCC as examined by quantitative reverse transcription-polymerase chain reaction and immunohistochemistry. The patients with higher FLJ10540 expression had a poor survival than those with lower FLJ10540 expression. Functional characterization indicates that FLJ10540 displays a number of characteristics associated with an oncogene, including anchorage-independent growth, enhanced cell growth at low serum levels and induction of tumorigenesis in nude mice. FLJ10540-elicited cell transformation is mediated by activation of the phosphatidylinositol 3'-kinase (PI3K)/AKT pathway. Moreover, FLJ10540 forms a complex with PI3K and can activate PI3K activity, which provides a mechanistic basis for FLJ10540-mediated oncogenesis. Together, using a combination of bioinformatics searches and empirical data, we have identified a novel oncogene, FLJ10540, which is conserved only in higher organisms. The finding raises the possibility that FLJ10540 is a potential new therapeutic target for HCC treatment. These findings may contribute to the development of new therapeutic strategies that are able to block the PI3K/AKT pathway in cancer cells.


Subject(s)
Carcinoma, Hepatocellular/enzymology , Carcinoma, Hepatocellular/pathology , Cell Cycle Proteins/physiology , Cell Transformation, Neoplastic/pathology , Liver Neoplasms/enzymology , Liver Neoplasms/pathology , Nuclear Proteins/physiology , Phosphatidylinositol 3-Kinases/metabolism , Proto-Oncogene Proteins c-akt/metabolism , Carcinoma, Hepatocellular/genetics , Cell Cycle Proteins/biosynthesis , Cell Cycle Proteins/genetics , Cell Transformation, Neoplastic/genetics , Cell Transformation, Neoplastic/metabolism , Humans , Liver Neoplasms/genetics , Nuclear Proteins/biosynthesis , Nuclear Proteins/genetics , Phosphatidylinositol 3-Kinases/physiology , Proto-Oncogene Proteins c-akt/physiology , Tumor Cells, Cultured
8.
Neurology ; 66(11): 1711-6, 2006 Jun 13.
Article in English | MEDLINE | ID: mdl-16769945

ABSTRACT

OBJECTIVE: To examine the potential validity of performance measures and examination-based scales in Friedreich ataxia (FA) by examining their correlation with disease characteristics. METHODS: The authors assessed the properties of a candidate clinical outcome measure, the Friedreich Ataxia Rating Scale (FARS), and simple performance measures (9-hole peg test, the timed 25-foot walk, PATA test, and low-contrast letter acuity) in 155 patients with FA from six institutions, and correlated the scores with disease duration, functional disability, activity of daily living scores, age, and shorter GAA repeat length to assess whether these measures capture the severity of neurologic dysfunction in FA. RESULTS: Scores for the FARS and performance measures correlated significantly with functional disability, activities of daily living scores, and disease duration, showing that these measures meet essential criteria for construct validity for measuring the progressive nature of FA. In addition, the FARS and transformed performance measures scores were predicted by age and shorter GAA repeat length in linear regression models accounting for sex and testing site. Correlations between performance measures were moderate in magnitude, suggesting that each test captures separate yet related dimensions of neurologic function in FA and that a composite measure might better predict disease status. Composite measures created using cohort means and standard deviations predicted disease status better than or equal to single performance measures or examination-based measures. CONCLUSIONS: The Friedreich Ataxia Rating Scale, performance measures, and performance measure composites provide valid assessments of disease progression in Friedreich ataxia.


Subject(s)
Friedreich Ataxia/diagnosis , Friedreich Ataxia/epidemiology , Gait Ataxia/diagnosis , Gait Ataxia/epidemiology , Outcome Assessment, Health Care/methods , Physical Examination/statistics & numerical data , Adolescent , Adult , Aged , Aged, 80 and over , Cohort Studies , Disability Evaluation , Female , Health Status Indicators , Humans , Male , Middle Aged , Physical Examination/methods , Prognosis , Psychomotor Performance , Reproducibility of Results , Sensitivity and Specificity , Severity of Illness Index , United States/epidemiology
9.
Zhonghua Yi Xue Za Zhi (Taipei) ; 63(7): 521-6, 2000 Jul.
Article in English | MEDLINE | ID: mdl-10934804

ABSTRACT

BACKGROUND: Polymerase chain reaction (PCR) techniques have revolutionized the diagnosis of tuberculosis (TB). PCR has significantly improved the sensitivity and specificity of existing diagnostic methods. In this study, we report our experience using a modified IS6110-based nested PCR assay for rapid diagnosis of pulmonary TB. METHODS: A total of 327 respiratory specimens from 275 patients suspected of having pulmonary TB at Taipei Veterans General Hospital were tested using the nested PCR assay, acid-fast smear and culture for the presence of Mycobacterium tuberculosis complex (MTB). Nested PCR was performed with IS6110-based primers specific for MTB. We reviewed the medical records of patients and analyzed the clinical features. The PCR results were compared with the final clinical diagnosis. RESULTS: We identified MTB in 167 of 327 samples by the nested PCR assay. No non-tuberculous Mycobacterium (NTM) was identified among the clinical samples. Diagnosis by PCR took about 6 hours in this study. The sensitivity and specificity compared with culture were 94.7% and 100%, respectively for the smear-positive, culture-positive samples, and 76.7% and 98.6% for the smear-negative, culture-positive samples. The overall sensitivity, specificity, positive and negative predictive values, compared with culture results, were 91.7%, 98.6%, 98.8% and 90.6%, respectively. Two specimens positive by PCR and negative by culture were taken from patients on anti-TB drug therapy. These specimens were culture-positive before anti-TB drug therapy. After resolution of the discrepancies by studying the patients' clinical data, both specificity and positive predictive value reached 100%. CONCLUSIONS: The results indicated that this in-house nested PCR assay is a rapid and sensitive method for diagnosing pulmonary TB. It is also good for excluding infections caused by NTM.


Subject(s)
Polymerase Chain Reaction/methods , Tuberculosis, Pulmonary/diagnosis , Humans , Sensitivity and Specificity
10.
Biochemistry ; 38(49): 16167-77, 1999 Dec 07.
Article in English | MEDLINE | ID: mdl-10587439

ABSTRACT

The CC chemokine, monocyte chemotactic protein, 1 (MCP-1) functions as a major chemoattractant for T-cells and monocytes by interacting with the seven-transmembrane G protein-coupled receptor CCR2. To identify which residues of MCP-1 contribute to signaling though CCR2, we mutated all the surface-exposed residues to alanine and other amino acids and made some selective large changes at the amino terminus. We then characterized the impact of these mutations on three postreceptor pathways involving inhibition of cAMP synthesis, stimulation of cytosolic calcium influx, and chemotaxis. The results highlight several important features of the signaling process and the correlation between binding and signaling: The amino terminus of MCP-1 is essential as truncation of residues 2-8 ([1+9-76]hMCP-1) results in a protein that cannot stimulate chemotaxis. However, the exact peptide sequence may be unimportant as individual alanine mutations or simultaneous replacement of residues 3-6 with alanine had little effect. Y13 is also important and must be a large nonpolar residue for chemotaxis to occur. Interestingly, both Y13 and [1+9-76]hMCP-1 are high-affinity binders and thus affinity of these mutants is not correlated with ability to promote chemotaxis. For the other surface residues there is a strong correlation between binding affinity and agonist potency in all three signaling pathways. Perhaps the most interesting observation is that although Y13A and [1+9-76]hMCP are antagonists of chemotaxis, they are agonists of pathways involving inhibition of cAMP synthesis and, in the case of Y13A, calcium influx. These results demonstrate that these two well-known signaling events are not sufficient to drive chemotaxis. Furthermore, it suggests that specific molecular features of MCP-1 induce different conformations in CCR2 that are coupled to separate postreceptor pathways. Therefore, by judicious design of antagonists, it should be possible to trap CCR2 in conformational states that are unable to stimulate all of the pathways required for chemotaxis.


Subject(s)
Amino Acids/physiology , Chemokine CCL2/physiology , Receptors, Chemokine/physiology , Receptors, Cytokine/physiology , Signal Transduction , Amino Acids/isolation & purification , Binding Sites/genetics , Calcium/antagonists & inhibitors , Calcium/metabolism , Cell Line , Cell Membrane/genetics , Cell Membrane/physiology , Cell Migration Inhibition , Chemokine CCL2/agonists , Chemokine CCL2/genetics , Cyclic AMP/antagonists & inhibitors , Humans , Peptide Fragments/genetics , Peptide Fragments/metabolism , Peptide Fragments/physiology , Protein Structure, Secondary/genetics , Protein Structure, Tertiary/genetics , Receptors, CCR2 , Receptors, Chemokine/metabolism , Receptors, Cytokine/metabolism , Signal Transduction/genetics , Tyrosine/genetics , Tyrosine/physiology
11.
Genomics ; 50(3): 331-40, 1998 Jun 15.
Article in English | MEDLINE | ID: mdl-9676427

ABSTRACT

Hepatocellular carcinoma (HCC) is one of the major causes of human cancer deaths worldwide. To identify alterations of the genetic program associated with human HCC, we designed a new protocol based on the high-density replica method to analyze protein kinase gene expression in normal liver, HCC, and HCC-derived cell lines. RNA was prepared for reverse transcription and cDNA was used for PCR amplification of the conserved catalytic domain of protein kinase genes. Initially, from a pair of HCC and the adjacent noncancerous tissues, we sequenced 228 samples and identified 26 genes that represent different tyrosine kinase subfamilies. High-density grid filters were then prepared to assist the identification, by hybridization, of genes that are differentially expressed in normal vs HCC samples. Eleven tyrosine kinase genes were tested, and positive signals were reliably scored by doubly offset duplicates and by two independent gene-specific probes. Of the 11 genes tested, PDGF receptor-beta, MEKK-3, axl, and FGFR-4 are preferentially expressed in tumor samples. Additionally, we analyzed protein kinase gene expression in five HCC cell lines and identified distinct kinase gene expression patterns in different cell lines. Our results suggest that multiple kinases are activated in different tumors and confirm that there is molecular heterogeneity in the mechanisms sustaining autonomous cell growth in liver tumor formation.


Subject(s)
Carcinoma, Hepatocellular/genetics , Gene Expression Regulation, Neoplastic , In Situ Hybridization/methods , Liver Neoplasms/genetics , MAP Kinase Kinase Kinase 1 , Protein-Tyrosine Kinases/genetics , Blotting, Northern , Blotting, Western , Carcinoma, Hepatocellular/enzymology , Gene Library , Humans , Liver/enzymology , Liver Neoplasms/enzymology , Oncogene Proteins/genetics , Oncogene Proteins/metabolism , Polymerase Chain Reaction , Protein Serine-Threonine Kinases/genetics , Proto-Oncogene Proteins , Receptor Protein-Tyrosine Kinases/genetics , Receptor Protein-Tyrosine Kinases/metabolism , Receptors, Fibroblast Growth Factor/genetics , Receptors, Fibroblast Growth Factor/metabolism , Receptors, Platelet-Derived Growth Factor/genetics , Sequence Analysis, DNA , Transcription, Genetic , Tumor Cells, Cultured , Axl Receptor Tyrosine Kinase
12.
J Biomed Sci ; 5(2): 141-9, 1998.
Article in English | MEDLINE | ID: mdl-9662074

ABSTRACT

A human cDNA clone encoding the calcium/calmodulin-dependent protein kinase kinase (CaMKK) was isolated by RT-PCR amplification of the fragment corresponding to the conserved kinase catalytic domain followed by rapid amplification of cDNA ends and cDNA library screening. Compilation of nucleotide sequencing data yielded a consensus cDNA sequence of 1.9 kb with an open reading frame of 1,251 nucleotides in length which translates to a polypeptide of 417 amino acids (47 kd). It showed significant homology to the rat brain CaMKK isozymes. The human CaMKK, which was expressed as a Flag-tagged protein in human non-small cell lung cancer H- 1299 cells followed by immunoprecipitation with anti-Flag antibody, was shown to phosphorylate recombinant human CaMK I in a calcium/CaM-dependent fashion. Northern blot analysis revealed that human CaMKK is ubiquitously expressed, with brain showing the highest level of expression. The CaMKK gene is localized to human chromosome 12. The presence of cDNA clones with divergent 3' terminal sequences suggests a family of CaMKK variants which may arise from alternative splicing.


Subject(s)
Protein Kinases/genetics , Alternative Splicing , Amino Acid Sequence , Animals , Base Sequence , Brain/enzymology , Carcinoma, Non-Small-Cell Lung/enzymology , Carcinoma, Non-Small-Cell Lung/genetics , Chromosome Mapping , Chromosomes, Human, Pair 12/genetics , Cloning, Molecular , DNA Primers/genetics , DNA, Complementary/genetics , Gene Expression , Humans , In Vitro Techniques , Lung Neoplasms/enzymology , Lung Neoplasms/genetics , Mitogen-Activated Protein Kinase Kinases , Molecular Sequence Data , Polymerase Chain Reaction , Protein Kinases/metabolism , Rats , Sequence Homology, Amino Acid , Tissue Distribution , Tumor Cells, Cultured
13.
Ann N Y Acad Sci ; 812: 216-7, 1997 May 30.
Article in English | MEDLINE | ID: mdl-9186748

ABSTRACT

Structural criteria, i.e., primary sequence homology, indicates a unique 5-HT subtype. Operational criteria suggest that this is also true, although no selective agonist or antagonist is available to fully define the receptor, and thus its function in vivo. Transductional data provide perhaps the weakest criterion to define the receptor, since at least two other subtypes (5-HT4 and 5-ht6) signal via the same second messenger. These criteria, taken together, suggest that the cloned sequence represents an endogenously expressed 5-HT receptor and should be referred to as "5-HT7" receptors, rather than "5-ht7".


Subject(s)
Receptors, Serotonin/metabolism , Amino Acid Sequence , Animals , CHO Cells , Cerebral Cortex/chemistry , Cloning, Molecular , Cricetinae , Guinea Pigs , Hippocampus/chemistry , Receptors, Serotonin/genetics
14.
J Virol ; 70(11): 7549-60, 1996 Nov.
Article in English | MEDLINE | ID: mdl-8892874

ABSTRACT

A systematic comparison of transcriptional activation by papillomavirus E2 proteins revealed that the E2 proteins from high-risk human papillomaviruses (human papillomavirus type 16 [HPV-16] and HPV-18) are much more active than are the E2 proteins from low-risk HPVs (HPV-6b and HPV-11). Despite the tropism of HPVs for particular epithelial cell types, this difference in transcriptional activation was observed in a number of different epithelial and nonepithelial cells. The enhanced activities of the E2 proteins from high-risk HPVs did not result from higher steady-state levels of protein in vivo, and in vitro DNA-binding assays revealed similar binding properties for these two classes of E2 proteins. These results demonstrate that the E2 proteins from high-risk HPVs have an intrinsically enhanced potential to activate transcription from promoters with E2-responsive elements. We found that there are also substantial differences between the activation properties of the bovine papillomavirus type 1 E2 protein and those of either of the two classes of HPV E2 proteins, especially with regard to requirements for particular configurations of E2 binding sites in the target promoter. Our results indicate that there are at least three distinct functional classes of E2 proteins and that these classes of E2 proteins may perform different roles during the respective viral life cycles.


Subject(s)
DNA-Binding Proteins/metabolism , Oncogene Proteins, Viral/metabolism , Papillomaviridae/metabolism , Transcriptional Activation , Animals , Binding Sites , Bovine papillomavirus 1/genetics , Bovine papillomavirus 1/metabolism , Cattle , Cell Extracts , DNA-Binding Proteins/genetics , Humans , Oncogene Proteins, Viral/genetics , Papillomaviridae/genetics , Recombinant Fusion Proteins/genetics , Recombinant Fusion Proteins/metabolism , Structure-Activity Relationship , Transfection , Tumor Cells, Cultured , Viral Proteins/genetics , Viral Proteins/metabolism
15.
Genes Dev ; 10(8): 934-47, 1996 Apr 15.
Article in English | MEDLINE | ID: mdl-8608941

ABSTRACT

Cells with a functional p53 pathway undergo a G0/G1 arrest or apoptosis when treated with gamma radiation or many chemotherapeutic drugs. It has been proposed that DNA damage is the exclusive signal that triggers the arrest response. However, we found that certain ribonucleotide biosynthesis inhibitors caused a p53-dependent G0 or early G1 arrest in the absence of replicative DNA synthesis or detectable DNA damage in normal human fibroblasts. CTP, GTP, or UTP depletion alone was sufficient to induce arrest. In contrast to the p53-dependent response to DNA damage, characterized by long-term arrest and irregular cellular morphologies, the antimetabolite-induced arrest was highly reversible and cellular morphologies remained relatively normal. Both arrest responses correlated with prolonged induction of p53 and the Cdk inhibitor P21(WAF1/CIP1/SDI1) and with dephosphorylation of pRb. Thus, we propose that p53 can serve as a metabolite sensor activated by depletion of ribonucleotides or products or processes dependent on ribonucleotides. Accordingly, p53 may play a role in inducing a quiescence-like arrest state in response to nutrient challenge and a senescence-like arrest state in response to DNA damage. These results have important implications for the mechanisms by which p53 prevents the emergence of genetic variants and for developing more effective approaches to chemotherapy based on genotype.


Subject(s)
Antimetabolites, Antineoplastic/pharmacology , Cell Cycle , Ribonucleotides/metabolism , Tumor Suppressor Protein p53/physiology , Adenosine Monophosphate/metabolism , Amides , Aspartic Acid/analogs & derivatives , Aspartic Acid/pharmacology , Cell Cycle/drug effects , Cells, Cultured , Chromosome Aberrations , DNA Damage , Gamma Rays , Humans , Male , Phosphonoacetic Acid/analogs & derivatives , Phosphonoacetic Acid/pharmacology , Pyrazoles , RNA/biosynthesis , Ribonucleosides/pharmacology , Ribose
16.
J Neurochem ; 63(2): 456-64, 1994 Aug.
Article in English | MEDLINE | ID: mdl-7518496

ABSTRACT

A cDNA clone (designated as GP2-7) encoding a novel 5-hydroxytryptamine (5-HT) receptor was isolated from a guinea pig hippocampal library. The receptor shares amino acid homology within the hydrophobic domains with other cloned 5-HT receptor subtypes (34-48%). The sequence of GP2-7 is homologous to that described for a novel receptor previously cloned from a rat brain cDNA library and provisionally designated as 5-HT7. mRNA for GP2-7 was detected in cortical and limbic brain regions. Transiently expressed GP2-7 showed high-affinity binding to [3H]5-HT (pKi = 9.0) with the following rank order of affinities: 5-carboxyamidotryptamine (5-CT) > 5-HT = 5-methoxytryptamine (5-MeOT) > methiothepin > 8-hydroxy-2-(dipropylamino)tetralin (8-OH-DPAT) > spiperone >> sumatriptan. Adenylyl cyclase activity in CHO-K1 cells transiently transfected with GP2-7 was stimulated by several analogues of 5-HT with the following order of potency: 5-CT > 5-HT = 5-MeOT > dipropyl-5-CT > 8-OH-DPAT. Methiothepin and spiperone were potent antagonists. Preliminary analysis suggests that GP2-7 closely resembles a receptor in the guinea pig hippocampus that exhibits a high affinity toward 5-CT.


Subject(s)
Adenylyl Cyclases/metabolism , Brain/metabolism , Hippocampus/metabolism , Receptors, Serotonin/biosynthesis , Receptors, Serotonin/metabolism , Amino Acid Sequence , Animals , Binding, Competitive , Blotting, Northern , CHO Cells , Cell Line , Cell Membrane/metabolism , Cloning, Molecular/methods , Cricetinae , Gene Expression , Gene Library , Guinea Pigs , In Situ Hybridization , Kinetics , Mice , Molecular Sequence Data , Phylogeny , Poly A/isolation & purification , Poly A/metabolism , RNA/isolation & purification , RNA/metabolism , RNA, Messenger/analysis , RNA, Messenger/metabolism , Radioligand Assay , Rats , Receptors, Serotonin/genetics , Sequence Homology, Amino Acid , Serotonin/metabolism , Transfection
17.
Biochemistry ; 29(42): 9856-62, 1990 Oct 23.
Article in English | MEDLINE | ID: mdl-2271624

ABSTRACT

The genes that encode the five known enzymes of the mandelate pathway of Pseudomonas putida (ATCC 12633), mandelate racemase (mdlA), (S)-mandelate dehydrogenase (mdlB), benzoylformate decarboxylase (mdlC), NAD(+)-dependent benzaldehyde dehydrogenase (mdlD), and NADP(+)-dependent benzaldehyde dehydrogenase (mdlE), have been cloned. The genes for (S)-mandelate dehydrogenase and benzoylformate decarboxylase have been sequenced; these genes and that for mandelate racemase [Ransom, S. C., Gerlt, J. A., Powers, V. M., & Kenyon, G. L. (1988) Biochemistry 27, 540] are organized in an operon (mdlCBA). Mandelate racemase has regions of sequence similarity to muconate lactonizing enzymes I and II from P. putida. (S)-Mandelate dehydrogenase is predicted to be 393 amino acids in length and to have a molecular weight of 43,352; it has regions of sequence similarity to glycolate oxidase from spinach and ferricytochrome b2 lactate dehydrogenase from yeast. Benzoylformate decarboxylase is predicted to be 499 amino acids in length and to have a molecular weight of 53,621; it has regions of sequence similarity to enzymes that decarboxylate pyruvate with thiamin pyrophosphate as cofactor. These observations support the hypothesis that the mandelate pathway evolved by recruitment of enzymes from preexisting metabolic pathways. The gene for benzoylformate decarboxylase has been expressed in Escherichia coli with the trc promoter, and homogeneous enzyme has been isolated from induced cells.


Subject(s)
Bacterial Proteins/genetics , Genes, Bacterial , Intramolecular Lyases , Mandelic Acids/metabolism , Pseudomonas/genetics , Acetolactate Synthase/genetics , Alcohol Oxidoreductases/genetics , Aldehyde Oxidoreductases/genetics , Amino Acid Sequence , Base Sequence , Carboxy-Lyases/genetics , Escherichia coli/metabolism , Isomerases/genetics , L-Lactate Dehydrogenase/genetics , Molecular Sequence Data , Operon , Pseudomonas/metabolism , Pyruvate Decarboxylase/genetics , Pyruvate Oxidase/genetics , Racemases and Epimerases/genetics , Recombinant Fusion Proteins/biosynthesis , Sequence Alignment , Sequence Homology, Nucleic Acid
18.
J Neurosci ; 10(9): 3135-47, 1990 Sep.
Article in English | MEDLINE | ID: mdl-2204688

ABSTRACT

The rat 1B1075 mRNA encodes a 533-residue novel chromogranin/secretogranin-like acidic protein that contains an apparent secretion signal, several pairs of tandem basic residues, and internally repeated sequence elements. 1B1075 transcripts are detected, by blotting and in situ hybridization, at the highest levels in the neocortex, hippocampus, cerebellar cortex, selected pontine and diencephalic nuclei, and presumptive pituitary corticotrophs, at lower levels in specific nuclei in most other brain regions, but in none of several other tissues. Utilizing antisera to several nonoverlapping synthetic peptide fragments of the predicted protein sequence, we detect a brain- and pituitary-specific 57-kDa protein in cellular processes and fiber tracts, generally consistent with axonal transport from the cell bodies identified by in situ hybridization. Ultrastructural studies demonstrate that this protein is a component of intraneuronal vesicles in axons and vesicle-like structures in dendrites. Based on these data, we suggest the name Secretogranin III for the 1B1075 gene product. In related collaborative studies, a mouse deleted for the 1B1075-homologous gene has been produced that should allow assessment of its physiological role.


Subject(s)
Brain Chemistry , Chromogranins/genetics , Nerve Tissue Proteins/genetics , Pituitary Gland/analysis , Proteins/genetics , RNA, Messenger/genetics , Aging/metabolism , Amino Acid Sequence , Animals , Base Sequence , Brain/growth & development , Brain/ultrastructure , Cloning, Molecular , Cricetinae , Diencephalon/analysis , Diencephalon/ultrastructure , Immunoenzyme Techniques , Mesencephalon/analysis , Mesencephalon/ultrastructure , Mice , Microscopy, Electron , Molecular Sequence Data , Neurons/analysis , Neurons/ultrastructure , Nucleic Acid Hybridization , Rats , Rats, Inbred Strains , Rhombencephalon/analysis , Rhombencephalon/ultrastructure , Spinal Cord/analysis , Spinal Cord/ultrastructure , Tissue Distribution
19.
Biochemistry ; 28(8): 3569-76, 1989 Apr 18.
Article in English | MEDLINE | ID: mdl-2787167

ABSTRACT

Treatment of human promyelocytic leukemia cells U937 with phorbol 12-myristate 13-acetate (TPA) induces them to differentiate into monocytic cells [Harris, P., & Ralph, P. (1985) J. Leukocyte Biol. 37, 407-422]. Here we investigated the effects of TPA on interleukin 1 gene expression and the possible role of protein kinase C (PKC) in this process. Addition of TPA to serum-starved U937 cells induced the expression of the interleukin 1 beta (IL-1 beta) gene. This effect was apparent as early as 2 h and peaked at 24 h in the presence of 5 X 10(-8) M TPA. Higher concentrations of TPA, which partially or totally depleted protein kinase C levels in the cells (10(-9)-2 X 10(-5) M), had an inhibitory effect on IL-1 beta mRNA expression. Cell-permeable 1,2-dioctanoyl-sn-glycerol (diC8), a diacylglycerol that activates PKC in intact cells and cell-free systems, did not mimic the effect of TPA on the IL-1 beta mRNA induction. To determine the protein kinase C isozymes present in the control and TPA- (5 X 10(-8) M) treated U937 cells, we prepared antipeptide antibodies that specifically recognize the alpha, beta, and gamma isoforms of protein kinase C in rat brain cytosol and U937 cell extracts. In "control" U937 cells, 30% of PKC alpha was particulate, and PKC beta was cytosolic, while there was no detectable PKC gamma.(ABSTRACT TRUNCATED AT 250 WORDS)


Subject(s)
Interleukin-1/genetics , Isoenzymes/metabolism , Phorbol Esters/pharmacology , Protein Kinase C/metabolism , Antibody Specificity , Enzyme Activation/drug effects , Gene Expression Regulation/drug effects , Humans , Isoenzymes/immunology , Peptides/immunology , Phosphorylation , Protein Kinase C/immunology , RNA, Messenger/genetics , RNA, Messenger/metabolism , Tetradecanoylphorbol Acetate/pharmacology , Tumor Cells, Cultured/drug effects , Tumor Cells, Cultured/metabolism
20.
Biochemistry ; 28(3): 969-75, 1989 Feb 07.
Article in English | MEDLINE | ID: mdl-2496759

ABSTRACT

The plasmid pSCR1 containing the gene for mandelate racemase (EC 5.1.2.2) from Pseudomonas putida (ATCC 12633) allows Pseudomonas aeruginosa (ATCC 15692) to grow on (R)-mandelate as its sole carbon source [Ransom, S. C., Gerlt, J. A., Powers, V. M., & Kenyon, G. L. (1988) Biochemistry 27, 540]; the chromosome of the P. aeruginosa host apparently does not contain the gene for mandelate racemase but does contain genes for the remaining enzymes in the mandelate pathway and enables growth on (S)-mandelate as carbon source. However, in the presence of alpha-phenylglycidate, an active-site-directed irreversible inhibitor (affinity label) of mandelate racemase, P. aeruginosa transformed with pSCR1 can utilize (S)-mandelate but not (R)-mandelate as carbon source. This inhibition of growth on (R)-mandelate provides a metabolic selection for mutants that are resistant to alpha-phenylglycidate. When (R)-mandelate is used as carbon source and alpha-phenylglycidate is present, a few colonies of P. aeruginosa transformed with pSCR1 grow slowly and appear on plates after several days. The plasmid isolated from these cells confers resistance to alpha-phenylglycidate on newly transformed cells of P. aeruginosa. This resistance to the affinity label is not due to a mutation within the primary structure of the enzyme. A single base change (C----A) located 87 bp upstream of the initiation codon for the gene for mandelate racemase was detected in three independent isolates of alpha-phenylglycidate-resistant colonies and appears responsible for a 30-fold increase in the amount of mandelate racemase encoded by the gene contained in the plasmid.(ABSTRACT TRUNCATED AT 250 WORDS)


Subject(s)
Affinity Labels/metabolism , Cloning, Molecular , Genes, Bacterial , Genes , Isomerases/genetics , Mandelic Acids/metabolism , Mutation , Phenylpropionates/metabolism , Pseudomonas aeruginosa/genetics , Pseudomonas/genetics , Racemases and Epimerases/genetics , Drug Resistance, Microbial/genetics , Phenylpropionates/pharmacology , Pseudomonas/enzymology , Pseudomonas aeruginosa/enzymology , Pseudomonas aeruginosa/growth & development , Racemases and Epimerases/isolation & purification , Racemases and Epimerases/metabolism , Recombinant Proteins/isolation & purification , Recombinant Proteins/metabolism
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