Correction: Factors affecting forest area change in Southeast Asia during 1980-2010.

[This corrects the article DOI: 10.1371/journal.pone.0197391.].

Factors affecting forest area change in Southeast Asia during 1980-2010.

While many tropical countries are experiencing rapid deforestation, some have experienced forest transition (FT) from net deforestation to net reforestation. Numerous studies have identified causative factors of FT, among which forest scarcity has been considered as a prerequisite for FT. In fact, in SE Asia, the Philippines, Thailand and Viet Nam, which experienced FT since 1990, exhibited a lower remaining forest area (30±8%) than the other five countries (68±6%, Cambodia, Indonesia, Laos, Malaysia, and Myanmar) where forest loss continues. In this study, we examined 1) the factors associated with forest scarcity, 2) the proximate and/or underlying factors that have driven forest area change, and 3) whether causative factors changed across FT phases (from deforestation to net forest gain) during 1980-2010 in the eight SE Asian countries. We used production of wood, food, and export-oriented food commodities as proximate causes and demographic, social, economic and environmental factors, as well as land-use efficiency, and wood and food trade as underlying causes that affect forest area change. Remaining forest area in 1990 was negatively correlated with population density and potential land area of lowland forests, while positively correlated with per capita wood production. This implies that countries rich in accessible and productive forests, and higher population pressures are the ones that have experienced forest scarcity, and eventually FT. Food production and agricultural input were negatively and positively correlated, respectively, with forest area change during 1980-2009. This indicates that more food production drives deforestation, but higher efficiency of agriculture is correlated with forest gain. We also found a U-shaped response of forest area change to social openness, suggesting that forest gain can be achieved in both open and closed countries, but deforestation might be accelerated in countries undergoing societal transition. These results indicate the importance of environmental, agricultural and social variables on forest area dynamics, and have important implications for predicting future tropical forest change.

Effective spatial scales for evaluating environmental determinants of population density in Yakushima macaques.

Population densities of wildlife species tend to be correlated with resource productivity of habitats. However, wildlife density has been greatly modified by increasing human influences. For effective conservation, we must first identify the significant factors that affect wildlife density, and then determine the extent of the areas in which the factors should be managed. Here, we propose a protocol that accomplishes these two tasks. The main threats to wildlife are thought to be habitat alteration and hunting, with increases in alien carnivores being a concern that has arisen recently. Here, we examined the effect of these anthropogenic disturbances, as well as natural factors, on the local density of Yakushima macaques (Macaca fuscata yakui). We surveyed macaque densities at 30 sites across their habitat using data from 403 automatic cameras. We quantified the effect of natural vegetation (broad-leaved forest, mixed coniferous/broad-leaved forest, etc.), altered vegetation (forestry area and agricultural land), hunting pressure, and density of feral domestic dogs (Canis familiaris). The effect of each vegetation type was analyzed at numerous spatial scales (between 150 and 3,600-m radii from the camera locations) to determine the best scale for explaining macaque density (effective spatial scale). A model-selection procedure (generalized linear mixed model) was used to detect significant factors affecting macaque density. We detected that the most effective spatial scale was 400 m in radius, a scale that corresponded to group range size of the macaques. At this scale, the amount of broad-leaved forest was selected as a positive factor, whereas mixed forest and forestry area were selected as negative factors for macaque density. This study demonstrated the importance of the simultaneous evaluation of all possible factors of wildlife population density at the appropriate spatial scale.

Problems associated with the seed-trap method when measuring seed dispersal in forests inhabited by Japanese macaques.

Despite the widespread use of seed/litter traps in seed dispersal ecology, several problems have arisen when using this method in forests inhabited by semi-terrestrial monkeys. The first issue is the height of the trap relative to the location where macaques spit seeds and/or defecate. For Japanese macaques in the lowland forests of Yakushima Island, southern Japan, 30-50% of the seeds emitted from cheek pouches and faeces will not be caught by seed traps, leading to underestimation of seed fall. The second issue is the attractiveness of seed traps. Macaques sometimes play with the traps, potentially affecting the results of the seed-trap method in complex ways, including both negative and positive effects. To obtain reasonable estimates of total seed dispersal, we recommend that researchers conduct the seed-trap method concurrently with monkey observations, and that they should affix traps more securely to prevent macaques from destroying the traps.

Ecosystem impacts of folivory and frugivory by Japanese macaques in two temperate forests in Yakushima.

Comparing animal consumption to plant primary production provides a means of assessing an animal's impact on the ecosystem and an evaluation of resource limitation. Here, we compared annual fruit and leaf consumption by Japanese macaques (Macaca fuscata) relative to the annual production of these foods in the lowlands and highlands of Yakushima Island, Japan. We estimated consumption by macaques by the direct observation of macaque groups for 1 year in each habitat. We estimated leaf production as the sum of leaf litter fall (corrected for the effect of translocated organic and inorganic matter) and folivory by insects (assumed to be 10%) and by macaques. We estimated fruit production as the sum of fruit litter fall and consumption by birds (estimated by the seed fall) and macaques. The impact of macaque folivory at the community level was negligible relative to production (∼0.04%) compared with folivory by insects (assumed to be 10%); however, for some species, macaque folivory reached up to 10.1% of production. Tree species on which macaques fed did not decline in abundance over 13 years, suggesting that their folivory did not influence tree species dynamics. For the three major fleshy-fruited species in the highland site, macaques consumed a considerable portion of total fruit production (6-40%), rivaling the consumption by birds (32-75%). We conclude that at the community level, macaque folivory was negligible compared with the leaf production, but frugivory was not.

Degradation of Abies veitchii wave-regeneration on Mt. Misen in Ohmine Mountains: effects of sika deer population.

How has the degradation of Abies veitchii wave-regeneration occurred under the sika deer (Cervus nippon) pressure? We conducted tree census and ground vegetation survey in a 1 ha plot in Mt. Misen (Nara prefecture, Japan). We found 15 tree species (over 50 cm in height). Abies accounted for 60.0 % of all living trees, and 46.9 % of Abies were damaged (herbivory, bark stripping and/or fraying) by deer. Spatial distribution of Abies trees showed Abies-wave, although there were few saplings in the dieback zone. Estimated deer population density in 2009 was 57.3 head/km(2). Number of living Abies and standing dead conifer trees, and ground vegetation cover for each quadrat (5 × 5 m) were used to assign the quadrats into 6 clusters. The hierarchical clustering-approach revealed that living Abies distributed mainly on the moss and/or Carex fernaldiana dominated quadrats, but did not on the Dennstaedtia scabra, or Brachypodium sylvaticum dominated quadrats. While standing dead conifer trees distributed mainly on the Carex dominated quadrats, they hardly occur on the moss, the Dennstaedtia or the Brachypodium dominated quadrats. Regeneration of Abies tree and thus the wave-regeneration is hindered for now owing to deer herbivory and bark-stripping. The ground vegetation under the dieback zone has changed from the moss and/or the Carex dominated one to the Carex, the Dennstaedtia or the Brachypodium covered vegetation with the canopy remained open and without Abies regeneration.

Vascular plant species richness along environmental gradients in a cool temperate to sub-alpine mountainous zone in central Japan.

In order to clarify how vegetation types change along the environmental gradients in a cool temperate to sub-alpine mountainous zone and the determinant factors that define plant species richness, we established 360 plots (each 4 × 10 m) within which the vegetation type, species richness, elevation, topographic position index (TPI), slope inclination, and ground light index (GLI) of the natural vegetation were surveyed. Mean elevation, TPI, slope inclination, and GLI differed across vegetation types. Tree species richness was negatively correlated with elevation, whereas fern and herb species richness were positively correlated. Tree species richness was greater in the upper slope area than the lower slope area, whereas fern and herb species richness were greater in the lower slope area. Ferns and trees species richness were smaller in the open canopy, whereas herb species richness was greater in the open canopy. Vegetation types were determined firstly by elevation and secondary by topographic configurations, such as topographic position, and slope inclination. Elevation and topography were the most important factors affecting plant richness, but the most influential variables differed among plant life-form groups. Moreover, the species richness responses to these environmental gradients greatly differed among ferns, herbs, and trees.

Modelling the global distribution of fungal species: new insights into microbial cosmopolitanism.

Microbes are usually believed to have cosmopolitan distributions. However, for estimating the global distributions of microorganisms, discriminating among cryptic species and eliminating undersampling biases are important challenges. We used a novel approach to address these problems and infer the global distribution of a given fungal ecological guild. We collected mushroom-forming fungi from Yakushima, Japan. We sequenced the internal transcribed spacer 2 (ITS2) from these samples and queried their sequences against GenBank. After identifying similar sequences, we tracked down the geographical origins of samples that yielded those sequences. We used Bayesian zero-inflated models to allow for species whose DNA sequences have not yet been deposited in GenBank. Results indicated that the geographical distribution of ectomycorrhizal (ECM) fungi was strongly constrained by host specificity, resulting in the occurrence of these fungi intensively in the neighbouring regions. On the other hand, saprotrophic (SAP) fungi were less constrained by climatic conditions, resulting in a much broader distribution range. We inferred that differences in constraints during colonization between ECM and SAP fungi were responsible for the different geographical distribution ranges. We hypothesize that the degree of host/habitat specificity and the degree of isolation of potentially suitable habitats determine microbial biogeographic patterns.

Dietary adaptations of temperate primates: comparisons of Japanese and Barbary macaques.

Habitat, diet and leaf chemistry are compared between Japanese and Barbary macaques to reveal the similarities and differences in dietary adaptations of temperate primates living at the eastern and western extremes of the genus Macaca. Tree species diversity and proportion of fleshy-fruited species are much higher in Japan than in North Africa. Both species spend considerable annual feeding time on leaves. Japanese macaques prefer fruits and seeds over leaves, and Barbary macaques prefer seeds. These characteristics are adaptive in temperate regions where fruit availability varies considerably with season, since animals can survive during the lean period by relying on leaf and other vegetative foods. The two species are different with respect to the higher consumption of herbs by Barbary macaques, and the leaves consumed contain high condensed and hydrolysable tannin for Barbary but not for Japanese macaques. Barbary macaques supplement less diverse tree foods with herbs. Because of the low species diversity and high tannin content of the dominant tree species, Barbary macaques may have developed the capacity to cope with tannin. This supports the idea that digestion of leaves is indispensable to survive in temperate regions where fruit and seed foods are not available for a prolonged period during each year.

Topography-specific seed dispersal by Japanese macaques in a lowland forest on Yakushima Island, Japan.

1. We investigated patterns of seed dispersal (i.e. dispersal distances and topography of seed-deposition sites) via the cheek pouches of Japanese macaques (Macaca fuscata yakui) during three seasons in a lowland forest on Yakushima Island, Japan. 2. The mean seed-dispersal distances were 16.7, 26.1, 41.8, and 32.4 m from the trunks of mother trees of Myrica rubra, Persea thunbergii, Neolitsea sericea, and Litsea acuminata, respectively. 3. We assessed the possible effect of macaque foraging patterns and the spatial distribution of fruiting trees on topography-specific seed dispersal. The topography of the locations of macaques differed across seasons, likely because the spatial distribution of fruiting trees determined the seasonal foraging patterns of macaques. 4. In early summer, macaques foraged on a ridge and fed on fruits of M. rubra and P. thunbergii, which were primarily distributed and dispersed within this area. In contrast, during the winter, macaques foraged within a valley and fed on fruits of L. acuminata, which were chiefly distributed and dispersed within the valley. 5. Seeds of M. rubra, P. thunbergii, and L. acuminata were directly dispersed to the specific topographic areas in which adult trees were distributed and in which juveniles have a predictably high probability of survival relative to random sites.

Seedling establishment of five evergreen tree species in relation to topography, sika deer (Cervus nippon yakushimae) and soil surface environments.

We investigated the seedling survival of five evergreen tree species over 3 years inside and outside deer-exclusion fences in a warm temperate evergreen broad-leaved forest on Yakushima Island, Japan. Seedling survival was examined in relation to topography, herbivory by sika deer, and the soil surface environment (i.e., soil surface wetness, light conditions, slope inclination, and soil disturbance). The study species included Myrsine seguinii Lév., Syzygium buxifolium Hook. et Arn. (Group A: species distributed on the upper slope of the study site), Litsea accuminata (Bl.) Kurata, Schefflera octophylla (Lour.) Harms (Group B: species distributed on the lower slope), and Cleyera japonica Thunb. p.p. emend. Sieb. et Zucc. (Group C: species distributed on both slopes). The soil surface environment on the upper slope was drier, lighter, and more easily disturbed than the lower slope. Generalized linear model analyses indicated that seedling survival in fenced and unfenced quadrats was greater on the upper slope than on the lower slope for Group A and B species but not for Group C species. A micro-spatial scale analysis revealed that seedling survival was correlated with soil wetness, ground light conditions, and soil disturbance but not slope inclination. These results indicate that seedling survival was correlated with topography, sika deer herbivory, and the micro-spatial scale environment. Topography-related differences in seedling survival appear to adequately reflect the observed adult plant distributions for Group A and C species but not for Group B species.

Spatial distribution patterns of trees at different life stages in a warm temperate forest.

We have investigated tree distributions in relation to topography between different tree life history stages, from the seed-dispersal stage to the adult stage in a warm temperate evergreen broadleaved forest on Yakushima Island, Japan, to clarify the critical stages in determining adult tree distributions. We conducted a census of all living trees > or =30 cm tall and collected seed falls over three years using 25 seed traps in a 50 m x 50 m quadrat. Four life stages were defined: stage 1, dispersed seed; stage 2, individuals taller than 30 cm and diameter at breast height (DBH) < 1 cm; stage 3, trunks 1 cm < or = DBH < 10 cm; stage 4, trunks with DBH > or = 10 cm. We classified 17 common tree species into three groups; group A was distributed mainly on the upper slope, group B on the lower slope, and group C on both. Most of group A and B trees at stages 2-4 showed an aggregated distribution along the topographical gradient. The densities at stage 1 showed weaker aggregations according to slope. Topography-specific tree distribution was probably determined at the regeneration stage, and later survival was less effective as a mechanism of vegetation differentiation.