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1.
Molecules ; 20(5): 7657-82, 2015 Apr 27.
Article in English | MEDLINE | ID: mdl-25923515

ABSTRACT

Amyloid is a complex pathologic matrix comprised principally of paracrystalline protein fibrils and heparan sulfate proteoglycans. Systemic amyloid diseases are rare, thus, routine diagnosis is often challenging. The glycosaminoglycans ubiquitously present in amyloid deposits are biochemically and electrochemically distinct from those found in the healthy tissues due to the high degree of sulfation. We have exploited this unique property and evaluated heparin-reactive peptides, such as p5+14, as novel agents for specifically targeting and imaging amyloid. Herein, we demonstrate that radiolabeled p5+14 effectively bound murine AA amyloid in vivo by using molecular imaging. Biotinylated peptide also reacted with the major forms of human amyloid in tissue sections as evidenced immunohistochemically. Furthermore, we have demonstrated that the peptide also binds synthetic amyloid fibrils that lack glycosaminoglycans implying that the dense anionic motif present on heparin is mimicked by the amyloid protein fibril itself. These biochemical and functional data support the translation of radiolabeled peptide p5+14 for the clinical imaging of amyloid in patients.


Subject(s)
Amyloid/metabolism , Amyloidosis/diagnosis , Contrast Media/pharmacology , Peptides/pharmacology , Positron-Emission Tomography/methods , Tomography, Emission-Computed, Single-Photon/methods , Amino Acid Sequence , Amyloid/chemistry , Amyloidogenic Proteins/metabolism , Animals , Biotinylation , Contrast Media/chemical synthesis , Contrast Media/chemistry , Glycosaminoglycans/chemistry , Glycosaminoglycans/metabolism , Heparin/metabolism , Humans , Interleukin-6/biosynthesis , Interleukin-6/genetics , Iodine Radioisotopes/chemistry , Iodine Radioisotopes/pharmacokinetics , Mice , Mice, Inbred BALB C , Mice, Transgenic , Molecular Imaging/methods , Oligopeptides/chemical synthesis , Oligopeptides/chemistry , Oligopeptides/pharmacology , Peptides/chemical synthesis , Peptides/chemistry , Protein Binding
2.
Appl Environ Microbiol ; 77(17): 5934-44, 2011 Sep.
Article in English | MEDLINE | ID: mdl-21764952

ABSTRACT

The root-rhizosphere interface of Populus is the nexus of a variety of associations between bacteria, fungi, and the host plant and an ideal model for studying interactions between plants and microorganisms. However, such studies have generally been confined to greenhouse and plantation systems. Here we analyze microbial communities from the root endophytic and rhizospheric habitats of Populus deltoides in mature natural trees from both upland and bottomland sites in central Tennessee. Community profiling utilized 454 pyrosequencing with separate primers targeting the V4 region for bacterial 16S rRNA and the D1/D2 region for fungal 28S rRNA genes. Rhizosphere bacteria were dominated by Acidobacteria (31%) and Alphaproteobacteria (30%), whereas most endophytes were from the Gammaproteobacteria (54%) as well as Alphaproteobacteria (23%). A single Pseudomonas-like operational taxonomic unit (OTU) accounted for 34% of endophytic bacterial sequences. Endophytic bacterial richness was also highly variable and 10-fold lower than in rhizosphere samples originating from the same roots. Fungal rhizosphere and endophyte samples had approximately equal amounts of the Pezizomycotina (40%), while the Agaricomycotina were more abundant in the rhizosphere (34%) than endosphere (17%). Both fungal and bacterial rhizosphere samples were highly clustered compared to the more variable endophyte samples in a UniFrac principal coordinates analysis, regardless of upland or bottomland site origin. Hierarchical clustering of OTU relative abundance patterns also showed that the most abundant bacterial and fungal OTUs tended to be dominant in either the endophyte or rhizosphere samples but not both. Together, these findings demonstrate that root endophytic communities are distinct assemblages rather than opportunistic subsets of the rhizosphere.


Subject(s)
Bacteria/classification , Biodiversity , Fungi/classification , Plant Roots/microbiology , Populus/microbiology , Soil Microbiology , Bacteria/isolation & purification , DNA, Bacterial/chemistry , DNA, Bacterial/genetics , DNA, Fungal/chemistry , DNA, Fungal/genetics , DNA, Ribosomal/chemistry , DNA, Ribosomal/genetics , Fungi/isolation & purification , Genes, rRNA , RNA, Bacterial/genetics , RNA, Fungal/genetics , RNA, Ribosomal, 16S/genetics , RNA, Ribosomal, 18S/genetics , Rhizosphere , Sequence Analysis, DNA , Tennessee
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