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1.
Clin Neurol Neurosurg ; 238: 108175, 2024 03.
Article in English | MEDLINE | ID: mdl-38428059

ABSTRACT

INTRODUCTION: Ultrasonography (US) is used as a real-time dynamic imaging modality during neurosurgery. A novel Doppler US technique, Superb Microvascular Imaging (SMI), can be used to visualize low-velocity flow of small vessels at high resolution with high frame rates. We visualized vessel flow using this US SMI technique and contrast agent during cerebrovascular surgery. METHODS: Forty-three patients with an unruptured cerebral aneurysm (control), ischemic and hemorrhagic moyamoya disease, carotid artery stenosis, hemangioblastoma, severe stenosis of the middle cerebral artery, venous angioma, and intracerebral hemorrhage (ICH) underwent neurosurgery with US SMI monitoring using a contrast agent. The diameter, length, and number of penetrating vessels were analyzed in patients with an unruptured cerebral aneurysm (control), moyamoya disease, and ICH. RESULTS: Diameter and length of cerebral penetrating vessels were significantly increased in patients with moyamoya disease and ICH compared to control patients. The number of penetrating vessels was increased in moyamoya disease patients compared to control and ICH patients. In hemorrhagic moyamoya disease, flow in the penetrating vessels originated from a deep periventricular point and extended to the cerebral surface. Pulsatile cerebral aneurysms during clipping surgery and carotid artery stenosis during carotid endarterectomy were easily identified by SMI. Drastically increased vessel flow in patients with a hemangioblastoma or a venous angioma was observed. CONCLUSION: Using the US SMI technique and contrast agent, we obtained useful flow information of the vascular disease structure and intracerebral deep small vessels during cerebrovascular surgery. Further quantitative analysis will be informative and helpful for cerebrovascular surgery.


Subject(s)
Carotid Stenosis , Hemangioblastoma , Intracranial Aneurysm , Moyamoya Disease , Humans , Moyamoya Disease/diagnostic imaging , Moyamoya Disease/surgery , Contrast Media , Intracranial Aneurysm/diagnostic imaging , Intracranial Aneurysm/surgery , Ultrasonography , Cerebral Hemorrhage/diagnostic imaging , Cerebral Hemorrhage/surgery , Cerebrovascular Circulation
2.
Sci Adv ; 8(51): eade5155, 2022 Dec 23.
Article in English | MEDLINE | ID: mdl-36563138

ABSTRACT

Efficient depolymerization of crystalline cellulose requires cooperation between multiple cellulolytic enzymes. Through biochemical approaches, molecular dynamics (MD) simulation, and single-molecule observations using high-speed atomic force microscopy (HS-AFM), we quantify and track synergistic activity for cellobiohydrolases (CBHs) with a lytic polysaccharide monooxygenase (LPMO) from Phanerochaete chrysosporium. Increasing concentrations of LPMO (AA9D) increased the activity of a glycoside hydrolase family 6 CBH, Cel6A, whereas the activity of a family 7 CBH (Cel7D) was enhanced only at lower concentrations of AA9D. MD simulation suggests that the result of AA9D action to produce chain breaks in crystalline cellulose can oxidatively disturb the crystalline surface by disrupting hydrogen bonds. HS-AFM observations showed that AA9D increased the number of Cel7D molecules moving on the substrate surface and increased the processivity of Cel7D, thereby increasing the depolymerization performance, suggesting that AA9D not only generates chain ends but also amorphizes the crystalline surface, thereby increasing the activity of CBHs.

3.
Brain Tumor Pathol ; 38(3): 250-256, 2021 Jul.
Article in English | MEDLINE | ID: mdl-33837479

ABSTRACT

Rosette-forming glioneuronal tumors (RGNTs) are benign WHO grade 1 tumors that occur in the ventricular system, particularly the fourth ventricle. RGNTs and dysembryoplastic neuroepithelial tumors (DNTs) are both categorized as neuronal and mixed neuronal-glial tumors and may be difficult to distinguish. Coexistence of the two tumor types has been reported. Here, we report a pediatric case of RGNT with DNT-like features showing intraventricular dissemination. The tumor occurred in the medial temporal lobe and presented with specific pathological glioneuronal elements including floating neurons, which are typical in DNTs, but was diagnosed as RGNT because of the presence of neurocytic rosettes. Genetic analysis detected fibroblast growth factor receptor 1 internal tandem duplication (FGFR1-ITD) of the tyrosine kinase domain, which was previously reported to be specific for DNT. RGNTs with FGFR1-ITD may show atypical clinical presentation and pathological features.


Subject(s)
Brain Neoplasms/genetics , Brain Neoplasms/pathology , Neoplasms, Neuroepithelial/genetics , Neoplasms, Neuroepithelial/pathology , Receptor, Fibroblast Growth Factor, Type 1/genetics , Tandem Repeat Sequences/genetics , Brain Neoplasms/diagnostic imaging , Child , Humans , Magnetic Resonance Imaging , Male , Neoplasms, Neuroepithelial/diagnostic imaging , Temporal Lobe/pathology
4.
J Craniofac Surg ; 32(5): e475-e477, 2021.
Article in English | MEDLINE | ID: mdl-33741871

ABSTRACT

ABSTRACT: The authors report a case of a rare, large, nodular pseudogout which developed from the temporomandibular joint (TMJ).An 83-year-old female was referred to the hospital with swelling on her left cheek. Imaging studies revealed a large calcified mass surrounding the left mandibular condyle, partially destroying the adjoining bone and extending to the skull base. Magnetic resonance imaging (MRI) revealed soft tissue masses with low signal intensity on T1- and T2-weighted images and were enhanced after intravenous gadolinium injection.The mass was clinically and radiologically suspected to be a neoplastic lesion, such as chondrosarcoma or fibrous dysplasia. However, histological analysis showed that the mass contained granulomatous lesions with numerous multiple nodular rod-shaped and diamond-shaped crystal deposits, which validated the diagnosis of pseudogout. X-ray diffraction (XRD) was performed to identify the tumor's deposited materials and revealed that these were calcium pyrophosphate dihydrate (CPPD) crystals. This result confirmed the histopathological diagnosis of "tophaceous pseudogout."


Subject(s)
Bone Neoplasms , Chondrocalcinosis , Aged, 80 and over , Chondrocalcinosis/diagnostic imaging , Female , Humans , Mandibular Condyle , Skull Base/diagnostic imaging , Temporomandibular Joint
5.
J Biol Chem ; 295(43): 14606-14617, 2020 10 23.
Article in English | MEDLINE | ID: mdl-32816991

ABSTRACT

Cellobiohydrolases directly convert crystalline cellulose into cellobiose and are of biotechnological interest to achieve efficient biomass utilization. As a result, much research in the field has focused on identifying cellobiohydrolases that are very fast. Cellobiohydrolase A from the bacterium Cellulomonas fimi (CfCel6B) and cellobiohydrolase II from the fungus Trichoderma reesei (TrCel6A) have similar catalytic domains (CDs) and show similar hydrolytic activity. However, TrCel6A and CfCel6B have different cellulose-binding domains (CBDs) and linkers: TrCel6A has a glycosylated peptide linker, whereas CfCel6B's linker consists of three fibronectin type 3 domains. We previously found that TrCel6A's linker plays an important role in increasing the binding rate constant to crystalline cellulose. However, it was not clear whether CfCel6B's linker has similar function. Here we analyze kinetic parameters of CfCel6B using single-molecule fluorescence imaging to compare CfCel6B and TrCel6A. We find that CBD is important for initial binding of CfCel6B, but the contribution of the linker to the binding rate constant or to the dissociation rate constant is minor. The crystal structure of the CfCel6B CD showed longer loops at the entrance and exit of the substrate-binding tunnel compared with TrCel6A CD, which results in higher processivity. Furthermore, CfCel6B CD showed not only fast surface diffusion but also slow processive movement, which is not observed in TrCel6A CD. Combined with the results of a phylogenetic tree analysis, we propose that bacterial cellobiohydrolases are designed to degrade crystalline cellulose using high-affinity CBD and high-processivity CD.


Subject(s)
Bacterial Proteins/chemistry , Cellulomonas/enzymology , Cellulose 1,4-beta-Cellobiosidase/chemistry , Fungal Proteins/chemistry , Hypocreales/enzymology , Bacterial Proteins/metabolism , Binding Sites , Catalytic Domain , Cellulomonas/chemistry , Cellulomonas/metabolism , Cellulose/metabolism , Cellulose 1,4-beta-Cellobiosidase/metabolism , Crystallography, X-Ray , Fungal Proteins/metabolism , Hypocreales/chemistry , Hypocreales/metabolism , Models, Molecular , Protein Binding , Protein Conformation , Protein Domains , Substrate Specificity
6.
Proc Natl Acad Sci U S A ; 117(33): 19896-19903, 2020 08 18.
Article in English | MEDLINE | ID: mdl-32747547

ABSTRACT

Cellulose is the most abundant biomass on Earth, and many microorganisms depend on it as a source of energy. It consists mainly of crystalline and amorphous regions, and natural degradation of the crystalline part is highly dependent on the degree of processivity of the degrading enzymes (i.e., the extent of continuous hydrolysis without detachment from the substrate cellulose). Here, we report high-speed atomic force microscopic (HS-AFM) observations of the movement of four types of cellulases derived from the cellulolytic bacteria Cellulomonas fimi on various insoluble cellulose substrates. The HS-AFM images clearly demonstrated that two of them (CfCel6B and CfCel48A) slide on crystalline cellulose. The direction of processive movement of CfCel6B is from the nonreducing to the reducing end of the substrate, which is opposite that of processive cellulase Cel7A of the fungus Trichoderma reesei (TrCel7A), whose movement was first observed by this technique, while CfCel48A moves in the same direction as TrCel7A. When CfCel6B and TrCel7A were mixed on the same substrate, "traffic accidents" were observed, in which the two cellulases blocked each other's progress. The processivity of CfCel6B was similar to those of fungal family 7 cellulases but considerably higher than those of fungal family 6 cellulases. The results indicate that bacteria utilize family 6 cellulases as high-processivity enzymes for efficient degradation of crystalline cellulose, whereas family 7 enzymes have the same function in fungi. This is consistent with the idea of convergent evolution of processive cellulases in fungi and bacteria to achieve similar functionality using different protein foldings.


Subject(s)
Bacterial Proteins/chemistry , Cellulases/chemistry , Cellulomonas/enzymology , Fungal Proteins/chemistry , Bacterial Proteins/genetics , Bacterial Proteins/metabolism , Biocatalysis , Biological Evolution , Cellulases/genetics , Cellulases/metabolism , Cellulomonas/chemistry , Cellulomonas/genetics , Cellulomonas/metabolism , Cellulose/chemistry , Cellulose/metabolism , Fungal Proteins/genetics , Fungal Proteins/metabolism , Kinetics , Microscopy, Atomic Force
7.
Epilepsy Behav Rep ; 13: 100356, 2020.
Article in English | MEDLINE | ID: mdl-32637908

ABSTRACT

An epileptic seizure during the course of driving can result in a serious car accident. However, basic data on how epileptic seizures actually affect driving performance is significantly lacking. To understand the relationship, it is crucial to conduct not only behavioral but also electroencephalogram (EEG) analysis during epileptic seizures. Therefore, we developed a mobile driving simulator which makes it possible to record driving-related parameters time-lined with video-EEG. We report a case in which behavioral and EEG changes were successfully recorded during ictal periods of focal impaired awareness seizure in a patient engaged with the system. With the current lack of objective data describing how seizures impair driving performance, such an accumulation of information could improve personalized medical management, influence legal adjudication and assist in the development of driving support systems for people with epilepsy.

8.
Sci Rep ; 8(1): 15149, 2018 10 11.
Article in English | MEDLINE | ID: mdl-30310166

ABSTRACT

Certain methanogens deteriorate steel surfaces through a process called microbiologically influenced corrosion (MIC). However, the mechanisms of MIC, whereby methanogens oxidize zerovalent iron (Fe0), are largely unknown. In this study, Fe0-corroding Methanococcus maripaludis strain OS7 and its derivative (strain OS7mut1) defective in Fe0-corroding activity were isolated. Genomic analysis of these strains demonstrated that the strain OS7mut1 contained a 12-kb chromosomal deletion. The deleted region, termed "MIC island", encoded the genes for the large and small subunits of a [NiFe] hydrogenase, the TatA/TatC genes necessary for the secretion of the [NiFe] hydrogenase, and a gene for the hydrogenase maturation protease. Thus, the [NiFe] hydrogenase may be secreted outside the cytoplasmic membrane, where the [NiFe] hydrogenase can make direct contact with Fe0, and oxidize it, generating hydrogen gas: Fe0 + 2 H+ → Fe2+ + H2. Comparative analysis of extracellular and intracellular proteomes of strain OS7 supported this hypothesis. The identification of the MIC genes enables the development of molecular tools to monitor epidemiology, and to perform surveillance and risk assessment of MIC-inducing M. maripaludis.


Subject(s)
Genome, Bacterial , Genomic Islands , Hydrogenase/genetics , Hydrogenase/metabolism , Iron/metabolism , Methanococcus/genetics , Methanococcus/metabolism , Anti-Bacterial Agents/pharmacology , Base Sequence , Corrosion , Gene Order , Genomic Instability , Methanococcus/drug effects , Microbial Sensitivity Tests , Models, Theoretical , Oxidation-Reduction
9.
Biotechnol Biofuels ; 9: 199, 2016.
Article in English | MEDLINE | ID: mdl-27660653

ABSTRACT

BACKGROUND: Random mutagenesis is a powerful technique to obtain mutant proteins with different properties from the wild-type molecule. Error-prone PCR is often employed for random mutagenesis in bacterial protein expression systems, but has rarely been used in the methylotrophic yeast Pichia pastoris system, despite its significant advantages, mainly because large (µg-level) amounts of plasmids are required for transformation. RESULTS: We developed a quick and easy technique for random mutagenesis in P. pastoris by sequential Phi29 DNA polymerase-based amplification methods, error-prone rolling circle amplification (RCA) and multiple displacement amplification (MDA). The methodology was validated by applying it for random mutation of the gene encoding cellulase from the basidiomycete Phanerochaete chrysosporium (PcCel6A), a key enzyme in degradation of cellulosic biomass. In the error-prone RCA step, the concentrations of manganese ion (Mn(2+)) and cellulase gene-containing plasmid were varied, and the products obtained under each condition were subjected to the second MDA step in the absence of Mn(2+). The maximum error rate was 2.6 mutations/kb, as evaluated from the results of large-scale sequencing. Several µg of MDA products was transformed by electroporation into Pichia cells, and the activities of extracellularly expressed PcCel6A mutants towards crystalline and amorphous celluloses were compared with those of wild-type enzyme to identify key amino acid residues affecting degradation of crystalline cellulose. CONCLUSIONS: We present a rapid and convenient random mutagenesis method that does not require laborious steps such as ligation, cloning, and synthesis of specific primers. This method was successfully applied to the protein expression system in P. pastoris.

10.
J Biol Chem ; 291(43): 22404-22413, 2016 Oct 21.
Article in English | MEDLINE | ID: mdl-27609516

ABSTRACT

Trichoderma reesei Cel6A (TrCel6A) is a cellobiohydrolase that hydrolyzes crystalline cellulose into cellobiose. Here we directly observed the reaction cycle (binding, surface movement, and dissociation) of single-molecule intact TrCel6A, isolated catalytic domain (CD), cellulose-binding module (CBM), and CBM and linker (CBM-linker) on crystalline cellulose Iα The CBM-linker showed a binding rate constant almost half that of intact TrCel6A, whereas those of the CD and CBM were only one-tenth of intact TrCel6A. These results indicate that the glycosylated linker region largely contributes to initial binding on crystalline cellulose. After binding, all samples showed slow and fast dissociations, likely caused by the two different bound states due to the heterogeneity of cellulose surface. The CBM showed much higher specificity to the high affinity site than to the low affinity site, whereas the CD did not, suggesting that the CBM leads the CD to the hydrophobic surface of crystalline cellulose. On the cellulose surface, intact molecules showed slow processive movements (8.8 ± 5.5 nm/s) and fast diffusional movements (30-40 nm/s), whereas the CBM-Linker, CD, and a catalytically inactive full-length mutant showed only fast diffusional movements. These results suggest that both direct binding and surface diffusion contribute to searching of the hydrolysable point of cellulose chains. The duration time constant for the processive movement was 7.7 s, and processivity was estimated as 68 ± 42. Our results reveal the role of each domain in the elementary steps of the reaction cycle and provide the first direct evidence of the processive movement of TrCel6A on crystalline cellulose.


Subject(s)
Cellulose 1,4-beta-Cellobiosidase/chemistry , Cellulose/chemistry , Fungal Proteins/chemistry , Trichoderma/enzymology , Cellulose 1,4-beta-Cellobiosidase/genetics , Fungal Proteins/genetics , Protein Domains , Trichoderma/genetics
11.
FEBS J ; 283(12): 2340-53, 2016 06.
Article in English | MEDLINE | ID: mdl-27092463

ABSTRACT

UNLABELLED: ß-Glucosidase Td2F2 isolated from a compost metagenome has high glucose tolerance and transglycosylation activity. In this study, we determined the high-resolution crystal structure of Td2F2. It has a unique structure at the -1 subsite that is important for substrate specificity but not for glucose tolerance. To elucidate the mechanism(s) of glucose tolerance, we isolated a glucose-sensitive Td2F2 mutant using random mutagenesis. In this mutant, Asn223 residue located between subsites +1 and +2 was mutated. The Asn223 mutation resulted in reduced glucose tolerance and transglycosylation activity, and drastically changed substrate specificity. These results indicate that the structure between subsites +1 and +2 is critical for the glucose tolerance and substrate specificity of Td2F2. Our findings shed light on the glucose tolerance and transglycosylation activity mechanisms of glycoside hydrolase family 1 ß-glucosidases. DATABASE: The atomic coordinates and structure factors (codes 3WH5, 3WH6, 3WH8, 3WH7, 5AYB, and 5AYI) have been deposited in the Protein Data Bank (http://wwpdb.org/).


Subject(s)
Amino Acids/chemistry , Metagenome , Protein Conformation , beta-Glucosidase/chemistry , Amino Acid Sequence/genetics , Amino Acids/genetics , Crystallography, X-Ray , Glucose/chemistry , Glucose/metabolism , Glycosylation , Kinetics , Models, Molecular , Substrate Specificity , beta-Glucosidase/genetics
12.
No Shinkei Geka ; 44(2): 143-8, 2016 Feb.
Article in Japanese | MEDLINE | ID: mdl-26856268

ABSTRACT

Aplastic or twig-like middle cerebral artery (Ap/T-MCA) is a rare anatomical anomaly, which can be associated with intracranial hemorrhage and cerebral ischemia. A 52-year-old woman who presented with sudden headache was admitted to our hospital. Computed tomography (CT) and magnetic resonance imaging showed no abnormality; however, magnetic resonance angiogram revealed an occlusion or severe stenosis in the left middle cerebral artery. Three-dimensional CT angiography demonstrated severe stenosis in the left middle cerebral artery. The patient was discharged without any neurological deficit; however, she subsequently complained of temporary weakness in the right hand. It was possibly due to a transient ischemic attack; therefore, cilostazol 200 mg/day was administered for prevention of cerebral ischemia. Single photon emission computed tomography(with or without administration of acetazolamide)showed neither significant decrease in the cerebral blood flow nor cerebrovascular reactivity; hence, surgical revascularization was not performed. However, two years after the initial admission, she was urgently admitted to our hospital with sudden headache and nausea followed by aphasia and weakness of the right extremities. CT images showed diffuse subarachnoid hemorrhage and intracerebral hemorrhage in the left temporo-parietal lobe. Cerebral angiography revealed that the left middle cerebral artery was Ap/T-MCA without cerebral aneurysms. The patient was treated conservatively, and she eventually recovered without any neurological deficit except mild aphasia. Since Ap/T-MCA is associated with both hemorrhagic and ischemic stroke, antiplatelet therapy should be administered carefully. Moreover, it is necessary to consider extracranial-intracranial bypass to reduce hemodynamic stress on the abnormal vessels.


Subject(s)
Intracranial Aneurysm/surgery , Ischemic Attack, Transient/surgery , Middle Cerebral Artery/surgery , Subarachnoid Hemorrhage/surgery , Cerebral Angiography/methods , Female , Humans , Intracranial Aneurysm/diagnosis , Middle Aged , Subarachnoid Hemorrhage/complications , Treatment Outcome
13.
Front Microbiol ; 6: 548, 2015.
Article in English | MEDLINE | ID: mdl-26136726

ABSTRACT

ß-glucosidases (BGLs) hydrolyze cello-oligosaccharides to glucose and play a crucial role in the enzymatic saccharification of cellulosic biomass. Despite their significance for the production of glucose, most identified BGLs are commonly inhibited by low (∼mM) concentrations of glucose. Therefore, BGLs that are insensitive to glucose inhibition have great biotechnological merit. We applied a metagenomic approach to screen for such rare glucose-tolerant BGLs. A metagenomic library was created in Escherichia coli (∼10,000 colonies) and grown on LB agar plates containing 5-bromo-4-chloro-3-indolyl-ß-D-glucoside, yielding 828 positive (blue) colonies. These were then arrayed in 96-well plates, grown in LB, and secondarily screened for activity in the presence of 10% (w/v) glucose. Seven glucose-tolerant clones were identified, each of which contained a single bgl gene. The genes were classified into two groups, differing by two nucleotides. The deduced amino acid sequences of these genes were identical (452 aa) and found to belong to the glycosyl hydrolase family 1. The recombinant protein (Ks5A7) was overproduced in E. coli as a C-terminal 6 × His-tagged protein and purified to apparent homogeneity. The molecular mass of the purified Ks5A7 was determined to be 54 kDa by SDS-PAGE, and 160 kDa by gel filtration analysis. The enzyme was optimally active at 45°C and pH 5.0-6.5 and retained full or 1.5-2-fold enhanced activity in the presence of 0.1-0.5 M glucose. It had a low KM (78 µM with p-nitrophenyl ß-D-glucoside; 0.36 mM with cellobiose) and high V max (91 µmol min(-1) mg(-1) with p-nitrophenyl ß-D-glucoside; 155 µmol min(-1) mg(-1) with cellobiose) among known glucose-tolerant BGLs and was free from substrate (0.1 M cellobiose) inhibition. The efficient use of Ks5A7 in conjunction with Trichoderma reesei cellulases in enzymatic saccharification of alkaline-treated rice straw was demonstrated by increased production of glucose.

14.
Interv Neuroradiol ; 21(4): 451-5, 2015 Aug.
Article in English | MEDLINE | ID: mdl-26111982

ABSTRACT

Double origin of the posterior inferior cerebellar artery (DOPICA) is a rare anatomical variation, and can be associated with intracranial aneurysm formation. We describe a 66-year-old woman case of a ruptured aneurysm involved in a DOPICA. We performed aneurysmal coil embolization for the ruptured aneurysm involved in the cranial channel of DOPICA, but the aneurysm relapsed two months later. We subsequently performed internal trapping of the cranial channel because of well visualization of the distal flow by the balloon occlusion test. Endovascular trapping of a channel is one of the effective treatments of an aneurysm involved in DOPICA.


Subject(s)
Aneurysm, Ruptured/therapy , Cerebellar Diseases/therapy , Cerebral Arteries , Embolization, Therapeutic/methods , Intracranial Aneurysm/therapy , Aged , Aneurysm, Ruptured/diagnostic imaging , Angioplasty, Balloon , Cerebellar Diseases/diagnostic imaging , Cerebellum/blood supply , Cerebral Angiography , Cerebral Arteries/diagnostic imaging , Female , Humans , Intracranial Aneurysm/diagnostic imaging , Recurrence , Subarachnoid Hemorrhage/diagnostic imaging , Subarachnoid Hemorrhage/therapy , Tomography, X-Ray Computed
15.
Nat Commun ; 5: 3975, 2014 Jun 04.
Article in English | MEDLINE | ID: mdl-24894873

ABSTRACT

Processivity refers to the ability of synthesizing, modifying and degrading enzymes to catalyse multiple successive cycles of reaction with polymeric substrates without disengaging from the substrates. Since biomass polysaccharides, such as chitin and cellulose, often form recalcitrant crystalline regions, their degradation is highly dependent on the processivity of degrading enzymes. Here we employ high-speed atomic force microscopy to directly visualize the movement of two processive glycoside hydrolase family 18 chitinases (ChiA and ChiB) from the chitinolytic bacterium Serratia marcescens on crystalline ß-chitin. The half-life of processive movement and the velocity of ChiA are larger than those of ChiB, suggesting that asymmetric subsite architecture determines both the direction and the magnitude of processive degradation of crystalline polysaccharides. The directions of processive movements of ChiA and ChiB are observed to be opposite. The molecular mechanism of the two-way traffic is discussed, including a comparison with the processive cellobiohydrolases of the cellulolytic system.


Subject(s)
Bacterial Proteins/metabolism , Chitin/metabolism , Chitinases/metabolism , Serratia marcescens/metabolism , Microscopy, Atomic Force , Protein Transport
16.
PLoS One ; 8(9): e75795, 2013.
Article in English | MEDLINE | ID: mdl-24098725

ABSTRACT

We applied a metagenomics approach to screen for transcriptional regulators that sense aromatic compounds. The library was constructed by cloning environmental DNA fragments into a promoter-less vector containing green fluorescence protein. Fluorescence-based screening was then performed in the presence of various aromatic compounds. A total of 12 clones were isolated that fluoresced in response to salicylate, 3-methyl catechol, 4-chlorocatechol and chlorohydroquinone. Sequence analysis revealed at least 1 putative transcriptional regulator, excluding 1 clone (CHLO8F). Deletion analysis identified compound-specific transcriptional regulators; namely, 8 LysR-types, 2 two-component-types and 1 AraC-type. Of these, 9 representative clones were selected and their reaction specificities to 18 aromatic compounds were investigated. Overall, our transcriptional regulators were functionally diverse in terms of both specificity and induction rates. LysR- and AraC- type regulators had relatively narrow specificities with high induction rates (5-50 fold), whereas two-component-types had wide specificities with low induction rates (3 fold). Numerous transcriptional regulators have been deposited in sequence databases, but their functions remain largely unknown. Thus, our results add valuable information regarding the sequence-function relationship of transcriptional regulators.


Subject(s)
Bacteria/genetics , Hydrocarbons, Aromatic/toxicity , Metagenome/genetics , Regulatory Elements, Transcriptional/drug effects , Regulatory Elements, Transcriptional/genetics , Base Sequence , Catechols , Cloning, Molecular , Escherichia coli , Gene Library , Genetic Vectors/genetics , Green Fluorescent Proteins/genetics , Hydroquinones , Metagenomics , Molecular Sequence Data , Polymorphism, Restriction Fragment Length , Sequence Analysis, DNA
17.
No Shinkei Geka ; 41(8): 697-702, 2013 Aug.
Article in Japanese | MEDLINE | ID: mdl-23907477

ABSTRACT

A 29-year-old woman complained of headache and nausea several hours after delivery, followed by mild disturbance of consciousness. Physical examination revealed hypertension, systemic edema, nystagmus, dysarthria, and cerebellar ataxia. Computed tomography showed low attenuation areas in the cerebellum, and MR imaging revealed vasogenic edema in the cerebellum. MR angiography and MR venography demonstrated no significant abnormalities. We diagnosed a cerebellar variant of posterior reversible encephalopathy syndrome(PRES), and treated the patient immediately with antihypertensive drug and diuretic. The symptoms dramatically improved and MR imaging ten days after admission revealed disappearance of the vasogenic edema in the cerebellum. She was discharged without any sequelae. Though a cerebellar variant of PRES is very rare, rapid diagnosis and treatment is important for good prognosis when the disease is encountered.


Subject(s)
Antihypertensive Agents/therapeutic use , Cerebellum/pathology , Posterior Leukoencephalopathy Syndrome/drug therapy , Adult , Brain Edema/complications , Brain Edema/drug therapy , Brain Edema/pathology , Early Diagnosis , Female , Humans , Hypertension/complications , Hypertension/drug therapy , Magnetic Resonance Angiography/methods , Posterior Leukoencephalopathy Syndrome/diagnosis , Postpartum Period/physiology , Tomography, X-Ray Computed/methods , Treatment Outcome
18.
J Biol Chem ; 288(25): 18325-34, 2013 Jun 21.
Article in English | MEDLINE | ID: mdl-23661705

ABSTRACT

The ß-glucosidase encoded by the td2f2 gene was isolated from a compost microbial metagenomic library by functional screening. The protein was identified to be a member of the glycoside hydrolase family 1 and was overexpressed in Escherichia coli, purified, and biochemically characterized. The recombinant ß-glucosidase, Td2F2, exhibited enzymatic activity with ß-glycosidic substrates, with preferences for glucose, fucose, and galactose. Hydrolysis occurred at the nonreducing end and in an exo manner. The order of catalytic efficiency for glucodisaccharides and cellooligosaccharides was sophorose > cellotetraose > cellotriose > laminaribiose > cellobiose > cellopentaose > gentiobiose, respectively. Intriguingly, the p-nitrophenyl-ß-D-glucopyranoside hydrolysis activity of Td2F2 was activated by various monosaccharides and sugar alcohols. At a D-glucose concentration of 1000 mM, enzyme activity was 6.7-fold higher than that observed in the absence of D-glucose. With 31.3 mM D-glucose, Td2F2 catalyzed transglycosylation to generate sophorose, laminaribiose, cellobiose, and gentiobiose. Transglycosylation products were detected under all activated conditions, suggesting that the activity enhancement induced by monosaccharides and sugar alcohols may be due to the transglycosylation activity of the enzyme. These results show that Td2F2 obtained from a compost microbial metagenome may be a potent candidate for industrial applications.


Subject(s)
Genomic Library , Metagenome/genetics , Soil Microbiology , beta-Glucosidase/genetics , Amino Acid Sequence , Biocatalysis/drug effects , Cellobiose/metabolism , Disaccharides/metabolism , Fucose/metabolism , Galactose/metabolism , Glucans/metabolism , Glucose/metabolism , Glycosides/metabolism , Glycosylation , Hydrogen-Ion Concentration , Kinetics , Molecular Sequence Data , Monosaccharides/pharmacology , Sequence Homology, Amino Acid , Substrate Specificity , Sugar Alcohols/pharmacology , Temperature , beta-Glucosidase/metabolism
19.
No Shinkei Geka ; 41(3): 229-34, 2013 Mar.
Article in Japanese | MEDLINE | ID: mdl-23459520

ABSTRACT

We report a case of blood blister-like aneurysm(BBA)on the posterior wall of the internal carotid artery(ICA)causing subarachnoid hemorrhage(SAH). A 45-year-old man suffering from SAH(WFNS grade 5)was referred to our hospital. 3D-CT angiography showed a BBA on the posterior wall of the ICA. The aneurysm had been enlarged for a few days. Therefore we performed coil embolization. Four weeks after the operation, the aneurysm was found to have regrown. In the second operation the aneurysm was successfully treated by the ICA proximal occlusion with extracranial-intracranial bypass. Postoperative follow-up cerebral angiography detected no aneurysm. To our knowledge, BBA on the posterior wall of the ICA is rare. Radical surgery with bypass should be performed as soon as possible when the BBA is found to regrow. We discuss the clinical characteristics with a review of the literature.


Subject(s)
Carotid Artery, Internal/surgery , Embolization, Therapeutic , Intracranial Aneurysm/surgery , Posterior Cerebral Artery/surgery , Subarachnoid Hemorrhage/etiology , Carotid Artery, Internal/diagnostic imaging , Cerebral Angiography/methods , Embolization, Therapeutic/methods , Humans , Intracranial Aneurysm/complications , Male , Middle Aged , Neurosurgical Procedures/methods , Posterior Cerebral Artery/diagnostic imaging , Subarachnoid Hemorrhage/surgery
20.
No Shinkei Geka ; 40(4): 359-63, 2012 Apr.
Article in Japanese | MEDLINE | ID: mdl-22466236

ABSTRACT

We report the case of a 24-year-old woman with cervicothoracic subpial lipoma not associated with spinal dysraphism. She complained of back pain, gait disturbance, and sensory disturbance of the both lower extremities. MRI revealed a hyperintense mass lesion that was dorsolateral to the spinal cord in the intradural region between C7 and Th4 on both T1 and T2 weighted images. Axial T2 weighted images showed dorsal nerve roots passing through the mass. A thoracic laminectomy between Th1 and Th4 was performed. A yellowish subpial mass was found after the dura was opened, and the borderline between the tumor and the normal spinal cord was unclear. The mass was partially resected and intraoperative SEP monitoring data remained unchanged. Dural plasty using artificial dura was performed. Histological examination revealed mature adipose and connective tissues, a fact which was compatible with a diagnosis of lipoma. Postoperatively, no complications occurred. The patient's gait disturbance and hypesthesia of the right lower extremity slightly improved. Subpial spinal lipoma not associated with dysraphism is rare and accounts for only 1% of all spinal tumors. A slow ascending spastic monoparesis or paraparesis is a common initial symptom. However, once symptoms progress, further deterioration is rapid. Therefore, early surgical decompression and debulking of the subpial lipoma in patients with neurological abnormalities is recommended because most symptomatic patients do not improve after surgery.


Subject(s)
Lipoma/surgery , Spinal Neoplasms/surgery , Dura Mater , Female , Humans , Laminectomy , Neck , Thorax , Young Adult
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