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1.
CBE Life Sci Educ ; 21(4): ar61, 2022 12.
Article in English | MEDLINE | ID: mdl-36112617

ABSTRACT

Student-centered pedagogies promote student learning in college science, technology, engineering, and mathematics (STEM) classrooms. However, transitioning to active learning from traditional lecturing may be challenging for both students and instructors. This case study presents the development, implementation, and assessment of a modified collaborative teaching (CT) and team-based learning (TBL) approach (CT plus TBL, or CT+) in an introductory biology course at a Minority-Serving Institution. A logic model was formulated depicting the various assessment practices with the culminating goal of improving the student learning experience. We analyzed qualitative and quantitative data based on students and instructors' behaviors and discourse, and student midsemester and end-of-semester surveys. Our findings revealed that the integration of multiple instructors allowed for knowledge exchange in blending complementary behaviors and discourse practices during class sessions. In addition, the frequent ongoing assessments and incorporation of student feedback informed the CT+ design during both in-person and emergency remote teaching. Furthermore, this course design could be easily adapted to a variety of STEM courses in higher education, including remote instruction.


Subject(s)
Problem-Based Learning , Students , Biology/education , Engineering/education , Humans , Tomography, X-Ray Computed
2.
Hum Genet ; 139(10): 1261-1272, 2020 Oct.
Article in English | MEDLINE | ID: mdl-32318854

ABSTRACT

Nonsyndromic cleft lip with or without cleft palate (NSCLP) is a common birth defect for which only ~ 20% of the underlying genetic variation has been identified. Variants in noncoding regions have been increasingly suggested to contribute to the missing heritability. In this study, we investigated whether variation in craniofacial enhancers contributes to NSCLP. Candidate enhancers were identified using VISTA Enhancer Browser and previous publications. Prioritization was based on patterning defects in knockout mice, deletion/duplication of craniofacial genes in animal models and results of whole exome/whole genome sequencing studies. This resulted in 20 craniofacial enhancers to be investigated. Custom amplicon-based sequencing probes were designed and used for sequencing 380 NSCLP probands (from multiplex and simplex families of non-Hispanic white (NHW) and Hispanic ethnicities) using Illumina MiSeq. The frequencies of identified variants were compared to ethnically matched European (CEU) and Los Angeles Mexican (MXL) control genomes and used for association analyses. Variants in mm427/MSX1 and hs1582/SPRY1 showed genome-wide significant association with NSCLP (p ≤ 6.4 × 10-11). In silico analysis showed that these enhancer variants may disrupt important transcription factor binding sites. Haplotypes involving these enhancers and also mm435/ABCA4 were significantly associated with NSCLP, especially in NHW (p ≤ 6.3 × 10-7). Importantly, groupwise burden analysis showed several enhancer combinations significantly over-represented in NSCLP individuals, revealing novel NSCLP pathways and supporting a polygenic inheritance model. Our findings support the role of craniofacial enhancer sequence variation in the etiology of NSCLP.


Subject(s)
Cleft Lip/genetics , Cleft Palate/genetics , Enhancer Elements, Genetic , Genetic Predisposition to Disease , Genetic Variation , Multifactorial Inheritance , ATP-Binding Cassette Transporters/genetics , Animals , Asymptomatic Diseases , Cleft Lip/ethnology , Cleft Lip/pathology , Cleft Palate/ethnology , Cleft Palate/pathology , Embryo, Mammalian , Female , Genetic Association Studies , High-Throughput Nucleotide Sequencing , Hispanic or Latino , Humans , MSX1 Transcription Factor/genetics , Male , Membrane Proteins/genetics , Mice , Pedigree , Phosphoproteins/genetics , United States , White People
3.
Injury ; 50(12): 2312-2317, 2019 Dec.
Article in English | MEDLINE | ID: mdl-31630782

ABSTRACT

OBJECTIVES: To review a case series of patients with posterior pilon variant fracture using a novel approach, focusing on demographic data, injury pattern, surgical results based on computed tomography (CT) scan, and short-term complications. DESIGN: Consecutive case series. SETTING: Level I trauma center. PATIENTS/PARTICIPANTS: Twenty-five patients with posterior pilon fracture. INTERVENTION: Posterior pilon fracture open reduction and internal fixation. MAIN OUTCOME MEASUREMENTS: Parameters measured included age, sex, type of fracture, surgical technique, anatomical reduction, and complications. RESULTS: Twenty-five patients sustained a posterior pilon fracture, accounting for 13.4% of all operatively treated ankle fractures with median follow-up of 21.7 months. The average age of patients was 42 years (22-62); 19/25 (76%) were female, and 6/25 (24%) were male. A modified posteromedial approach was used in 18/25 (72%) patients. Persistent syndesmotic instability was present in 11/25 (44%) patients after posterior malleolar stabilization. Quality of reduction was assessed under CT scan in 19 patients, with 15/19 (78.9%) having anatomic reduction. We report 2/25 (8%) patients with early wound problems and 7/25 (20%) with short-term complications during follow-up. CONCLUSION: Posterior pilon variant fracture appears to be less common than previously reported. Most fractures can be satisfactorily treated through a modified posteromedial approach. Albeit obtaining posterior malleolar fracture rigid fixation, syndesmotic instability was more prevalent than expected. The short-term complication rate was low. LEVEL OF EVIDENCE: Therapeutic level IV.


Subject(s)
Ankle Fractures , Ankle Injuries , Ankle/diagnostic imaging , Fibula , Fracture Fixation, Internal , Postoperative Complications , Adult , Ankle Fractures/diagnosis , Ankle Fractures/epidemiology , Ankle Fractures/surgery , Ankle Injuries/diagnosis , Ankle Injuries/epidemiology , Ankle Injuries/surgery , Chile/epidemiology , Female , Fibula/diagnostic imaging , Fibula/injuries , Fracture Fixation, Internal/adverse effects , Fracture Fixation, Internal/methods , Humans , Male , Outcome and Process Assessment, Health Care , Postoperative Complications/diagnosis , Postoperative Complications/epidemiology , Tomography, X-Ray Computed/methods
4.
Birth Defects Res ; 111(11): 659-665, 2019 07 01.
Article in English | MEDLINE | ID: mdl-30953423

ABSTRACT

BACKGROUND: Nonsyndromic cleft lip with or without cleft palate (NSCLP) is a common birth defect with multifactorial etiology. Genetic studies have identified numerous gene variants in association with NSCLP. IFT88 (intraflagellar transport 88) has been suggested to play a major role in craniofacial development, as Ift88 mutant mice exhibit cleft palate and mutations in IFT88 were identified in individuals with NSCLP. OBJECTIVE: To investigate the association of IFT88 single nucleotide gene variants (SNVs) with NSCLP in a large family data set consisting of non-Hispanic white (NHW) and Hispanic families. METHODS: Nine SNVs in/nearby IFT88 were genotyped in 482 NHW families and 301 Hispanic NSCLP families. Genotyping was performed using TaqMan® chemistry. Single- and pairwise-SNV association analyses were performed for all families stratified by ethnicity and family history of NSCLP using the family-based association test (FBAT), and association in the presence of linkage (APL). Bonferroni correction was used to adjust for multiple testing and p values ≤.0055 were considered statistically significant. RESULTS: Significant association was found between IFT88 rs9509311 and rs2497490 and NSCLP in NHW all families (p = .004 and .005, respectively), while nominal associations were found for rs7998361 and rs9509307 (p < .05). Pairwise association analyses also showed nominal associations between NSCLP in both NHW and Hispanic data sets (p < .05). No association was found between individual variants in IFT88 and NSCLP in Hispanics. CONCLUSIONS: Our results suggest that variation in IFT88 may contribute to NSCLP risk, particularly in multiplex families from a non-Hispanic white population.


Subject(s)
Cleft Lip/genetics , Cleft Palate/genetics , Tumor Suppressor Proteins/genetics , Ethnicity , Genetic Predisposition to Disease , Genotype , Hispanic or Latino/genetics , Humans , Polymorphism, Single Nucleotide/genetics , Tumor Suppressor Proteins/metabolism , White People/genetics
5.
J Virol ; 93(6)2019 03 15.
Article in English | MEDLINE | ID: mdl-30626673

ABSTRACT

Parvovirus-derived endogenous viral elements (EVEs) have been found in the genomes of many different animal species, resulting from integration events that may have occurred from more than 50 million years ago to much more recently. Here, we further investigate the properties of autonomous parvovirus EVEs and describe their relationships to contemporary viruses. While we did not find any intact capsid protein open reading frames in the integrated viral sequences, we examined three EVEs that were repaired to form full-length sequences with relatively few changes. These sequences were found in the genomes of Rattus norvegicus (brown rat), Mus spretus (Algerian mouse), and Apodemus sylvaticus (wood mouse). The R. norvegicus sequence was not present in the genomes of the closely related species R. rattus, R. tanezumi, R. exulans, and R. everetti, indicating that it was less than 2 million years old, and the M. spretus and A. sylvaticus sequences were not found in the published genomes of other mouse species, also indicating relatively recent insertions. The M. spretus VP2 sequence assembled into capsids, which had high thermal stability, bound the sialic acid N-acetylneuraminic acid, and entered murine L cells. The 3.89-Å structure of the M. spretus virus-like particles (VLPs), determined using cryo-electron microscopy, showed similarities to rodent and porcine parvovirus capsids. The repaired VP2 sequences from R. norvegicus and A. sylvaticus did not assemble as first prepared, but chimeras combining capsid surface loops from R. norvegicus with canine parvovirus assembled, allowing some of that capsid's structures and functions to be examined.IMPORTANCE Parvovirus endogenous viral elements (EVEs) that have been incorporated into the genomes of different animals represent remnants of the DNA sequences of ancient viruses that infected the ancestors of those animals millions of years ago, but we know little about their properties or how they differ from currently circulating parvoviruses. By expressing the capsid proteins of different parvovirus EVEs that were found integrated into the genomes of three different rodents, we can examine their structures and functions. A VP2 (major capsid protein) EVE sequence from a mouse genome assembled into capsids that had a similar structure and biophysical properties to extant parvoviruses and also bound sialic acids and entered rodent cells. Chimeras formed from combinations of canine parvovirus and portions of the parvovirus sequences from the brown rat genome allowed us to examine the structures and functions of the surface loops of that EVE capsid.


Subject(s)
Capsid Proteins/genetics , Genome/genetics , Parvoviridae Infections/genetics , Parvovirus/genetics , Rodentia/genetics , Rodentia/virology , Animals , Capsid , Cats , Cell Line , Dogs , HEK293 Cells , Humans , Mice , Parvoviridae Infections/virology , Rats , Sf9 Cells , Swine
6.
Masaya; s.n; mayo 1991. 69 p. tab, graf.
Monography in Spanish | LILACS | ID: lil-446102

ABSTRACT

Se estudia en el Hospital Hilario Sánchez de Masaya, en el período Noviembre de 1989 a septiembre de 1990, un total de 460 expedientes de pacientes que fueron tratadas con aspiración manual con jeringa de y cánula karman, seleccionándose 299 con diagnóstico de aborto incompleto, de estos 80 pacientes les fue valorado el post-operatorio a los 7 días en consulta externa. Se estudia además, 80 expedientes que fueron sometidos a legrado instrumental, 40 de estas pacientes fueron visitadas en el domicilio para obtener información sobre la evolución post-operatoria; se compara y analiza la eficacia del legrado pos aspiración manual en el tratamiento del aborto incompleto. Se determinó que las pacientes que sufren de aborto incompleto son mujeres en edad reproductiva y no están en los extremos ni son adolescentes, si son viejas. La mayor parte ha tenido mas de 3 hijos y poseen bajo nivel cultural, generalmente son casadas o con unión estable. La principal indicación del legrado por aspiración es el tratamiento de aborto incompleto pero también se usa como diagnóstico y tratamiento del sangrado disfuncional y restos post-parto. No se reportan complicaciones moyaores en el primer año de implementado el procedimiento, dichas complicaciones son principalmente sangrado aumentado y laceraciones de cuello siendo en su mayoria ocasionadas cuando el operador es un médico interno. El seguimiento a los 7 días en consulta externa, demostró que las complicaciones referidas por las pacientes son mínimas, principalmente el dolor pélvico, y se quejan más cuando el procedimiento fue realizado por un médico interno, casi la mitad de las pacientes opinó que el trato del personal de salud, es diferentes según los turnos matutinos y vespertinos, siendo mejor el primero. El uso de métodos anticonceptivos tiene una baja prevalencia entre la población femenina en estudio. El grupo de legrado por aspiración demostró las ventajas anteriomente mencionadas y los resultados del estudio sugieren


Subject(s)
Abortion, Incomplete/diagnosis , Abortion, Incomplete/therapy , Pelvic Pain/complications , Vacuum Curettage
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