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1.
Acta Pharm ; 69(3): 363-380, 2019 Sep 01.
Article in English | MEDLINE | ID: mdl-31259735

ABSTRACT

An ultra-high performance liquid chromatography method for simultaneous determination of tacrolimus impurities in pharmaceutical dosage forms has been developed. Appropriate chromatographic separation was achieved on a BEH C18 column using gradient elution with a total run time of 14 min. The method was applied to analyses of commercial samples and was validated in terms of linearity, precision, accuracy, sensitivity and specificity. It was found to be linear, precise and accurate in the range of 0.05 to 0.6 % of the impurities level in pharmaceutical dosage forms. Stability indicating power of the method was demonstrated by the results of forced degradation studies. The forced degradation study in solution revealed tacrolimus instability under stress alkaline, thermal, light and photolytic conditions and in the presence of a radical initiator or metal ions. The drug was stable at pH 3-5. Solid-state degradation studies conducted on amorphous tacrolimus demonstrated its sensitivity to light, elevated temperature, humidity and oxidation.


Subject(s)
Drug Contamination/prevention & control , Tacrolimus/chemistry , Chromatography, High Pressure Liquid/methods , Drug Stability , Humidity , Limit of Detection , Oxidation-Reduction , Reproducibility of Results , Sensitivity and Specificity
2.
Acta Chim Slov ; 64(4): 968-979, 2017 Dec.
Article in English | MEDLINE | ID: mdl-29318320

ABSTRACT

An ultra-performance liquid chromatographic method for simultaneous determination of rosuvastatin and rosuvastatin degradation products was developed and optimized by using fractional factorial experimental design. Optimized method is capable to accurately determine all potential degradation products of rosuvastatin. During the optimization the effect of four chosen chromatographic factors was evaluated. The analytical method operational design region was modeled using Umetrics MODDE software and optimal chromatographic conditions were predicted. The results of the model show that the most important factors to reach good separation between the peaks of rosuvastatin impurities are the pH of buffer solution and the amount of ACN and THF in the mobile phase. The final optimized method using QbD approach was validated for linearity, accuracy and precision for determination of rosuvastatin and rosuvastatin degradation products in rosuvastatin pharmaceutical dosage forms. Limit of detection and quantification were determined for two known specified impurities. The use of experimental designs enabled us to obtain the maximum amount of information about the analytical method design region. Optimization of the method was done without additional experiments, only weighing the responses and rebuilding the statistical model. This approach is very cost-effective when evaluating a variety of different factors and their interactions.

3.
Acta Chim Slov ; 62(1): 72-82, 2015.
Article in English | MEDLINE | ID: mdl-25830962

ABSTRACT

The effects of seven different chromatographic parameters and five sample preparation parameters in a high performance liquid chromatography (HPLC) method for assay determination of benzalkonium chloride (BKC) in a nasal formulation were evaluated using two fractional factorial experimental designs. The design space of the analytical method was modeled using Umetrics Modde software and the optimal method conditions were predicted. The optimum HPLC chromatographic conditions were obtained using a Luna CN column (150 x 4.6 mm, 3 µm). The results show that mobile phase pH, amount of acetonitrile in the mobile phase and column temperature are the most important factors in obtaining good separation of BKC homologs from an interfering peak. In the sample preparation step, the use of an aqueous solution for dissolving the samples was the most important factor since it eliminated the interfering effect of the active compound. The optimal method was validated for linearity, accuracy and precision. The use of experimental designs enables obtaining the maximum amount of information with the least possible number of experiments. Such designs are an economical manner in evaluating a variety of different factors and their interactions.


Subject(s)
Benzalkonium Compounds/analysis , Chromatography, High Pressure Liquid/methods , Chromatography, High Pressure Liquid/standards , Nasal Sprays , Chemistry, Pharmaceutical , Chromatography, High Pressure Liquid/instrumentation , Equipment Design , Molecular Structure
4.
J Pharm Biomed Anal ; 110: 67-75, 2015 Jun 10.
Article in English | MEDLINE | ID: mdl-25804434

ABSTRACT

Tacrolimus is macrolide drug that is widely used as a potent immunosuppressant. In the present work compatibility testing was conducted on physical mixtures of tacrolimus with excipients and on compatibility mixtures prepared by the simulation of manufacturing process used for the final drug product preparation. Increase in one major degradation product was detected in the presence of magnesium stearate based upon UHPLC analysis. The degradation product was isolated by preparative HPLC and its structure was elucidated by NMR and MS studies. Mechanism of the formation of this degradation product is proposed based on complementary degradation studies in a solution and structural elucidation data. The structure was proven to be alpha-hydroxy acid which is formed from the parent tacrolimus molecule through a benzilic acid type rearrangement reaction in the presence of divalent metallic cations. Degradation is facilitated at higher pH values.


Subject(s)
Drug Contamination , Immunosuppressive Agents/chemistry , Tacrolimus/chemistry , Chemistry, Pharmaceutical , Chromatography, High Pressure Liquid , Drug Stability , Excipients/chemistry , Hydrogen-Ion Concentration , Magnetic Resonance Spectroscopy , Molecular Structure , Spectrometry, Mass, Electrospray Ionization , Stearic Acids/chemistry , Technology, Pharmaceutical/methods
5.
Eur J Med Chem ; 83: 92-101, 2014 Aug 18.
Article in English | MEDLINE | ID: mdl-24952377

ABSTRACT

N-(5-(5-nitro-2-oxo-1,2-dihydro-3H-indol-3-ylidene)4-oxo-2-thioxo-1,3-thiazolidin-3-yl)nicotinamide, a 2-oxoindolinylidene derivative with novel structure scaffold, was evaluated for inhibition potency against the MurD enzyme from Escherichia coli using an enzyme steady-state kinetics study. The compound exerted competitive inhibition with respect to UMA, a MurD substrate, and affected bacterial growth. Furthermore, we isolated and purified (13)C selectively labeled MurD enzyme from E. coli and evaluated the binding interactions of the new compound using the (1)H/(13)C-HSQC 2D NMR method. Molecular dynamics calculations showed stable structure for the MurD-inhibitor complex. The binding mode of novel inhibitor was determined and compared to naphthalene-N-sulfonamide-d-Glu derivatives, transition state mimicking inhibitors, UMA and AMP-PCP, an ATP analog. It binds to the UDP/MurNAc binding region. In contrast to transition state mimicking inhibitors, it does not interact with the enzyme's C-terminal domain, which can be beneficial for ligand binding. A pharmacophore pattern was established for the design of novel drugs having a propensity to inhibit a broad spectrum of Mur enzymes.


Subject(s)
Escherichia coli/enzymology , Molecular Dynamics Simulation , Niacinamide/analogs & derivatives , Niacinamide/metabolism , Niacinamide/pharmacology , Peptide Synthases/antagonists & inhibitors , Peptide Synthases/metabolism , Anti-Bacterial Agents/chemistry , Anti-Bacterial Agents/metabolism , Anti-Bacterial Agents/pharmacology , Enzyme Inhibitors/chemistry , Enzyme Inhibitors/metabolism , Enzyme Inhibitors/pharmacology , Escherichia coli/drug effects , Kinetics , Magnetic Resonance Spectroscopy , Niacinamide/chemistry , Peptide Synthases/chemistry , Protein Binding , Protein Structure, Tertiary
6.
Eur J Pharm Biopharm ; 85(3 Pt B): 1148-56, 2013 Nov.
Article in English | MEDLINE | ID: mdl-24056092

ABSTRACT

The excipient-mediated precipitation inhibition is classically determined by the quantification of the dissolved compound in the solution. In this study, two alternative approaches were evaluated, one is the light scattering (nephelometer) and other is the turbidity (plate reader) microtiter plate-based methods which are based on the quantification of the compound precipitate. Following the optimization of the nephelometer settings (beam focus, laser gain) and the experimental conditions, the screening of 23 excipients on the precipitation inhibition of poorly soluble fenofibrate and dipyridamole was performed. The light scattering method resulted in excellent correlation (r>0.91) between the calculated precipitation inhibitor parameters (PIPs) and the precipitation inhibition index (PI(classical)) obtained by the classical approach for fenofibrate and dipyridamole. Among the evaluated PIPs AUC100 (nephelometer) resulted in only four false positives and lack of false negatives. In the case of the turbidity-based method a good correlation of the PI(classical) was obtained for the PIP maximal optical density (OD(max), r=0.91), however, only for fenofibrate. In the case of the OD(max) (plate reader) five false positives and two false negatives were identified. In conclusion, the light scattering-based method outperformed the turbidity-based one and could be reliably used for identification of novel precipitation inhibitors.


Subject(s)
Excipients , Technology, Pharmaceutical/methods , Administration, Oral , Area Under Curve , Biological Availability , Calibration , Chemical Precipitation , Chemistry, Pharmaceutical/methods , Dipyridamole/chemistry , False Positive Reactions , Fenofibrate/chemistry , Hydrogen-Ion Concentration , Lasers , Light , Nephelometry and Turbidimetry , Reproducibility of Results , Scattering, Radiation , Solubility
7.
Mol Pharm ; 10(6): 2299-310, 2013 Jun 03.
Article in English | MEDLINE | ID: mdl-23586335

ABSTRACT

The aim of this study was to develop a sirolimus (BCS class II drug substance) solid oral dosage form containing a precipitation inhibitor, which would result in an improved sirolimus absorption in humans compared to the formulation containing nanosized sirolimus without a precipitation inhibitor, i.e., Rapamune. The selection of the precipitation inhibitor was based on the results of a screening campaign that identified two "hit" excipients: HPMC 603 (i.e., Pharmacoat 603) and Poloxamer 407. However, in a confirmatory precipitation inhibitor study using biorelevant media (Fa/FeSSIF) HPMC 603 more effectively inhibited sirolimus precipitation than Poloxamer 407. In the PAMPA assay, HPMC 603, but not Poloxamer 407, significantly increased the flux of the sirolimus across the membrane lipid layer. Additionally, a differential scanning calorimetry (DSC) and an infrared (IR) spectroscopy study revealed that interactions between the sirolimus and HPMC 603 were developed that could lead to the observed precipitation inhibition effect. Based on the above data, two formulations with HPMC 603-coated sirolimus particles were developed, namely, formulation A (d (0.5) = 0.21 µm) and formulation B (d (0.5) = 1.7 µm). A human pharmacokinetic study outlined that significantly higher AUC and Cmax were obtained for formulations A and B in comparison to Rapamune. This result could be attributed to the HPMC 603 (Pharmacoat 603) mediated sirolimus precipitation inhibition resulting in improved sirolimus absorption from the gastrointestinal tract in humans.


Subject(s)
Methylcellulose/analogs & derivatives , Sirolimus/chemistry , Sirolimus/pharmacokinetics , Calorimetry, Differential Scanning , Chemistry, Pharmaceutical/methods , Humans , Hypromellose Derivatives , Methylcellulose/chemistry , Spectrophotometry, Infrared
8.
Assay Drug Dev Technol ; 11(2): 117-29, 2013 Mar.
Article in English | MEDLINE | ID: mdl-23116459

ABSTRACT

The objective of the present study was to develop and evaluate a high-throughput (HT) precipitation inhibitor screening method that can be used for the identification of the excipient-mediated precipitation inhibition of poorly soluble drugs. The impact of incubation temperature, shaking intensity, phase separation, inter- and intraday variability, cosolvent, and plate selection on the HT screening method performance was investigated. Additionally, the pipetting quality of the automated workstation, the correlation with the classical laboratory approach, and the practical implementation of the developed HT screening method using two model compounds are disclosed. Investigation of the HT method resulted in optimized experimental conditions, which showed low inter- and intraday variability (relative standard deviation [RSD]<5.88%). Higher shaking intensity (7 Hz) and incubation temperature (37°C) resulted in a lower likelihood of obtaining false-negative results. The acceptable dimethyl sulfoxide concentration in the precipitation inhibitor screening assay was set to ≤1% (v/v). All liquid dispensing steps resulted in an RSD of <3.4%, and an excellent correlation (R(2)=0.96, P<0.01) with the classical laboratory method was obtained. The practical implementation of the developed HT method was demonstrated by investigating the impact of 23 diverse excipients on the precipitation inhibition of two poorly soluble drugs (fenofibrate and carbamazepine). The screen resulted in the identification of hit excipients, which were not identical for fenofibrate and carbamazepine. This outcome emphasized that the HT screening approach is a reasonable starting point for searching for effective precipitation inhibitors, especially because the excipient-mediated precipitation inhibition effect is case specific and cannot be predicted in a straightforward manner.


Subject(s)
Chemical Precipitation , Drug Evaluation, Preclinical/instrumentation , Drug Stability , Excipients/chemistry , Microfluidics/instrumentation , Pharmaceutical Preparations/analysis , Pharmaceutical Preparations/chemistry , Equipment Design , Equipment Failure Analysis , Solubility
9.
Drug Metab Dispos ; 39(1): 39-46, 2011 Jan.
Article in English | MEDLINE | ID: mdl-20952551

ABSTRACT

Novel potential inhibitors of the postsqualene portion of cholesterol synthesis were screened in HepG2 cells. 2-(4-Phenethylpiperazin-1-yl)-1-(pyridine-3-yl)ethanol (LK-980) was identified as a prospective compound and was characterized further in cultures of human primary hepatocytes from seven donors. In vitro kinetic measurements show that the half-life of LK-980 is at least 4.3 h. LK-980 does not induce CYP3A4 mRNA nor enzyme activity. Target prediction was performed by gas chromatography-mass spectrometry, allowing simultaneous separation and quantification of nine late cholesterol intermediates. Experiments indicated that human sterol Δ(7)-reductase (DHCR7) is the major target of LK-980 (34-fold increase of 7-dehydrocholesterol), whereas human sterol Δ(14)-reductase (DHCR14), human sterol Δ(24)-reductase (DHCR24), and human sterol C5-desaturase (SC5DL) represent minor targets. In the absence of purified enzymes, we used the mathematical model of cholesterol synthesis to evaluate whether indeed more than a single enzyme is inhibited. In silico inhibition of only DHCR7 modifies the flux of cholesterol intermediates, resulting in a sterol profile that does not support experimental data. Partial inhibition of the DHCR14, DHCR24, and SC5DL steps, in addition to DHCR7, supports the experimental sterol profile. In conclusion, we provide experimental and computational evidence that LK-980, a novel inhibitor from the late portion of cholesterol synthesis, inhibits primarily DHCR7 and to a lesser extent three other enzymes from this pathway.


Subject(s)
Anticholesteremic Agents/pharmacology , Cholesterol/biosynthesis , Lanosterol/metabolism , Oxidoreductases Acting on CH-CH Group Donors/antagonists & inhibitors , Piperazines/pharmacology , Pyridines/pharmacology , Acyl Coenzyme A/metabolism , Anticholesteremic Agents/blood , Anticholesteremic Agents/chemistry , Anticholesteremic Agents/pharmacokinetics , Cells, Cultured , Cytochrome P-450 CYP3A/biosynthesis , Cytochrome P-450 CYP3A/metabolism , Hep G2 Cells , Hepatocytes/metabolism , Humans , Lipogenesis , Models, Biological , Piperazines/blood , Piperazines/chemistry , Piperazines/pharmacokinetics , Pyridines/blood , Pyridines/chemistry , Pyridines/pharmacokinetics
10.
Drug Dev Ind Pharm ; 37(3): 281-9, 2011 Mar.
Article in English | MEDLINE | ID: mdl-20923390

ABSTRACT

The objective of this work was the development and validation of atomic absorption spectrometric (AAS) methods for the determination of residual active pharmaceutical ingredients (API) in rinse samples for cleaning validation. AAS as an indirect method for the determination of API in rinse samples can be applied when it is in the form of salt with metal ions or when the metal ion is a part of the API's structure. The electrothermal AAS methods (aqueous and ethanol medium) for the determination of magnesium in esomeprazole magnesium and the flame AAS method for the determination of lithium in lithium carbonate in rinse samples were developed. Various combinations of solvents were tested and a combination of 1% aqueous or ethanol solution of nitric acid for esomeprazole magnesium and 0.1% aqueous solution of nitric acid for lithium carbonate were found to be the most suitable. The atomization conditions in the graphite furnace and in the flame were carefully studied to avoid losses of analyte and to achieve suitable sensitivity. The cleaning verification methods were validated with respect to accuracy, precision, linearity, limit of detection, and quantification. In all the cases, the limits of detection were at the microgram level. The methods were successfully applied for the determination of esomeprazole magnesium and lithium carbonate in rinse samples from cleaning procedures.


Subject(s)
Equipment Contamination/prevention & control , Esomeprazole/analysis , Lithium Carbonate/analysis , Pharmaceutical Preparations/analysis , Spectrophotometry, Atomic/methods , Anti-Ulcer Agents/analysis , Anti-Ulcer Agents/chemistry , Antimanic Agents/analysis , Antimanic Agents/chemistry , Esomeprazole/chemistry , Ethanol/chemistry , Linear Models , Lithium/analysis , Lithium Carbonate/chemistry , Magnesium/analysis , Reproducibility of Results , Water/chemistry
11.
Acta Chim Slov ; 58(3): 492-500, 2011 Sep.
Article in English | MEDLINE | ID: mdl-24062109

ABSTRACT

A new crystal form of cabergoline, form L, was discovered and characterized by thermal analyses, X-ray powder diffraction (XRPD), infrared spectroscopy (IR), Raman spectroscopy, dynamic vapor sorption (DVS), and comparative dissolution behavior. The morphology of rod-shaped crystals was investigated by scanning electron microscopy (SEM). Form L was compared to other non-solvated forms of cabergoline such as form I, II, VII and to the amorphous form. The thermodynamic stability of form L is supported by its long-term stability. Form L is a pharmaceutically applicable crystal form.

12.
J Microencapsul ; 27(7): 572-82, 2010.
Article in English | MEDLINE | ID: mdl-20690794

ABSTRACT

LK-423 is a phthalimido-desmuramyl-dipeptide derivative with immunomodulating activity. In the present study the therapeutic efficacy of a colon-specific drug delivery system–LK-423 microcapsules–was examined in the 2,4,6-trinitrobenzene sulphonic acid (TNBS)-induced ulcerative colitis model in rats. The colon-specific delivery of the drug using microcapsules relies on the combination of pH (outer gastroresistant coating), time (inner retard coating of Eudragit® RS and RL) and enzyme (pectin core) controlled drug release mechanisms. The optimal in vitro dissolution profile for LK-423 delivery to the colon of rats was obtained after coating newly developed LK-423 loaded pectin cores with 20% w/w of retard coating with a Eudragit® RS/RL ratio of 8.5/1.5 and 30% w/w of enteric coating. Orally administered LK-423 microcapsules were therapeutically more beneficial in treating TNBS-induced ulcerative colitis in rats than orally or rectally administered LK-423 in the form of suspension. Clinical activity scores and colon weight to length ratio were insignificantly lower and the macroscopically estimated degree of healing was significantly greater. On the histological level, the administration of LK-423 microcapsules resulted in most physiological regeneration of intestinal mucosa, indicated by regular architecture of all mucosal tissue components, what is probably related to local drug delivery near the site of inflammation achieved using microcapsules. These results demonstrate that LK-23 colon delivery microcapsules enhance the therapeutic efficacy of the drug and therefore appear to be a useful approach for treating various inflammatory diseases in the large intestine.


Subject(s)
Capsules/therapeutic use , Colitis/drug therapy , Colon/drug effects , Dipeptides/administration & dosage , Disease Models, Animal , Drug Delivery Systems/methods , Phthalimides/administration & dosage , Administration, Oral , Administration, Rectal , Animals , Capsules/administration & dosage , Capsules/pharmacokinetics , Colitis/chemically induced , Colitis/pathology , Colon/metabolism , Colon/pathology , Dipeptides/chemistry , Dipeptides/pharmacokinetics , Dipeptides/therapeutic use , Hydrogen-Ion Concentration , Intestinal Absorption/drug effects , Intestinal Absorption/physiology , Intestinal Mucosa/drug effects , Intestinal Mucosa/metabolism , Intestinal Mucosa/pathology , Male , Phthalimides/chemistry , Phthalimides/pharmacokinetics , Phthalimides/therapeutic use , Rats , Rats, Wistar , Trinitrobenzenesulfonic Acid/toxicity
13.
BMC Microbiol ; 10: 159, 2010 Jun 01.
Article in English | MEDLINE | ID: mdl-20515462

ABSTRACT

BACKGROUND: Staphylococcus aureus is a highly adaptable human pathogen and there is a constant search for effective antibiotics. Fosfomycin is a potent irreversible inhibitor of MurA, an enolpyruvyl transferase that uses phosphoenolpyruvate as substrate. The goal of this study was to identify the pathways and processes primarily affected by fosfomycin at the genome-wide transcriptome level to aid development of new drugs. RESULTS: S. aureus ATCC 29213 cells were treated with sub-MIC concentrations of fosfomycin and harvested at 10, 20 and 40 minutes after treatment. S. aureus GeneChip statistical data analysis was complemented by gene set enrichment analysis. A visualization tool for mapping gene expression data into biological pathways was developed in order to identify the metabolic processes affected by fosfomycin. We have shown that the number of significantly differentially expressed genes in treated cultures increased with time and with increasing fosfomycin concentration. The target pathway - peptidoglycan biosynthesis - was upregulated following fosfomycin treatment. Modulation of transport processes, cofactor biosynthesis, energy metabolism and nucleic acid biosynthesis was also observed. CONCLUSIONS: Several pathways and genes downregulated by fosfomycin have been identified, in contrast to previously described cell wall active antibiotics, and was explained by starvation response induced by phosphoenolpyruvate accumulation. Transcriptomic profiling, in combination with meta-analysis, has been shown to be a valuable tool in determining bacterial response to a specific antibiotic.


Subject(s)
Anti-Bacterial Agents/pharmacology , Fosfomycin/pharmacology , Gene Expression Profiling , Peptidoglycan/biosynthesis , Phosphoenolpyruvate/metabolism , Staphylococcus aureus/drug effects , Transcription, Genetic/drug effects , Biological Transport/drug effects , Cell Wall/metabolism , Coenzymes/biosynthesis , Dose-Response Relationship, Drug , Energy Metabolism/drug effects , Nucleic Acids/biosynthesis , Oligonucleotide Array Sequence Analysis , Time Factors
14.
Acta Chim Slov ; 57(1): 37-44, 2010 Mar.
Article in English | MEDLINE | ID: mdl-24061653

ABSTRACT

An electrothermal atomic absorption spectrometric procedure for the determination of nickel in active pharmaceutical ingredients was developed. Since the recoveries of nickel by the direct dissolution of samples in diluted nitric acid were low and caused errors in the determination of Ni in pharmaceutical samples, different approaches for sample pre-treatment were examined. It was found that the microwave digestion was the most suitable way for sample preparation. Various combinations of digestion agents and different microwave conditions were tested. The combination of nitric acid and hydrogen peroxide was found to be the most appropriate. The validity of the method was evaluated by recovery studies of spiked samples and by the comparison of the results obtained by inductively coupled plasma mass spectrometry (ICP-MS). The recovery ranged from 87.5 to 104.0% and a good agreement was achieved between both methods. The detection limit and the limit of quantification were 0.6 and 2.1 µg g-1 respectively. The precision of the method was confirmed by the determination of Ni in the spiked samples and was below 4%, expressed in terms of a relative standard deviation. The method was applied to the determination of nickel in production samples of active pharmaceutical ingredients and intermediates.

15.
Drug Dev Ind Pharm ; 35(11): 1293-304, 2009 Nov.
Article in English | MEDLINE | ID: mdl-19832629

ABSTRACT

INTRODUCTION: LK-423 is a new phthalimido-desmuramyl-dipeptide derivative with immunomodulating activity. As optimized delivery to the site of action appears crucial for further preclinical development of LK-423, the aim of this study was to perform a physicochemical and preclinical pharmacokinetic and toxicological evaluation. METHODS: The solubility, partition coefficient, permeability, and stability profile were determined. Pharmacokinetics were evaluated in rats following intravenous and oral application of LK-423, and in dogs after intravenous administration and oral administration of microcapsules, designed for colon-specific delivery of LK-423 based on pH-, time-, and enzyme-controlled release mechanisms. Additionally, the acute and subchronic toxicity was examined. RESULTS AND DISCUSSION: LK-423 is hydrophilic, sparingly to slightly soluble, and poorly permeable. Stability profile in aqueous solution is pH dependent. A pharmacokinetic study following intravenous application to rats and dogs revealed that LK-423 is rapidly eliminated with a short terminal phase half-life, and high plasma clearance, as well as a limited distribution to the peripheral tissue. Oral bioavailability of LK-423 is low, presumably due to low permeability. Debris of insoluble microcapsule coating in feces and obtained plasma concentration profiles confirm that LK-423 microcapsules are a promising approach for local treatment of inflammatory diseases of the large intestine. Acute and a subchronic toxicity results indicate that LK-423 is a safe and nontoxic drug under the applied experimental conditions.


Subject(s)
Dipeptides/chemistry , Dipeptides/pharmacokinetics , Dipeptides/toxicity , Immunologic Factors/chemistry , Immunologic Factors/pharmacokinetics , Immunologic Factors/toxicity , Phthalimides/chemistry , Phthalimides/pharmacokinetics , Phthalimides/toxicity , Administration, Oral , Animals , Capsules , Chromatography, High Pressure Liquid , Delayed-Action Preparations , Dipeptides/administration & dosage , Dipeptides/blood , Dogs , Drug Evaluation, Preclinical/methods , Drug Stability , Hydrogen-Ion Concentration , Immunologic Factors/administration & dosage , Immunologic Factors/blood , Injections, Intraperitoneal , Injections, Intravenous , Intestinal Absorption/drug effects , Intestinal Mucosa/metabolism , Male , Mass Spectrometry , Mice , Mice, Inbred Strains , Molecular Structure , Phthalimides/administration & dosage , Phthalimides/blood , Rats , Rats, Wistar , Solubility , Toxicity Tests, Acute , Toxicity Tests, Chronic
16.
J Biomol Screen ; 14(4): 412-8, 2009 Apr.
Article in English | MEDLINE | ID: mdl-19403924

ABSTRACT

A novel assay for monitoring the activity of the bacterial enzyme UDP-N-acetylmuramyl-L-alanine:D-glutamate ligase (MurD ligase) is presented. MurD, which belongs to an enzyme family of Mur ligases, is essential for the synthesis of bacterial peptidoglycan and therefore represents an attractive target for the discovery of novel antibacterial agents. The inhibition assay described in this article is amenable to high-throughput screening. It is based on the detection of the accumulation of adenosine 5'-diphosphate (ADP), a product of the reaction catalyzed by MurD ligase, by conversion to a fluorescent signal via a coupled enzyme system, using the ADP Quest assay kit from DiscoveRx. The novel assay has been validated by obtaining KM,app values for substrates D-Glu, UDP- N-acetylmuramyl-L-alanine (UMA) and ATP that are in agreement with the data reported in the literature. A counterscreen assay was introduced to eliminate false positives, and some of the known MurD inhibitors have been retested to compare the data measured with different methods. Moreover, a focused library of around 1000 compounds was screened for the inhibition of MurD to assess the performance and robustness of the assay. Finally, a novel MurD inhibitor belonging to a new structural class, with an IC50 value of 105 microM, was discovered.


Subject(s)
Enzyme Inhibitors/analysis , Enzyme Inhibitors/pharmacology , Escherichia coli/enzymology , Fluorometry/methods , Peptide Synthases/antagonists & inhibitors , Adenosine Triphosphate/metabolism , Enzyme Inhibitors/chemistry , Glutamic Acid/metabolism , Inhibitory Concentration 50 , Kinetics , Small Molecule Libraries/analysis , Small Molecule Libraries/pharmacology , Uridine Diphosphate N-Acetylmuramic Acid/analogs & derivatives , Uridine Diphosphate N-Acetylmuramic Acid/metabolism
17.
J Med Chem ; 52(9): 2899-908, 2009 May 14.
Article in English | MEDLINE | ID: mdl-19358612

ABSTRACT

The presented series of naphthalene-N-sulfonyl-D-glutamic acid derivatives are novel MurD ligase inhibitors with moderate affinity that occupy the D-Glu binding site. We performed an NMR study including transfer NOE to determine the ligand bound conformation, as well as saturation transfer difference experiments to obtain ligand epitope maps. The difference in overall appearance of the epitope maps highlights the importance of hydrophobic interactions and shows the segments of molecular structure that are responsible for them. Transfer NOE experiments indicate the conformational flexibility of bound ligands, which were then further examined by unrestrained molecular dynamics calculations. The results revealed the differing degrees of ligand flexibility and their effect on particular ligand-enzyme contacts. Conformational flexibility not evident in the crystal structures may have an effect on ligand-binding site adaptability, and this is probably one of the important reasons for the only moderate activity of novel derivatives.


Subject(s)
Enzyme Inhibitors/chemistry , Enzyme Inhibitors/metabolism , Glutamic Acid/chemistry , Glutamic Acid/metabolism , Models, Molecular , Naphthalenes/chemistry , Peptide Synthases/antagonists & inhibitors , Drug Design , Enzyme Inhibitors/pharmacology , Epitope Mapping , Escherichia coli/enzymology , Glutamic Acid/pharmacology , Ligands , Magnetic Resonance Spectroscopy , Molecular Conformation , Molecular Weight , Peptide Synthases/chemistry , Peptide Synthases/metabolism , Protein Binding
18.
J Biomol Screen ; 14(2): 142-50, 2009 Feb.
Article in English | MEDLINE | ID: mdl-19196697

ABSTRACT

Cytotoxicity screening of new chemical entities in antibacterial drug discovery discerns between cytotoxic and antimicrobial activity, thus providing predictive evidence for selective toxicity. The objective of this study was to evaluate 3 cytotoxicity assays in identifying novel antibacterial hits with desired safety margins. The endpoints in assays comprised adenylate kinase (AK) release rate as an indicator of membrane rupture (Toxilight), intracellular adenosine triphosphate (CellTiter-Glo), and reduction of resazurin (CellTiter-Blue) both as indicators of cell metabolic activity. In the CellTiter-Glo and the CellTiter-Blue assays, 7 of 8 selected compounds showed cytotoxicity, whereas in the Toxilight assay, 3 of 8 compounds significantly reduced cell viability in the ChoK1 and the JurkatE6.1 cell line. The CellTiter-Glo assay proved to be the most sensitive among the evaluated assays, and excellent Z' values were obtained in the 96-well plate (Z' > 0.83). The CellTiter-Glo assay was clearly superior to the CellTiter-Blue and the Toxilight assay for the initial cytotoxicity screening. Moreover, the application of the CellTiter-Glo assay to determine mammalian cell toxicity versus the antibacterial effect ratio contributed to early identification of antibacterial hits with desired safety margins. The chemical structures of these novel antibacterial hits are disclosed herein.


Subject(s)
Anti-Bacterial Agents/isolation & purification , Cytotoxins/analysis , Drug Evaluation, Preclinical/methods , Animals , Anti-Bacterial Agents/chemistry , Anti-Bacterial Agents/pharmacology , CHO Cells , Cell Proliferation/drug effects , Cricetinae , Cricetulus , Cytotoxins/chemistry , Cytotoxins/pharmacology , Humans , Jurkat Cells , Microbial Sensitivity Tests/methods , Microbial Viability/drug effects , Models, Biological , Structure-Activity Relationship
19.
Chem Biol Interact ; 178(1-3): 310-6, 2009 Mar 16.
Article in English | MEDLINE | ID: mdl-18977209

ABSTRACT

Bacterial beta-ketoacyl-[acyl carrier protein] (beta-ketoacyl-ACP) reductase (FabG) is a highly conserved and ubiquitously expressed enzyme of the fatty-acid biosynthetic pathway of prokaryotic organisms that catalyzes NADPH-dependent reduction of beta-ketoacyl-ACP intermediates. Therefore, FabG represents an appealing target for the development of new antimicrobial agents. A number of trans-cinnamic acid derivatives were designed and screened for inhibitory activities against FabG from Escherichia coli. These inhibited FabG enzymatic activity with IC(50) values in the microM range, and were used as templates for the subsequent diversification of the chemotype. Introduction of an electron-withdrawing 4-cyano group to the phenol substituent showed improved inhibition over the non-substituted compound. The benzo-[1,3]-dioxol moiety also appeared to be essential for inhibitory activity of trans-cinnamic acid derivatives against FabG from E. coli. To explain the possible binding position, the best inhibitor from the present study was docked in the active site of FabG. The results for the best scoring conformers chosen by the docking programme revealed that cinnamic acid derivatives can be accommodated in the substrate-binding region of the active site, above the nicotinamide moiety of the NADPH cofactor. Additionally, a phage-displayed library of random linear 15-mer peptides was screened against FabG, to identify ligands with the common PPLTXY motif.


Subject(s)
Alcohol Oxidoreductases/antagonists & inhibitors , Enzyme Inhibitors/pharmacology , Escherichia coli/chemistry , 3-Oxoacyl-(Acyl-Carrier-Protein) Reductase , Alcohol Oxidoreductases/metabolism , Amino Acid Sequence , Base Sequence , Catalytic Domain , Cinnamates/chemistry , DNA Primers , Enzyme Inhibitors/isolation & purification , Enzyme-Linked Immunosorbent Assay , Magnetic Resonance Spectroscopy , Models, Molecular , Molecular Sequence Data , Peptides/chemistry , Peptides/pharmacology , Spectrometry, Mass, Electrospray Ionization
20.
Antimicrob Agents Chemother ; 53(2): 505-11, 2009 Feb.
Article in English | MEDLINE | ID: mdl-19075067

ABSTRACT

LK-157 is a novel tricyclic carbapenem with potent activity against class A and class C beta-lactamases. When tested against the purified TEM-1 and SHV-1 enzymes, LK-157 exhibited 50% inhibitory concentrations (IC(50)s) in the ranges of the clavulanic acid and tazobactam IC(50)s (55 nM and 151 nM, respectively). Moreover, LK-157 significantly inhibited AmpC beta-lactamase (IC(50), 62 nM), as LK-157 was >2,000-fold more potent than clavulanic acid and approximately 28-fold more active than tazobactam. The in vitro activities of LK-157 in combination with amoxicillin, piperacillin, ceftazidime, cefotaxime, ceftriaxone, cefepime, cefpirome, and aztreonam against an array of Ambler class A (TEM-, SHV-, CTX-M-, KPC-, PER-, BRO-, and PC-type)- and class C-producing bacterial strains derived from clinical settings were evaluated in synergism experiments and compared with those of clavulanic acid, tazobactam, and sulbactam. In vitro MICs against ESBL-producing strains (except CTX-M-containing strains) were reduced 2- to >256-fold, and those against AmpC-producing strains were reduced even up to >32-fold. The lowest MICs (< or =0.025 to 1.6 microg/ml) were observed for the combination of cefepime and cefpirome with a constant LK-157 concentration of 4 microg/ml, thus raising an interest for further development. LK-157 proved to be a potent beta-lactamase inhibitor, combining activity against class A and class C beta-lactamases, which is an absolute necessity for use in the clinical setting due to the worldwide increasing prevalence of bacterial strains resistant to beta-lactam antibiotics.


Subject(s)
Anti-Bacterial Agents/pharmacology , Carbapenems/pharmacology , Enzyme Inhibitors/pharmacology , beta-Lactamase Inhibitors , Bacteria/drug effects , Bacterial Proteins/antagonists & inhibitors , Drug Resistance, Bacterial/drug effects , Microbial Sensitivity Tests , beta-Lactamases
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