Raman evaluation of the crystallinity degree and composition of poly(L-lactide-co-ε-caprolactone).

In this work, we study two series of the copolymers of L-lactide (LLA) and ε-caprolactone (CL) with the CL molar content of 5, 15, and 30 %. The first series was the commercial semicrystalline granules (Corbion, Netherlands), which we analyzed without any additional modification. The second series was amorphous films, prepared from the granules by hot pressing with the subsequent fast quenching in order to avoid the crystallization. We used Raman spectroscopy in conjunction with the quantum chemical modeling to evaluate the structure of the copolymers. As additional methods, we applied X-ray diffraction (XRD) analysis and differential scanning calorimetry (DSC). The main result of our study is the elaboration of the Raman methods of quantitative analysis of the relative contents of the comonomers and the crystallinity degree of the poly(L-lactide-co-ε-caprolactone). These methods are based on measurements of the ratios of the peak intensities of the poly(L-lactide) (PLLA) bands at 411 and 874 cm-1, the PLLA band at 2947 cm-1 and the poly(ε-caprolactone) band at 2914 cm-1. Raman study shows that growth of the CL content causes the monotonous decrease in the crystallinity degree of PLLA blocks. Density functional theory analysis of LLA decamer in the conformation of helix 103 allows us to assign the PLLA Raman bands. The Raman data on the composition and crystallinity degree of the copolymers correlate very well with the results of XRD and DSC studies, as well as with the information on the composition of the copolymers provided by manufacturer.

Raman structural study of ethylene glycol and 1,3-propylene glycol aqueous solutions.

Raman spectra of ethylene glycol (EG) and 1,3-propylene glycol (1,3-PG) aqueous solutions with the diol content from 10 to 90 mol% were measured. The diol content weakly influences the EG and 1,3-PG Raman bands in the spectra of the solutions in the region 250-1800 cm-1. This fact means that the conformational compositions of both the diols do not change significantly with dissolving in water. The intensity of the OH stretching band with respect to the diol bands intensities is the linear function of the ratio of the mole contents of water and the diol in the solutions. The spectral region 2800-3800 cm-1 can be used to evaluate the chemical composition of these binary solutions. DFT modeling of the Raman spectra of EG molecule in water shell confirms the prevalence of the gauche-conformation of EG in the aqueous solutions.

Relations between the Raman spectra and molecular structure of selected carotenoids: DFT study of α-carotene, ß-carotene, γ-carotene and lycopene.

Using the density functional theory (DFT), we calculated the structures and Raman spectra of trans-isomers of α-carotene, ß-carotene, γ-carotene and lycopene as well as trans-isomers of modified ß-carotene and lycopene molecules with substituted end or/and side groups. The DFT calculations showed that the position of the CC stretching band depends mainly on the number of conjugated CC bonds and decreases with an increase in the conjugation length. The weak dependence of the position of the CC stretching band on the structure of the carotenoid side and end groups suggests that this band can be used to evaluate the conjugation length for trans-isomers of various molecules containing polyene chains. The CC stretching band shifts towards lower wavenumbers with growth of the conjugation length or masses of the end groups and to higher wavenumbers in the presence of the side CH3 groups. The intensities of the CC and CC stretching bands are enhanced with growth of the conjugation length or masses of the end groups. The presence of the side CH3 groups results in bending of the carotenoid backbone, splitting and dumping of intensities of the CC and CC stretching bands.

DFT study of Raman spectra of polyenes and ß-carotene: Dependence on length of polyene chain and isomer type.

We carried out calculations of non-resonance Raman spectra of ß-carotene and polyenes CH2(CHCH)n-2CHCH2 using the density functional theory (DFT). We revealed that the peak positions and intensities of the CC and CC stretching bands depend on length of the polyene chain and type of the isomer. Our experimental non-resonance Raman spectra of ß-carotene powder match well the DFT-simulated Raman spectrum of ß-carotene in the all-trans form. The peak positions and relative intensities of the CC and CC stretching bands of ß-carotene turned out to be similar in the resonance and non-resonance Raman spectra. An increase in the number of conjugated double bonds (n = 3-30) in a polyene structure results in a monotonous shift of the positions of the most intense CC and CC bands towards lower wavenumbers with an increase in the band intensities. An increase in the isomer number results in the monotonous decrease of the CC stretching band intensity for polyenes with 9, 10, 11, 15 and 24 double bonds. An increase in the isomer number inhomogeneously influences the form, position and intensity of the CC stretching band.

Inhibition of the aminopeptidase from Aeromonas proteolytica by aliphatic alcohols. Characterization of the hydrophobic substrate recognition site.

Seven aliphatic and two aromatic alcohols were tested as reporters of the substrate selectivity of the aminopeptidase from Aeromonas proteolytica (AAP). This series of alcohols was chosen to systematically probe the effect of carbon chain length, steric bulk, and inhibitor shape on the inhibition of AAP. Initially, however, the question of whether AAP is denatured in the presence of aliphatic alcohols was addressed. On the basis of circular dichroism (CD), electronic absorption, and fluorescence spectra, the secondary structure of AAP, with and without added aliphatic alcohols, was unchanged. These data clearly indicate that AAP is not denatured in aliphatic alcohols, even up to concentrations of 20% (v/v). All of the alcohols studied were competitive inhibitors of AAP with K(i) values between 860 and 0.98 mM. The clear trend in the data was that as the carbon chain length increases from one to four, the K(i) values increase. Branching of the carbon chains also increases the K(i) values, but large bulky groups, such as that found in tert-butyl alcohol, do not inhibit AAP as well as leucine analogues, such as 3-methyl-1-butanol. The competitive nature of the inhibition indicates that the substrate and each alcohol studied are mutually exclusive due to binding at the same site on the enzyme. On the basis of EPR and electronic absorption data for Co(II)-substituted AAP, none of the alcohols studied binds to the dinuclear metallo-active site of AAP. Thus, reaction of the inhibitory alcohols with the catalytic metal ions cannot constitute the mechanism of inhibition. Combination of these data suggests that each of these inhibitors bind only to the hydrophobic pocket of AAP and, consequently, block the binding of substrate. Thus, the first step in peptide hydrolysis is the recognition of the N-terminal amino acid side chain by the hydrophobic pocket adjacent to the dinuclear active site of AAP.