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1.
Cancer Epidemiol ; 62: 101579, 2019 10.
Article in English | MEDLINE | ID: mdl-31450179

ABSTRACT

BACKGROUND: Preclinical studies suggest that ß-blockers could exhibit anticancer properties in ovarian cancer. Similar effects have also been reported in observational studies, but their results remain inconsistent and could be impaired by methodological limitations. This study aimed to investigate whether ß-blocker use is associated with improved survival in ovarian cancer patients at the Belgian population level. METHODS: We conducted a population-based study by linking data of the Belgian Cancer Registry with medical claims data of the health insurance companies for patients diagnosed with ovarian cancer between 2004 and 2014. Information on ovarian-cancer-specific deaths was retrieved from mortality records collected by regional governments. Use of ß-blockers was modelled as a time-varying covariate in Cox regression models to calculate adjusted hazards ratios (HRs) and 95% confidence intervals (95%CIs) for the association between postdiagnostic ß-blocker exposure and overall or cancer-specific survival (OS and CSS, respectively). Adjustments were made for age at diagnosis, year of diagnosis, comorbidities, cancer stage, and cancer treatments. RESULTS: In our population of 6197 patients, 2373 patients (38%) had at least one prescription of ß-blockers in the 5 years following diagnosis. Postdiagnostic exposure to ß-blockers was associated with a significant decrease in OS (adjusted HR, 1.21; 95%CI 1.12;1.30; p < 0.001) and CSS (adjusted HR, 1.17; 95%CI 1.07;1.29; p < 0.001). Moreover, this association remained similar in dose-response analyses, in subgroup analyses (including by ß-blocker selectivity types), and in sensitivity analyses. CONCLUSION: In this large nationwide cohort of ovarian cancer patients, ß-blocker users had reduced survival.


Subject(s)
Adrenergic beta-Antagonists/therapeutic use , Ovarian Neoplasms/drug therapy , Adrenergic beta-Antagonists/pharmacology , Aged , Cohort Studies , Female , Humans , Male , Middle Aged , Ovarian Neoplasms/mortality , Survival Analysis
2.
Cancer Causes Control ; 30(4): 385-393, 2019 Apr.
Article in English | MEDLINE | ID: mdl-30820714

ABSTRACT

PURPOSE: Preclinical studies have shown that statins reduce proliferation in esophageal cancer. Three recent observational studies have shown encouraging results but suffered from limitations. This work aimed to assess at the Belgian population level whether statin usage was associated with a decreased mortality in esophageal cancer patients. METHODS: We conducted an observational, population-based study by linking data of the Belgian Cancer Registry (BCR) with medical claims data coming from health insurance companies and mortality records collected by regional governments for patients diagnosed with esophageal cancer between 2004 and 2014. Using time-dependent Cox regression models, hazard ratios (HRs) and 95% confidence intervals (CI) for overall and cancer-specific mortality were calculated. RESULTS: Of 6,238 patients with stage I-III esophageal cancer, post-diagnostic use of statins was found in 1,628 (26%) patients. Statins use after diagnosis was associated with a reduction in overall mortality (adjusted HR = 0.84, 95% CI [0.77; 0.92]) and cancer-specific mortality (adjusted HR = 0.87, 95% CI [0.78; 0.97]). Similar association were also seen for pre-diagnostic statin use in overall (adjusted HR = 0.83, 95% CI [0.76-0.91]) and cancer-specific analysis (adjusted HR = 0.86, 95% CI [0.77-0.96]). CONCLUSIONS: In this large cohort of Belgian patients with esophageal cancer, statins use after diagnosis was associated with a decreased mortality.


Subject(s)
Esophageal Neoplasms/mortality , Hydroxymethylglutaryl-CoA Reductase Inhibitors/therapeutic use , Aged , Aged, 80 and over , Belgium , Cohort Studies , Female , Humans , Male , Middle Aged , Proportional Hazards Models , Registries , Survival
3.
Bone Marrow Transplant ; 54(9): 1434-1442, 2019 09.
Article in English | MEDLINE | ID: mdl-30696999

ABSTRACT

While performance since the introduction of the JACIE quality management system has been shown to be improved for allogeneic hematopoietic stem cell transplants (HSCT), impact on autologous-HSCT remains unclear in Europe. Our study on 2697 autologous-HSCT performed in adults in 17 Belgian centres (2007-2013) aims at comparing the adjusted 1 and 3-yr survival between the different centres & investigating the impact of 3 centre-related factors on performance (time between JACIE accreditation achievement by the centre and the considered transplant, centre activity volume and type of HSCT performed by centres: exclusively autologous vs both autologous & allogeneic). We showed a relatively homogeneous performance between Belgian centres before national completeness of JACIE implementation. The 3 centre-related factors had a significant impact on the 1-yr survival, while activity volume and type of HSCT impacted the 3-yr survival of autologous-HSCT patients in univariable analyses. Only activity volume (impact on 1-yr survival only) and type of HSCT (impact on 1 and 3-yr survivals) remained significant in multivariable analysis. This is explained by the strong relationship between these 3 variables. An extended transplantation experience, i.e., performing both auto & allo-HSCT, appears to be a newly informative quality indicator potentially conveying a multitude of underlying complex factors.


Subject(s)
Databases, Factual , Hematologic Neoplasms , Hematopoietic Stem Cell Transplantation , Quality Assurance, Health Care , Adult , Belgium , Disease-Free Survival , Female , Hematologic Neoplasms/mortality , Hematologic Neoplasms/therapy , Humans , Male , Middle Aged , Survival Rate , Transplantation, Autologous , Transplantation, Homologous
4.
Cancer Epidemiol ; 53: 149-155, 2018 04.
Article in English | MEDLINE | ID: mdl-29453032

ABSTRACT

BACKGROUND: Preclinical studies have shown anticancer activities of metformin in gastric cancer and a recent epidemiological study showed a decrease in recurrence and mortality of gastric cancer in metformin users. This study aimed to assess the impact of metformin on gastric cancer survival in diabetic patients at a Belgian population level. METHODS: We conducted an observational, population-based study by linking data of the Belgian Cancer Registry with medical claims data coming from the health insurance companies for patients diagnosed with stage I to III gastric adenocarcinoma between 2006 and 2012. Information on gastric cancer-specific deaths was retrieved from mortality records collected by regional governments. Time-dependent Cox regression models were used to calculate hazard ratios (HRs) and 95% confidence intervals (CI) for overall survival (OS) and cancer-specific mortality (CSS). RESULTS: In our population of 371 patients, a reduction in all-cause mortality was observed in metformin users (adjusted HR = 0.73, 95% CI: [0.52; 1.01], p = 0.06) but not for cancer specific mortality (adjusted HR = 0.86, 95% CI: [0.56; 1.33], p = 0.50). Pre-diagnosis exposure to metformin was associated with a significant improvement in OS (adjusted HR = 0.75, 95% CI: [0.57; 0.98], p = 0.04) that was not significant for CSS (adjusted HR = 0.89, 95% CI: [0.62; 1.28], p = 0.52). Moreover, no dose-response relationship between metformin use and either all-cause or cancer-specific mortality was observed. CONCLUSION: In the first population based study of metformin use in gastric cancer adenocarcinoma patients with previous diabetes, our findings suggest that metformin use might improve overall mortality. However, no such association was found for cancer-specific survival. Additional studies in other populations are required.


Subject(s)
Adenocarcinoma/mortality , Diabetes Mellitus/drug therapy , Hypoglycemic Agents/administration & dosage , Metformin/administration & dosage , Registries/statistics & numerical data , Stomach Neoplasms/mortality , Adenocarcinoma/drug therapy , Adenocarcinoma/epidemiology , Aged , Belgium/epidemiology , Cohort Studies , Diabetes Mellitus/physiopathology , Female , Humans , Incidence , Male , Prognosis , Stomach Neoplasms/drug therapy , Stomach Neoplasms/epidemiology , Survival Rate
5.
Int J Cancer ; 142(7): 1480-1489, 2018 04 01.
Article in English | MEDLINE | ID: mdl-29159866

ABSTRACT

The advantage of adjuvant chemotherapy (ACT) for treating Stage III colon cancer patients is well established and widely accepted. However, many patients with Stage III colon cancer do not receive ACT. Moreover, there are controversies around the effectiveness of ACT for Stage II patients. We investigated the administration of ACT and its association with overall survival in resected Stage II (overall and stratified by low-/high-risk) and Stage III colon cancer patients in three European countries including The Netherlands (2009-2014), Belgium (2009-2013) and Sweden (2009-2014). Hazard ratios (HR) for death were obtained by Cox regression models adjusted for potential confounders. A total of 60244 resected colon cancer patients with pathological Stages II and III were analyzed. A small proportion (range 9-24%) of Stage II and over half (range 55-68%) of Stage III patients received ACT. Administration of ACT in Stages II and III tumors decreased with higher age of patients. Administration of ACT was significantly associated with higher overall survival in high-risk Stage II patients (in The Netherlands (HR; 95%CI = 0.82 (0.67-0.99), Belgium (0.73; 0.59-0.90) and Sweden (0.58; 0.44-0.75)), and in Stage III patients (in The Netherlands (0.47; 0.43-0.50), Belgium (0.46; 0.41-0.50) and Sweden (0.48; 0.43-0.54)). In Stage III, results were consistent across subgroups including elderly patients. Our results show an association of ACT with higher survival among Stage III and high-risk Stage II colon cancer patients. Further investigations are needed on the selection criteria of Stages II and III colon cancer patients for ACT.


Subject(s)
Antineoplastic Combined Chemotherapy Protocols/administration & dosage , Chemotherapy, Adjuvant/methods , Colonic Neoplasms/drug therapy , Colonic Neoplasms/pathology , Adult , Aged , Aged, 80 and over , Belgium , Chemotherapy, Adjuvant/statistics & numerical data , Colonic Neoplasms/mortality , Female , Humans , Male , Middle Aged , Neoplasm Staging , Netherlands , Proportional Hazards Models , Registries , Retrospective Studies , Sweden , Treatment Outcome , White People
6.
PLoS One ; 12(12): e0189233, 2017.
Article in English | MEDLINE | ID: mdl-29261726

ABSTRACT

BACKGROUND: Preclinical in vitro and in vivo studies suggest that statins could exhibit anticancer properties in ovarian cancer. Similar effects have also been reported in observational studies but their results remain inconsistent and could be impaired by methodological limitations. This study aimed to investigate whether statin use is associated with improved survival in ovarian cancer patients at the Belgian population-level. METHODS: All patients with invasive epithelial ovarian cancer diagnosed between 2004 and 2012 were identified from the Belgian Cancer Registry. Vital statuses were obtained from the Crossroads Bank for Social Security and ovarian cancer-specific deaths were identified from death certificates provided by regional administrations. Information on cancer treatments and statin use were retrieved from health insurance databases. Statin use was modelled as a time-varying covariate in Cox regression models to calculate adjusted hazards ratios (HR) and 95% confidence intervals (95%CI) for the association between postdiagnostic exposure to statins and overall- or ovarian cancer-specific mortality within three years after diagnosis. Adjustments were made for age at diagnosis, year of diagnosis, comorbidities, cancer stage, and cancer treatments. RESULTS: A total of 5,416 patients with epithelial ovarian cancer met the inclusion criteria. Of these 1,255 (23%) had at least one statin prescription within three years after diagnosis. Postdiagnostic use of statins was associated with a reduced risk of overall mortality (adjusted HR = 0.81, 95%CI:0.72-0.90, p<0.001). In analyses by statin type, this association was only significant for simvastatin (adjusted HR = 0.86, 95%CI:0.74-0.99, p = 0.05) or rosuvastatin (adjusted HR = 0.71, 95%CI:0.55-0.92, p = 0.01). In subgroup analyses by statin prediagnostic use, the protective association for postdiagnostic statin use was only observed in patients who were also using statins before diagnosis (adjusted HR = 0.73, 95%CI:0.64-0.83, p<0.001). Similar results were observed for ovarian cancer-specific mortality. CONCLUSION: In this large nation-wide cohort of ovarian cancer patients postdiagnostic use of statins was associated with improved survival.


Subject(s)
Hydroxymethylglutaryl-CoA Reductase Inhibitors/therapeutic use , Ovarian Neoplasms/mortality , Aged , Female , Humans , Middle Aged , Retrospective Studies , Survival Analysis
7.
Eur J Cancer Prev ; 26 Joining forces for better cancer registration in Europe: S157-S163, 2017 09.
Article in English | MEDLINE | ID: mdl-28617683

ABSTRACT

The potential years of life lost (PYLL) observed in a cohort of cancer patients cannot be fully assigned to the cancer as both cancer-related and non-cancer-related deaths contribute. A method is presented to decompose the observed all-cause PYLL into cancer mortality and population background mortality fractions when cause of death information is not available. Furthermore, the association of cancer-specific PYLL with cancer-specific mortality and mean age at diagnosis is explored and the impact of the follow-up window length is examined. The framework of the actuarial relative survival and the Ederer II method is applied to estimate the population background mortality contribution, PYLL*. The fraction (PYLL-PYLL*)/PYLL is then attributed to the cancer. The method is applied to cancer incidence in Belgium 2004-2014, about 631 300 cancer patients. The cancer-specific PYLL divided by the number of cancer patients, mean PYLL, in the Belgian cancer population ranges from 0.4 years for prostate cancer to 15 years for tumours of the central nervous system. The cancer-specific mean PYLL increases with both increasing cancer-specific mortality and decreasing age at diagnosis. Longer follow-up periods yield larger cancer-specific mean PYLL until statistical cure of cancer is achieved. The mean PYLL results, obtained by dividing the PYLL by the number of cancer patients, are visualized in combination with cancer incidence and mean age and mean life expectancy at diagnosis, providing an elegant summary to rank and compare cancer sites in terms of incidence, relative survival and PYLL.


Subject(s)
Life Expectancy/trends , Neoplasms/epidemiology , Population Surveillance , Registries/statistics & numerical data , Adult , Aged , Aged, 80 and over , Belgium/epidemiology , Cohort Studies , Female , Follow-Up Studies , Humans , Male , Middle Aged , Neoplasms/diagnosis , Population Surveillance/methods
8.
Eur J Cancer Prev ; 26(5): 396-403, 2017 09.
Article in English | MEDLINE | ID: mdl-27749382

ABSTRACT

A small number of studies have investigated breast cancer (BC) risk among women with a history of false-positive recall (FPR) in BC screening, but none of them has used time-to-event analysis while at the same time quantifying the effect of false-negative diagnostic assessment (FNDA). FNDA occurs when screening detects BC, but this BC is missed on diagnostic assessment (DA). As a result of FNDA, screenings that detected cancer are incorrectly classified as FPR. Our study linked data recorded in the Flemish BC screening program (women aged 50-69 years) to data from the national cancer registry. We used Cox proportional hazards models on a retrospective cohort of 298 738 women to assess the association between FPR and subsequent BC, while adjusting for potential confounders. The mean follow-up was 6.9 years. Compared with women without recall, women with a history of FPR were at an increased risk of developing BC [hazard ratio=2.10 (95% confidence interval: 1.92-2.31)]. However, 22% of BC after FPR was due to FNDA. The hazard ratio dropped to 1.69 (95% confidence interval: 1.52-1.87) when FNDA was excluded. Women with FPR have a subsequently increased BC risk compared with women without recall. The risk is higher for women who have a FPR BI-RADS 4 or 5 compared with FPR BI-RADS 3. There is room for improvement of diagnostic assessment: 41% of the excess risk is explained by FNDA after baseline screening.


Subject(s)
Breast Neoplasms/diagnosis , Breast Neoplasms/epidemiology , Early Detection of Cancer/adverse effects , False Negative Reactions , False Positive Reactions , Registries/statistics & numerical data , Aged , Belgium/epidemiology , Breast/diagnostic imaging , Early Detection of Cancer/methods , Female , Follow-Up Studies , Humans , Mammography/adverse effects , Mass Screening/adverse effects , Mass Screening/methods , Middle Aged , Proportional Hazards Models , Retrospective Studies , Time Factors
9.
Int J Cancer ; 140(5): 1102-1110, 2017 Mar 01.
Article in English | MEDLINE | ID: mdl-27870056

ABSTRACT

Cumulative relative survival curves for many cancers reach a plateau several years after diagnosis, indicating that the cancer survivor group has reached "statistical" cure. Parametric mixture cure model analysis on grouped relative survival curves provide an interesting way to determine the proportion of statistically cured cases and the mean survival time of the fatal cases in particular for population-based cancer registries. Based on the relative survival data from the Belgian Cancer Registry, parametric cure models were applied to seven cancer sites (cervix, colon, corpus uteri, skin melanoma, pancreas, stomach and oesophagus), at the Flemish Regional level for the incidence period 1999-2011. Statistical cure was observed for the examined cancer sites except for oesophageal cancer. The estimated cured proportion ranged from 5.9% [5.7, 6.1] for pancreatic cancer to 80.8% [80.5, 81.2] for skin melanoma. Cure results were further stratified by gender or age group. Stratified cured proportions were higher for females compared to males in colon cancer, stomach cancer, pancreas cancer and skin melanoma, which can mainly be attributed to differences in stage and age distribution between both sexes. This study demonstrates the applicability of cure rate models for the selected cancer sites after 14 years of follow-up and presents the first population-based results on the cure of cancer in Belgium.


Subject(s)
Neoplasms/therapy , Adolescent , Adult , Aged , Aged, 80 and over , Belgium/epidemiology , Digestive System Neoplasms/mortality , Digestive System Neoplasms/therapy , Disease-Free Survival , Female , Follow-Up Studies , Genital Neoplasms, Female/mortality , Genital Neoplasms, Female/therapy , Humans , Kaplan-Meier Estimate , Male , Melanoma/mortality , Melanoma/therapy , Middle Aged , Models, Biological , Neoplasms/mortality , Organ Specificity , Remission Induction , Skin Neoplasms/mortality , Skin Neoplasms/therapy , Survival Rate , Young Adult
10.
Breast Cancer Res ; 18(1): 119, 2016 12 01.
Article in English | MEDLINE | ID: mdl-27906047

ABSTRACT

BACKGROUND: Preclinical studies have demonstrated that propranolol inhibits several pathways involved in breast cancer progression and metastasis. We investigated whether breast cancer patients who used propranolol, or other non-selective beta-blockers, had reduced breast cancer-specific or all-cause mortality in eight European cohorts. METHODS: Incident breast cancer patients were identified from eight cancer registries and compiled through the European Cancer Pharmacoepidemiology Network. Propranolol and non-selective beta-blocker use was ascertained for each patient. Breast cancer-specific and all-cause mortality were available for five and eight cohorts, respectively. Cox regression models were used to calculate hazard ratios (HR) and 95% confidence intervals (CIs) for cancer-specific and all-cause mortality by propranolol and non-selective beta-blocker use. HRs were pooled across cohorts using meta-analysis techniques. Dose-response analyses by number of prescriptions were also performed. Analyses were repeated investigating propranolol use before cancer diagnosis. RESULTS: The combined study population included 55,252 and 133,251 breast cancer patients in the analysis of breast cancer-specific and all-cause mortality respectively. Overall, there was no association between propranolol use after diagnosis of breast cancer and breast cancer-specific or all-cause mortality (fully adjusted HR = 0.94, 95% CI, 0.77, 1.16 and HR = 1.09, 95% CI, 0.93, 1.28, respectively). There was little evidence of a dose-response relationship. There was also no association between propranolol use before breast cancer diagnosis and breast cancer-specific or all-cause mortality (fully adjusted HR = 1.03, 95% CI, 0.86, 1.22 and HR = 1.02, 95% CI, 0.94, 1.10, respectively). Similar null associations were observed for non-selective beta-blockers. CONCLUSIONS: In this large pooled analysis of breast cancer patients, use of propranolol or non-selective beta-blockers was not associated with improved survival.


Subject(s)
Adrenergic beta-Antagonists/therapeutic use , Angiogenesis Inhibitors/therapeutic use , Breast Neoplasms/drug therapy , Propranolol/therapeutic use , Breast Neoplasms/mortality , Cohort Studies , Europe , Female , Humans , Proportional Hazards Models , Treatment Outcome
12.
J Neurosci ; 34(15): 5121-33, 2014 Apr 09.
Article in English | MEDLINE | ID: mdl-24719092

ABSTRACT

The mouse vomeronasal organ (VNO) has a pivotal role in chemical communication. The vomeronasal sensory neuroepithelium consists of distinct populations of vomeronasal sensory neurons (VSNs). A subset of VSNs, with cell bodies in the basal part of the basal layer, coexpress Vmn2r G-protein-coupled receptor genes with H2-Mv genes, a family of nine nonclassical class I major histocompatibility complex genes. The in vivo, physiological roles of the H2-Mv gene family remain mysterious more than a decade after the discovery of combinatorial H2-Mv gene expression in VSNs. Here, we have taken a genetic approach and have deleted the 530 kb cluster of H2-Mv genes in the mouse germline by chromosome engineering. Homozygous mutant mice (ΔH2Mv mice) are viable and fertile. There are no major anatomical defects in their VNO and accessory olfactory bulb (AOB). Their VSNs can be stimulated with chemostimuli (peptides and proteins) to the same maximum responses as VSNs of wild-type mice, but require much higher concentrations. This physiological phenotype is displayed at the single-cell level and is cell autonomous: single V2rf2-expressing VSNs, which normally coexpress H2-Mv genes, display a decreased sensitivity to a peptide ligand in ΔH2Mv mice, whereas single V2r1b-expressing VSNs, which do not coexpress H2-Mv genes, show normal sensitivity to a peptide ligand in ΔH2Mv mice. Consistent with the greatly decreased VSN sensitivity, ΔH2Mv mice display pronounced deficits in aggressive and sexual behaviors. Thus, H2-Mv genes are not absolutely essential for the generation of physiological responses, but are required for ultrasensitive chemodetection by a subset of VSNs.


Subject(s)
Chemoreceptor Cells/metabolism , Genes, MHC Class I/genetics , Smell/genetics , Vomeronasal Organ/metabolism , Animals , Calcium/metabolism , Cell Line , Chemoreceptor Cells/physiology , Female , Gene Deletion , Germ-Line Mutation , Homozygote , Male , Mice , Mice, Inbred C57BL , Phenotype , Receptors, G-Protein-Coupled/genetics , Receptors, G-Protein-Coupled/metabolism , Sensory Thresholds , Sexual Behavior, Animal , Vomeronasal Organ/cytology , Vomeronasal Organ/physiology
13.
BMC Bioinformatics ; 15: 39, 2014 Feb 04.
Article in English | MEDLINE | ID: mdl-24495268

ABSTRACT

BACKGROUND: A challenge in gene expression studies is the reliable identification of differentially expressed genes. In many high-throughput studies, genes are accepted as differentially expressed only if they satisfy simultaneously a p value criterion and a fold change criterion. A statistical method, TREAT, has been developed for microarray data to assess formally if fold changes are significantly higher than a predefined threshold. We have recently applied the NanoString digital platform to study expression of mouse odorant receptor genes, which form with 1,200 members the largest gene family in the mouse genome. Our objectives are, on these data, to decrease false discoveries when formally assessing the genes relative to a fold change threshold, and to provide a guided selection in the choice of this threshold. RESULTS: Statistical tests have been developed for microarray data to identify genes that are differentially expressed relative to a fold change threshold. Here we report that another approach, which we refer to as tTREAT, is more appropriate for our NanoString data, where false discoveries lead to costly and time-consuming follow-up experiments. Methods that we refer to as tTREAT2 and the running fold change model improve the performance of the statistical tests by protecting or selecting the fold change threshold more objectively. We show the benefits on simulated and real data. CONCLUSIONS: Gene-wise statistical analyses of gene expression data, for which the significance relative to a fold change threshold is important, give reproducible and reliable results on NanoString data of mouse odorant receptor genes. Because it can be difficult to set in advance a fold change threshold that is meaningful for the available data, we developed methods that enable a better choice (thus reducing false discoveries and/or missed genes) or avoid this choice altogether. This set of tools may be useful for the analysis of other types of gene expression data.


Subject(s)
Computational Biology/methods , Gene Expression Profiling/methods , Oligonucleotide Array Sequence Analysis/methods , Receptors, Odorant/genetics , Animals , Mice , Models, Statistical , Receptors, Odorant/analysis , Receptors, Odorant/metabolism
14.
Mol Cell Neurosci ; 57: 120-9, 2013 Nov.
Article in English | MEDLINE | ID: mdl-23962816

ABSTRACT

In the mouse, the sense of smell relies predominantly on the expression of ~1200 odorant receptor (OR) genes in the main olfactory epithelium (MOE). Each mature olfactory sensory neuron (OSN) in the MOE is thought to express just one of these OR genes; conversely, an OR gene is expressed in thousands to tens of thousands of OSNs per mouse. Here, we have characterized temporal patterns of OR gene expression in a cohort of inbred C57BL6/N mice from the Aged Rodent Colonies of the National Institute on Aging. We applied the NanoString multiplex platform to quantify RNA abundance for 531 OR genes in whole olfactory mucosa (WOM) tissue samples. The five study groups were females aged 2, 6, 12, 18, and 31 months (mo). We classified the 531 temporal patterns using a step-down quadratic regression method for time course analysis. The majority of OR genes (58.4%) are classified as flat: there is no significant difference from a horizontal line within this time window. There are 32.8% of OR genes with a downward profile, 7.2% with an upward profile, and 1.7% with a convex or concave profile. But the magnitude of these decreases and increases tends to be small: only 4.3% of OR genes are differentially expressed (DE) at 31 mo compared to 2 mo. Interestingly, the variances of NanoString counts for individual OR genes are homogeneous among the age groups. Our analyses of these 15,930 OR gene expression data of C57BL6/N mice that were raised and housed under well-controlled conditions indicate that OR gene expression at the MOE level is intrinsically stable.


Subject(s)
Gene Expression Regulation, Developmental , Olfactory Receptor Neurons/metabolism , Receptors, Odorant/metabolism , Animals , Mice , Mice, Inbred C57BL , Olfactory Receptor Neurons/growth & development , Receptors, Odorant/genetics , Transcription, Genetic
15.
Cell ; 147(4): 907-21, 2011 Nov 11.
Article in English | MEDLINE | ID: mdl-22078886

ABSTRACT

Each olfactory sensory neuron (OSN) in mouse chooses one of 1,200 odorant receptor (OR) genes for expression. OR genes are chosen for expression by greatly varying numbers of OSNs. The mechanisms that regulate the probability of OR gene choice remain unclear. Here, we have applied the NanoString platform of fluorescent barcodes and digital readout to measure RNA levels of 577 OR genes in a single reaction, with probes designed against coding sequences. In an inbred mouse strain with a targeted deletion in the P element, we find that this element regulates OR gene choice differentially across its cluster of 24 OR genes. Importantly, the fold changes of NanoString counts in ΔP or ΔH mice are in very close agreement with the fold changes of cell counts, determined by in situ hybridization. Thus, the P and H elements regulate the probability of OR gene choice, not OR transcript level per OSN.


Subject(s)
Gene Expression Profiling/methods , Receptors, Odorant/genetics , Regulatory Sequences, Nucleic Acid , Animals , Enhancer Elements, Genetic , Gene Expression Regulation , In Situ Hybridization/methods , Mice , Mice, Inbred C57BL , Mutagenesis, Site-Directed , Olfactory Mucosa/metabolism , Olfactory Receptor Neurons/metabolism , Receptors, Odorant/metabolism
16.
Int J Gynecol Cancer ; 21(1): 35-43, 2011 Jan.
Article in English | MEDLINE | ID: mdl-21330829

ABSTRACT

PURPOSE: Accurate preoperative clinical assessment of adnexal masses can optimize outcomes by ensuring appropriate and timely surgery. This article addresses whether a new technology, ovarian HistoScanning, has an additional diagnostic value in mathematical models developed for the differential diagnosis of adnexal masses. PATIENTS AND METHODS: Transvaginal sonography-based morphological variables were obtained through blinded analysis of archived images in 199 women enrolled in a prospective study to assess the performance of ovarian HistoScanning. Logistic regression (LR) and neural network (NN) models including these variables and clinical and patient data along with the HistoScanning score (HSS) (range, 0-125; based on mathematical algorithms) were developed in a learning set (60% patients). The remaining 40% patients (evaluation set) were used to assess model performance. RESULTS: Of all morphological and clinical variables tested, serum CA-125, presence of a solid component, and HSS were most significant and used to develop the LR model. The NN model included all variables. The novel variable, HSS, offered significant improvement in the LR and NN models' performance. The LR and NN models in an independent evaluation set were found to have area under the receiver operating characteristic curve = 0.97 (95% confidence interval [CI], 94-99) and 0.93 (95% CI, 88-98), sensitivities = 83% (95% CI, 71%-91%) and 80% (95% CI, 67%-89%), and specificities = 98% (95% CI, 89%-99%) and 86% (95% CI, 72%-95%), respectively. In addition, these models showed an improved performance when compared with 3 other existing models (all P < 0.05). CONCLUSIONS: This initial report shows a clear benefit of including ovarian HistoScanning into mathematical models used for discriminating benign from malignant ovarian masses. These models may be specifically helpful to the less experienced examiner. Future research should assess performance of these models in prospective clinical trials in different populations.


Subject(s)
Image Interpretation, Computer-Assisted/methods , Neural Networks, Computer , Ovarian Neoplasms/diagnostic imaging , Ovarian Neoplasms/pathology , Aged , CA-125 Antigen/blood , Female , Humans , Logistic Models , Middle Aged , Multivariate Analysis , Predictive Value of Tests , Prospective Studies , ROC Curve , Single-Blind Method , Ultrasonography
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