Photobiological control of crop production and plant diseases.

Plants, as well as fungi, use ambient sunlight as information to regulate photomorphogenetic processes. The photobiological control of this information showed that the development of photobiological greenhouse plastic covers simulates a photonic information that leads to a physiological enhancement of plant productivity and fungal disease control, thus minimizing the need for the use of agrochemicals. The main characteristics of these photobiological greenhouse plastic covers are the high transmission of photosynthetically active radiation (PAR, 400-700 nm) combined with an increase of the factor zeta = RL(655-665 nm)/FRL(725-735 nm), which affects the cellular phytochromic equilibrium phi = Pfr/(Pfr + Pr) and regulates the photosynthetic activity and therefore the plant productivity. Additionally, increase of the spectral ratios from the transmitted light: BL(420-500 nm)/nearUV(290-370 nm) and BL(420-500 nm)/ FRL(725-735 nm), cause mainly the induction of biochemical, physiological and morphological responses, regulated by cryptochromes in plants (e.g. inflorescence and infructescence) and mycochrome in fungi (e.g. inhibition of sporulation). In the present work, comparative studies with randomly selected greenhouse plastics showed that small changes in the above-mentioned "photobiological" parameters raise the productivity of tomato plants and inhibit the sporulation of several isolates of the fungal pathogen Botrytis cinerea. Thus, a model for the photoregulation of these two phenomena in greenhouses is proposed.

A robust identification and detection assay to discriminate the cucumber pathogens Fusarium oxysporum f. sp. cucumerinum and f. sp. radicis-cucumerinum.

The fungal species Fusarium oxysporum is a ubiquitous inhabitant of soils worldwide that includes pathogenic as well as non-pathogenic or even beneficial strains. Pathogenic strains are characterized by a high degree of host specificity and strains that infect the same host range are organized in so-called formae speciales. Strains for which no host plant has been identified are believed to be non-pathogenic strains. Therefore, identification below the species level is highly desired. However, the genetic basis of host specificity and virulence in F. oxysporum is so far unknown. In this study, a robust random-amplified polymorphic DNA (RAPD) marker-based assay was developed to specifically detect and identify the economically important cucumber pathogens F. oxysporum f. sp. cucumerinum and F. oxysporum f. sp. radicis-cucumerinum. While the F. oxysporum radicis-cucumerinum strains were found to cluster in a separate clade based on elongation factor-1alpha phylogeny, strains belonging to F. oxysporum f. sp. cucumerinum were found to be genetically more diverse. This is reflected in the observation that specificity testing of the identified markers using a broad collection of F. oxysporum strains with all known vegetative compatibility groups of the target formae speciales, as well as representative strains belonging to other formae speciales, resulted in two cross-reactions for the F. oxysporum f. sp. cucumerimum marker. However, no cross-reactions were observed for the F. oxysporum f. sp. radicis-cucumerimum marker. This F. oxysporum f. sp. radicis-cucumerimum marker shows homology to Folyt1, a transposable element identified in the tomato pathogen F. oxysporum f. sp. lycopersici and may possibly play a role in host-range specificity in the target forma specialis. The markers were implemented in a DNA array that enabled parallel and sensitive detection and identification of the pathogens in complex samples from diverse origins.

Analysis of expressed sequence tag data and gene expression profiles involved in conidial germination of Fusarium oxysporum.

We obtained 3,372 tentative unique transcripts (TUTs) from a cDNA library of Fusarium oxysporum. A cDNA array with 3,158 TUTs was produced to analyze gene expression profiles in conidial germination. It seems that ras and other signaling genes, e.g., ccg, cooperatively initiate conidial germination in Fusarium by increasing protein synthesis.