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1.
J Mol Biol ; 314(4): 911-22, 2001 Dec 07.
Article in English | MEDLINE | ID: mdl-11734007

ABSTRACT

We are developing an experimental system for testing the effects of macromolecular crowding and molecular confinement on protein structure. In the present study, solvent effects on the secondary structure of two proteins were examined by circular dichroism following encapsulation in the hydrated pores of a silica glass matrix by the sol-gel method. Changes in the unfolded conformations of encapsulated apomyoglobin and reduced serum albumin were analyzed after equilibration with aqueous solutions of natural osmolytes, short-chain alcohols, polyethylene glycol, and a complete series of Hofmeister cations. In many instances, the alpha-helical content of the encapsulated protein was increased by addition of solutes at concentrations that have no effect on the protein in the absence of the glass. The results are discussed from the perspective of water structure. We argue that perturbed water at the silica interface causes an increase in the average free energy of the bulk water phase which, consequently, diminishes the strength of the hydrophobic effect inside the glass matrix and destabilizes the conformation of encapsulated proteins. We propose that solutes can increase the strength of the hydrophobic effect and influence folding equilibria without directly interacting with the protein. A hypothesis is provided for the apparent paradox that kosmotropic (strongly water binding) anions favor native protein structure, whereas chaotropic (weakly water binding) cations enhance native protein structure. The encapsulation results suggest that macromolecular crowding and molecular confinement are accompanied by hydration effects that may oppose or potentiate the stabilizing effects of excluded volume on protein structure, depending on the surface chemistry of the crowding agent and its influence on bulk water structure. In the crowded environment of a living cell, excluded volume effects, surface-induced water structure, and compatible solutes are expected to complement the dominant forces in protein folding.


Subject(s)
Apoproteins/chemistry , Apoproteins/metabolism , Myoglobin/chemistry , Myoglobin/metabolism , Protein Folding , Serum Albumin/chemistry , Serum Albumin/metabolism , Solvents/metabolism , Cations/metabolism , Circular Dichroism , Detergents/chemistry , Detergents/metabolism , Glass/chemistry , Humans , Methylamines/metabolism , Models, Chemical , Osmolar Concentration , Oxidation-Reduction , Polyethylene Glycols/chemistry , Polyethylene Glycols/metabolism , Protein Structure, Secondary , Silicon Dioxide/chemistry , Substrate Specificity , Thermodynamics , Water/chemistry , Water/metabolism
2.
J Biol Chem ; 276(48): 44798-803, 2001 Nov 30.
Article in English | MEDLINE | ID: mdl-11581253

ABSTRACT

The LYS7 gene in Saccharomyces cerevisiae encodes a protein (yCCS) that delivers copper to the active site of copper-zinc superoxide dismutase (CuZn-SOD, a product of the SOD1 gene). In yeast lacking Lys7 (lys7Delta), the SOD1 polypeptide is present but inactive. Mutants lacking the SOD1 polypeptide (sod1Delta) and lys7Delta yeast show very similar phenotypes, namely poor growth in air and aerobic auxotrophies for lysine and methionine. Here, we demonstrate certain phenotypic differences between these strains: 1) lys7Delta cells are slightly less sensitive to paraquat than sod1Delta cells, 2) EPR-detectable or "free" iron is dramatically elevated in sod1Delta mutants but not in lys7Delta yeast, and 3) although sod1Delta mutants show increased sensitivity to extracellular zinc, the lys7Delta strain is as resistant as wild type. To restore the SOD catalytic activity but not the zinc-binding capability of the SOD1 polypeptide, we overexpressed Mn-SOD from Bacillus stearothermophilus in the cytoplasm of sod1Delta yeast. Paraquat resistance was restored to wild-type levels, but zinc was not. Conversely, expression of a mutant CuZn-SOD that binds zinc but has no SOD activity (H46C) restored zinc resistance but not paraquat resistance. Taken together, these results strongly suggest that CuZn-SOD, in addition to its antioxidant properties, plays a role in zinc homeostasis.


Subject(s)
Superoxide Dismutase/chemistry , Superoxide Dismutase/physiology , Zinc/metabolism , Antioxidants/pharmacology , Catalysis , Copper/pharmacology , Cytoplasm/enzymology , Dose-Response Relationship, Drug , Electron Spin Resonance Spectroscopy , Ions , Lysine/chemistry , Methionine/chemistry , Mutation , Paraquat/pharmacology , Phenotype , Point Mutation , Protein Binding , Saccharomyces cerevisiae/enzymology , Superoxide Dismutase/genetics , Superoxide Dismutase-1 , Superoxides/metabolism , Zinc/pharmacology
3.
Protein Sci ; 10(2): 250-61, 2001 Feb.
Article in English | MEDLINE | ID: mdl-11266611

ABSTRACT

The sol-gel method of encapsulating proteins in a silica matrix was investigated as a potential experimental system for testing the effects of molecular confinement on the structure and stability of proteins. We demonstrate that silica entrapment (1) is fully compatible with structure analysis by circular dichroism, (2) allows conformational studies in contact with solvents that would otherwise promote aggregation in solution, and (3) generally enhances thermal protein stability. Lysozyme, alpha-lactalbumin, and metmyoglobin retained native-like solution structures following sol-gel encapsulation, but apomyoglobin was found to be largely unfolded within the silica matrix under control buffer conditions. The secondary structure of encapsulated apomyoglobin was unaltered by changes in pH and ionic strength of KCl. Intriguingly, the addition of other neutral salts resulted in an increase in the alpha-helical content of encapsulated apomyoglobin in accordance with the Hofmeister ion series. We hypothesize that protein conformation is influenced directly by the properties of confined water in the pores of the silica. Further work is needed to differentiate the steric effects of the silica matrix from the solvent effects of confined water on protein structure and to determine the extent to which this experimental system mimics the effects of crowding and confinement on the function of macromolecules in vivo.


Subject(s)
Apoproteins/chemistry , Lactalbumin/chemistry , Metmyoglobin/chemistry , Muramidase/chemistry , Myoglobin/chemistry , Protein Structure, Secondary , Protein Structure, Tertiary , Silicon Dioxide/chemistry , Animals , Calcium/pharmacology , Cattle , Chickens , Circular Dichroism , Dithiothreitol/pharmacology , Edetic Acid/pharmacology , Horses , Hydrogen-Ion Concentration , Ions , Potassium Chloride/pharmacology , Protein Binding , Protein Conformation , Protein Denaturation , Silica Gel , Temperature , Ultraviolet Rays
4.
J Biol Chem ; 275(38): 29187-92, 2000 Sep 22.
Article in English | MEDLINE | ID: mdl-10882731

ABSTRACT

A current hypothesis explaining the toxicity of superoxide anion in vivo is that it oxidizes exposed [4Fe-4S] clusters in certain vulnerable enzymes causing release of iron and enzyme inactivation. The resulting increased levels of "free iron" catalyze deleterious oxidative reactions in the cell. In this study, we used low temperature Fe(III) electron paramagnetic resonance (EPR) spectroscopy to monitor iron status in whole cells of the unicellular eukaryote, Saccharomyces cerevisiae. The experimental protocol involved treatment of the cells with desferrioxamine, a cell-permeant, Fe(III)-specific chelator, to promote oxidation of all of the "free iron" to the Fe(III) state wherein it is EPR-detectable. Using this method, a small amount of EPR-detectable iron was detected in the wild-type strain, whereas significantly elevated levels were found in strains lacking CuZn-superoxide dismutase (CuZn-SOD) (sod1 delta), Mn-SOD (sod2 delta), or both SODs, throughout their growth but particularly in stationary phase. The accumulation was suppressed by expression of wild-type human CuZn-SOD (in the sod1 delta mutant), by pmr1, a genetic suppressor of the sod delta mutant phenotype (in the sod1 delta sod2 delta double knockout strain), and by anaerobic growth. In wild-type cells, an increase in the EPR-detectable iron pool could be induced by treatment with paraquat, a redox-cycling drug that generates superoxide. Cells that were not pretreated with desferrioxamine had Fe(III) EPR signals that were equally as strong as those from treated cells, indicating that "free iron" accumulated in the ferric form in our strains in vivo. Our results indicate a relationship between superoxide stress and iron handling and support the above hypothesis for superoxide-related oxidative damage.


Subject(s)
Iron/metabolism , Saccharomyces cerevisiae/metabolism , Superoxide Dismutase/deficiency , Electron Spin Resonance Spectroscopy , Gene Expression Regulation, Enzymologic , Humans , Mutation , Superoxide Dismutase/genetics
5.
Biochemistry ; 39(28): 8125-32, 2000 Jul 18.
Article in English | MEDLINE | ID: mdl-10889018

ABSTRACT

Mutations in copper-zinc superoxide dismutase (CuZnSOD) cause 25% of familial amyotrophic lateral sclerosis (FALS) cases. This paper examines one such mutant, H46R, which has no superoxide dismutase activity yet presumably retains the gain-of-function activity that leads to disease. We demonstrate that Cu(2+) does not bind to the copper-specific catalytic site of H46R CuZnSOD and that Cu(2+) competes with other metals for the zinc binding site. Most importantly, Cu(2+) was found to bind strongly to a surface residue near the dimer interface of H46R CuZnSOD. Cysteine was identified as the new binding site on the basis of multiple criteria including UV-vis spectroscopy, RR spectroscopy, and chemical derivatization. Cysteine 111 was pinpointed as the position of the reactive ligand by tryptic digestion of the modified protein and by mutational analysis. This solvent-exposed residue may play a role in the toxicity of this and other FALS CuZnSOD mutations. Furthermore, we propose that the two cysteine 111 residues, found on opposing subunits of the same dimeric enzyme, may provide a docking location for initial metal insertion during biosynthesis of wild-type CuZnSOD in vivo.


Subject(s)
Amyotrophic Lateral Sclerosis/enzymology , Copper/metabolism , Cysteine/metabolism , Superoxide Dismutase/metabolism , Amyotrophic Lateral Sclerosis/genetics , Arginine/metabolism , Binding, Competitive , Cobalt/metabolism , Histidine/metabolism , Humans , Models, Molecular , Mutation , Protein Processing, Post-Translational , Saccharomyces cerevisiae , Silver/metabolism , Spectrum Analysis, Raman , Superoxide Dismutase/genetics , Titrimetry
6.
Arch Biochem Biophys ; 377(2): 296-303, 2000 May 15.
Article in English | MEDLINE | ID: mdl-10845707

ABSTRACT

Previous studies indicate that nitric oxide (NO) can serve as a regulator/disrupter of metal-metabolizing systems in cells and, indeed, this function may represent an important physiological and/or pathophysiological role for NO. In order to address possible mechanisms of this aspect of NO biology, the effect of NO on copper metabolism and toxicity in the yeast Saccharomyces cerevisiae was examined. Exposure of S. cerevisiae to NO resulted in an alteration of the activity of the copper-responsive transcription factor Acel. Low concentrations of the NO donor DEA/NO were found to slightly enhance copper-mediated activation of Acel. Since Acel regulates the expression of genes responsible for the protection of S. cerevisiae from metal toxicity, the effect of NO on the toxicity of copper toward S. cerevisiae was also examined. Interestingly, low concentrations of NO were also found to protect S. cerevisiae against the toxicity of copper. The effect of NO at high concentrations was, however, opposite. High concentrations of DEA/NO inhibited copper-mediated Acel activity. Correspondingly, high concentrations of DEA/NO (1 mM) dramatically enhanced copper toxicity. An intermediate concentration of DEA/NO (0.5 mM) exhibited a dual effect, enhancing toxicity at lower copper concentrations (<0.5 mM) and protecting at higher (> or =0.5 mM) copper concentrations. Thus, it is proposed that the ability of NO to both protect against (at low concentrations) and enhance (at high concentration) copper toxicity in S. cerevisiae is, at least partially, a result of its effect on Acel. The results of this study have implications for the role of NO as a mediator of metal metabolism.


Subject(s)
Copper/metabolism , DNA-Binding Proteins/metabolism , Nitric Oxide/metabolism , Saccharomyces cerevisiae Proteins , Saccharomyces cerevisiae/metabolism , Transcription Factors/metabolism , Copper/toxicity , Copper Sulfate/pharmacology , Dose-Response Relationship, Drug , Mutation , Nitric Oxide/physiology , Saccharomyces cerevisiae/genetics , Time Factors , Transcription, Genetic , Transformation, Genetic
7.
J Biol Inorg Chem ; 5(2): 189-203, 2000 Apr.
Article in English | MEDLINE | ID: mdl-10819464

ABSTRACT

We have investigated factors that influence the properties of the zinc binding site in yeast copper-zinc superoxide dismutase (CuZnSOD). The properties of yeast CuZnSOD are essentially invariant from pH 5 to pH 9. However, below this pH range there is a change in the nature of the zinc binding site which can be interpreted as either (1) a change in metal binding affinity from strong to weak, (2) the expulsion of the metal bound at this site, or (3) a transition from a normal distorted tetrahedral ligand orientation to a more symmetric arrangement of ligands. This change is strongly reminiscent of a similar pH-induced transition seen for the bovine protein and, based on the data presented herein, is proposed to be a property that is conserved among CuZnSODs. The transition demonstrated for the yeast protein is not only sensitive to the pH of the buffering solution but also to the occupancy and redox status of the adjacent copper binding site. Furthermore, we have investigated the effect of single site mutations on the pH- and redox-sensitivity of Co2+ binding at the zinc site. Each of the mutants H46R, H48Q, H63A, H63E, H80C, G85R, and D83H is capable of binding Co2+ to a zinc site with a distorted tetrahedral geometry similar to that of wild-type. However, they do so only if Cu+ is bound at the copper site or if the pH in raised to near physiological levels, indicating that the change at the zinc binding site seen in the wild-type is conserved in the mutants, albeit with an altered pKa. The mutants H71C and D83A did not bind Co2+ in a wild-type-like fashion under any of the conditions tested. This study reveals that the zinc binding site is exquisitely sensitive to changes in the protein environment. Since three of the mutant yeast proteins investigated here contain mutations analogous to those that cause ALS (amyotrophic lateral sclerosis) in humans, this finding implicates improper metal binding as a mechanism by which CuZnSOD mutants exert their toxic gain of function.


Subject(s)
Amyotrophic Lateral Sclerosis/enzymology , Saccharomyces cerevisiae/enzymology , Superoxide Dismutase/chemistry , Zinc/metabolism , Amyotrophic Lateral Sclerosis/genetics , Binding Sites , Cobalt/chemistry , Copper/chemistry , Dialysis , Hydrogen-Ion Concentration , Kinetics , Spectrophotometry, Ultraviolet , Superoxide Dismutase/genetics
8.
Biochemistry ; 39(18): 5413-21, 2000 May 09.
Article in English | MEDLINE | ID: mdl-10820013

ABSTRACT

The copper chaperone for superoxide dismutase (CCS) gene encodes a protein that is believed to deliver copper ions specifically to copper-zinc superoxide dismutase (CuZnSOD). CCS proteins from different organisms share high sequence homology and consist of three distinct domains; a CuZnSOD-like central domain 2 flanked by domains 1 and 3, which contain putative metal-binding motifs. We report deduced protein sequences from tomato and Arabidopsis, the first functional homologues of CCS identified in plants. We have purified recombinant human (hCCS) and tomato (tCCS) copper chaperone proteins, as well as a truncated version of tCCS containing only domains 2 and 3. Their cobalt(2+) binding properties in the presence and absence of mercury(2+) were characterized by UV-vis and circular dichroism spectroscopies and it was shown that hCCS has the ability to bind two spectroscopically distinct cobalt ions whereas tCCS binds only one. The cobalt binding site that is common to both hCCS and tCCS displayed spectroscopic characteristics of cobalt(2+) bound to four or three cysteine ligands. There are only four cysteine residues in tCCS, two in domain 1 and two in domain 3; all four are conserved in other CCS sequences including hCCS. Thus, an interaction between domain 1 and domain 3 is concluded, and it may be important in the copper chaperone mechanism of these proteins.


Subject(s)
Cobalt/chemistry , Molecular Chaperones/metabolism , Superoxide Dismutase/metabolism , Amino Acid Sequence , Arabidopsis , Circular Dichroism , Cloning, Molecular , Cysteine/metabolism , Humans , Solanum lycopersicum , Mercuric Chloride/pharmacology , Molecular Sequence Data , Plant Proteins/metabolism , Protein Binding , Sequence Alignment , Spectrophotometry , Superoxide Dismutase/biosynthesis
9.
J Biol Chem ; 275(16): 11645-9, 2000 Apr 21.
Article in English | MEDLINE | ID: mdl-10766782

ABSTRACT

Saccharomyces cerevisiae lacking copper-zinc superoxide dismutase (sod1) shows a series of defects, including reduced rates of aerobic growth in synthetic glucose medium and reduced ability to grow by respiration in glycerol-rich medium. In this work, we observed that addition of iron improved the respiratory growth of the sod1 mutant and in glucose medium total intracellular iron content was higher in the sod1 mutant than in wild type cells. Transcription of the high affinity iron transporter gene, FET3, was enhanced in the sod1 mutant, suggesting that iron transport systems were up-regulated. An sod1/fet3 double mutant showed increased sensitivity to oxygen and increased transcription of FET4, an alternative, low affinity, iron transporter. We propose that this increased iron demand in the sod1 mutant may be a reflection of the cells' efforts to reconstitute iron-sulfur cluster-containing enzymes that are continuously inactivated in conditions of excess superoxide.


Subject(s)
Iron/physiology , Oxidative Stress/physiology , Saccharomyces cerevisiae/enzymology , Superoxide Dismutase/physiology , Biological Transport/genetics , Glucose/metabolism , Homeostasis , Iron-Sulfur Proteins/physiology , Oxygen Consumption , Superoxide Dismutase/genetics , Superoxide Dismutase-1
10.
Proc Natl Acad Sci U S A ; 97(6): 2491-6, 2000 Mar 14.
Article in English | MEDLINE | ID: mdl-10694579

ABSTRACT

Nitric oxide (NO) was found to inhibit the copper-dependent induction of the yeast CUP1 gene. This effect is attributable to an inhibition of the copper-responsive CUP1 transcriptional activator Ace1. A mechanism is proposed whereby the metal binding thiols of Ace1 are chemically modified via NO- and O(2)-dependent chemistry, thereby diminishing the ability of Ace1 to bind and respond to copper. Moreover, it is proposed that demetallated Ace1 is proteolytically degraded in the cell, resulting in a prolonged inhibition of copper-dependent CUP1 induction. These findings indicate that NO may serve as a disrupter of yeast copper metabolism. More importantly, considering the similarity of Ace1 to other mammalian metal-binding proteins, this work lends support to the hypothesis that NO may regulate/disrupt metal homeostasis under both normal physiological and pathophysiological circumstances.


Subject(s)
DNA-Binding Proteins/metabolism , Fungal Proteins/metabolism , Metals/metabolism , Nitric Oxide/metabolism , Saccharomyces cerevisiae Proteins , Sulfhydryl Compounds/metabolism , Transcription Factors/metabolism , Carrier Proteins , Dose-Response Relationship, Drug , Metallothionein/metabolism , Models, Chemical , Plasmids , Quaternary Ammonium Compounds/metabolism , Saccharomyces cerevisiae/metabolism , Time Factors , beta-Galactosidase/metabolism
11.
Biochemistry ; 39(13): 3611-23, 2000 Apr 04.
Article in English | MEDLINE | ID: mdl-10736160

ABSTRACT

Copper-zinc superoxide dismutase (CuZnSOD) acquires its catalytic copper ion through interaction with another polypeptide termed the copper chaperone for SOD. Here, we combine X-ray crystallographic and analytical ultracentrifugation methods to characterize rigorously both truncated and full-length forms of apo-LYS7, the yeast copper chaperone for SOD. The 1.55 A crystal structure of LYS7 domain 2 alone (L7D2) was determined by multiple-isomorphous replacement (MIR) methods. The monomeric structure reveals an eight-stranded Greek key beta-barrel similar to that found in yeast CuZnSOD, but it is substantially elongated at one end where the loop regions of the beta-barrel come together to bind a calcium ion. In agreement with the crystal structure, sedimentation velocity experiments indicate that L7D2 is monomeric in solution under all conditions and concentrations that were tested. In contrast, sedimentation velocity and sedimentation equilibrium experiments show that full-length apo-LYS7 exists in a monomer-dimer equilibrium under nonreducing conditions. This equilibrium is shifted toward the dimer by approximately 1 order of magnitude in the presence of phosphate anion. Although the basis for the specificity of the LYS7-SOD interaction as well as the exact mechanism of copper insertion into SOD is unknown, it has been suggested that a monomer of LYS7 and a monomer of SOD may associate to form a heterodimer via L7D2. The data presented here, however, taken together with previously published crystallographic and analytical gel filtration data on full-length LYS7, suggest an alternative model wherein a dimer of LYS7 interacts with a dimer of yeast CuZnSOD. The advantages of the dimer-dimer model over the heterodimer model are enumerated.


Subject(s)
Copper/chemistry , Fungal Proteins/chemistry , Molecular Chaperones/chemistry , Peptide Fragments/chemistry , Saccharomyces cerevisiae Proteins , Saccharomyces cerevisiae/chemistry , Superoxide Dismutase/chemistry , Computer Simulation , Copper/metabolism , Crystallization , Crystallography, X-Ray , Dimerization , Fungal Proteins/metabolism , Models, Molecular , Molecular Chaperones/metabolism , Oxidation-Reduction , Peptide Fragments/metabolism , Protein Structure, Tertiary , Saccharomyces cerevisiae/enzymology , Solutions , Superoxide Dismutase/metabolism , Ultracentrifugation
12.
J Biol Chem ; 275(2): 1007-14, 2000 Jan 14.
Article in English | MEDLINE | ID: mdl-10625639

ABSTRACT

The presence of the copper ion at the active site of human wild type copper-zinc superoxide dismutase (CuZnSOD) is essential to its ability to catalyze the disproportionation of superoxide into dioxygen and hydrogen peroxide. Wild type CuZnSOD and several of the mutants associated with familial amyotrophic lateral sclerosis (FALS) (Ala(4) --> Val, Gly(93) --> Ala, and Leu(38) --> Val) were expressed in Saccharomyces cerevisiae. Purified metal-free (apoproteins) and various remetallated derivatives were analyzed by metal titrations monitored by UV-visible spectroscopy, histidine modification studies using diethylpyrocarbonate, and enzymatic activity measurements using pulse radiolysis. From these studies it was concluded that the FALS mutant CuZnSOD apoproteins, in direct contrast to the human wild type apoprotein, have lost their ability to partition and bind copper and zinc ions in their proper locations in vitro. Similar studies of the wild type and FALS mutant CuZnSOD holoenzymes in the "as isolated" metallation state showed abnormally low copper-to-zinc ratios, although all of the copper acquired was located at the native copper binding sites. Thus, the copper ions are properly directed to their native binding sites in vivo, presumably as a result of the action of the yeast copper chaperone Lys7p (yeast CCS). The loss of metal ion binding specificity of FALS mutant CuZnSODs in vitro may be related to their role in ALS.


Subject(s)
Copper/metabolism , Motor Neuron Disease/enzymology , Motor Neuron Disease/genetics , Superoxide Dismutase/genetics , Superoxide Dismutase/metabolism , Amino Acid Substitution , Binding Sites , Cations, Divalent/metabolism , Cations, Divalent/pharmacology , Humans , Hydrogen-Ion Concentration , Kinetics , Macromolecular Substances , Models, Molecular , Point Mutation , Protein Structure, Secondary , Recombinant Proteins/chemistry , Recombinant Proteins/metabolism , Saccharomyces cerevisiae , Spectrophotometry , Superoxide Dismutase/chemistry
13.
Arch Biochem Biophys ; 365(1): 131-42, 1999 May 01.
Article in English | MEDLINE | ID: mdl-10222047

ABSTRACT

Yeast lacking mitochondrial superoxide dismutase (MnSOD) display shortened stationary-phase survival and provide a good model system for studying mitochondrial oxidative damage. We observed a marked decrease in respiratory function preceding stationary-phase death of yeast lacking MnSOD (sod2Delta). Agents (mitochondrial inhibitors) that are known to increase or decrease superoxide production in submitochondrial particles affected stationary-phase survival in a manner inversely correlated with their effects on superoxide production, implicating superoxide in this mitochondrial disfunction. Similar but less-dramatic effects were observed in wild-type yeast. The activities of certain mitochondrial enzymes were particularly affected. In sod2Delta yeast the activity of aconitase, a 4Fe-4S-cluster-containing enzyme located in the matrix, was greatly and progressively decreased as the cells established stationary phase. Succinate dehydrogenase activity also decreased in MnSOD mutants; cytochrome oxidase and ATPase activities did not. Aconitase could be reactivated by addition of materials required for cluster assembly (Fe3+ and a sulfur source), both in extracts and in vivo, indicating that inactivation of the enzyme was by disassembly of the cluster. Our results support the conclusion that superoxide is generated in the mitochondria in vivo and under physiological conditions and that MnSOD is the primary defense against this toxicity. When the balance between superoxide generation and MnSOD activity is disrupted, superoxide mediates iron release from mitochondrial iron-sulfur clusters, leading first to loss of mitochondrial function and then to death, independently of mtDNA damage. These results raise the possibility that similar processes may occur in higher eukaryotes.


Subject(s)
Mitochondria/metabolism , Oxygen Consumption , Saccharomyces cerevisiae/cytology , Superoxide Dismutase/metabolism , Superoxides/toxicity , Carbonyl Cyanide p-Trifluoromethoxyphenylhydrazone/pharmacology , Cell Compartmentation , Cell Death , DNA Damage , Enzyme Inhibitors/pharmacology , Hydro-Lyases/metabolism , Iron-Sulfur Proteins/metabolism , Mutagens , Mutation , Saccharomyces cerevisiae/metabolism , Sodium Cyanide/pharmacology , Superoxide Dismutase/genetics
16.
Biochemistry ; 38(7): 2167-78, 1999 Feb 16.
Article in English | MEDLINE | ID: mdl-10026301

ABSTRACT

A reaction cycle is proposed for the mechanism of copper-zinc superoxide dismutase (CuZnSOD) that involves inner sphere electron transfer from superoxide to Cu(II) in one portion of the cycle and outer sphere electron transfer from Cu(I) to superoxide in the other portion of the cycle. This mechanism is based on three yeast CuZnSOD structures determined by X-ray crystallography together with many other observations. The new structures reported here are (1) wild type under 15 atm of oxygen pressure, (2) wild type in the presence of azide, and (3) the His48Cys mutant. Final R-values for the three structures are respectively 20.0%, 17.3%, and 20.9%. Comparison of these three new structures to the wild-type yeast Cu(I)ZnSOD model, which has a broken imidazolate bridge, reveals the following: (i) The protein backbones (the "SOD rack") remain essentially unchanged. (ii) A pressure of 15 atm of oxygen causes a displacement of the copper ion 0.37 A from its Cu(I) position in the trigonal plane formed by His46, His48, and His120. The displacement is perpendicular to this plane and toward the NE2 atom of His63 and is accompanied by elongated copper electron density in the direction of the displacement suggestive of two copper positions in the crystal. The copper geometry remains three coordinate, but the His48-Cu bond distance increases by 0.18 A. (iii) Azide binding also causes a displacement of the copper toward His63 such that it moves 1.28 A from the wild-type Cu(I) position, but unlike the effect of 15 atm of oxygen, there is no two-state character. The geometry becomes five-coordinate square pyramidal, and the His63 imidazolate bridge re-forms. The His48-Cu distance increases by 0.70 A, suggesting that His48 becomes an axial ligand. (iv) The His63 imidazole ring tilts upon 15 atm of oxygen treatment and azide binding. Its NE2 atom moves toward the trigonal plane by 0.28 and 0.66 A, respectively, in these structures. (v) The replacement of His48 by Cys, which does not bind copper, results in a five-coordinate square pyramidal, bridge-intact copper geometry with a novel chloride ligand. Combining results from these and other CuZnSOD crystal structures, we offer the outlines of a structure-based cyclic mechanism.


Subject(s)
Copper/chemistry , Superoxide Dismutase/chemistry , Zinc/chemistry , Amino Acid Substitution/genetics , Animals , Cattle , Crystallography, X-Ray , Cysteine/genetics , Histidine/genetics , Humans , Models, Molecular , Oxidation-Reduction , Oxygen/chemistry , Saccharomyces cerevisiae , Structure-Activity Relationship , Superoxide Dismutase/genetics , Xenopus laevis
17.
J Biol Chem ; 273(46): 30104-9, 1998 Nov 13.
Article in English | MEDLINE | ID: mdl-9804764

ABSTRACT

Mutations in copper-zinc superoxide dismutase (CuZn-SOD) have been implicated in the familial form of the motor neuron disease amyotrophic lateral sclerosis (Lou Gehrig's disease). We have expressed and purified recombinant human wild type (hWT) and G93A (hG93A) CuZn-SOD, and we have used pulse radiolysis to measure their superoxide dismutase activities and their rates of deactivation upon exposure to hydrogen peroxide or heat. Both hG93A and hWT CuZn-SOD were found to have high SOD activities in their copper and zinc containing as-isolated forms as well as when remetallated entirely with copper (CuCu). Rates of deactivation by hydrogen peroxide of the as-isolated hWT and hG93A enzymes were determined and were found to be similar, suggesting that the FALS mutant enzyme is not inactivated at a higher rate than wild type by generation of and subsequent reaction with hydroxyl radical, .OH, when it is in the CuZn form. However, rates of deactivation by hydrogen peroxide of the CuCu derivatives of both hWT and hG93A were significantly greater than those of the copper and zinc containing as-isolated enzymes. Rates of thermal deactivation were also similar for the mutant and hWT as-isolated CuZn forms but were greater for the CuCu derivatives of both enzymes. Reactions of hydrogen peroxide with the Cu(II)Cu(II) derivative of the WT enzyme demonstrate that the copper ion in the copper site is reduced much more rapidly than the copper in the zinc site, leading to the conclusion that reaction of hydrogen peroxide with Cu(I) in the copper site is the source of deactivation in the CuCu as well as the CuZn enzymes.


Subject(s)
Amyotrophic Lateral Sclerosis/enzymology , Hydrogen Peroxide/metabolism , Mutation , Superoxide Dismutase/metabolism , Amyotrophic Lateral Sclerosis/genetics , Binding Sites , Catalysis , Hot Temperature , Humans , Pulse Radiolysis , Saccharomyces cerevisiae , Spectrophotometry, Atomic , Superoxide Dismutase/genetics
18.
Protein Sci ; 7(9): 1915-29, 1998 Sep.
Article in English | MEDLINE | ID: mdl-9761472

ABSTRACT

The cDNAs encoding plantacyanin from spinach were isolated and characterized. In addition, four new cDNA sequences from Arabidopsis ESTs were identified that encode polypeptides resembling phytocyanins, plant-specific proteins constituting a distinct family of mononuclear blue copper proteins. One of them encodes plantacyanin from Arabidopsis, while three others, designated as uclacyanin 1, 2, and 3, encode protein precursors that are closely related to precursors of stellacyanins and a blue copper protein from pea pods. Comparative analyses with known phytocyanins allow further classification of these proteins into three distinct subfamilies designated as uclacyanins, stellacyanins, and plantacyanins. This specification is based on (1) their spectroscopic properties, (2) their glycosylation state, (3) the domain organization of their precursors, and (4) their copper-binding amino acids. The recombinant copper binding domain of Arabidopsis uclacyanin 1 was expressed, purified, and shown to bind a copper atom in a fashion known as "blue" or type 1. The mutant of cucumber stellacyanin in which the glutamine axial ligand was substituted by a methionine (Q99M) was purified and shown to possess spectroscopic properties similar to uclacyanin 1 rather than to plantacyanins. Its redox potential was determined by cyclic voltammetry to be +420 mV, a value that is significantly higher than that determined for the wild-type protein (+260 mV). The available structural data suggest that stellacyanins (and possibly other phytocyanins) might not be diffusible electron-transfer proteins participating in long-range electron-transfer processes. Conceivably, they are involved in redox reactions occurring during primary defense responses in plants and/or in lignin formation.


Subject(s)
Arabidopsis Proteins , Arabidopsis/chemistry , Copper/chemistry , Metalloproteins/chemistry , Plant Proteins/chemistry , Spinacia oleracea/chemistry , Amino Acid Sequence , Base Sequence , Binding Sites , Cloning, Molecular , Electrochemistry , Kinetics , Models, Molecular , Molecular Sequence Data , Oxidation-Reduction , Protein Structure, Secondary , Sequence Alignment , Sequence Analysis, DNA , Spectrophotometry
19.
Curr Opin Chem Biol ; 2(2): 253-62, 1998 Apr.
Article in English | MEDLINE | ID: mdl-9667937

ABSTRACT

The cellular biochemistry of dioxygen is Janus-faced. The good side includes numerous enzyme-catalyzed reactions of dioxygen that occur in respiration and normal metabolism, while the dark side encompasses deleterious reactions of species derived from dioxygen that lead to damage of cellular components. These reactive oxygen species have historically been perceived almost exclusively as agents of the dark side, but it has recently become clear that they play beneficial roles as well.


Subject(s)
Oxygen/chemistry , Antioxidants/metabolism , Iron-Sulfur Proteins/chemistry , Isoniazid/metabolism , Lipid Peroxidation/physiology , Nitric Oxide/physiology , Oxidative Stress/physiology , Proteins/chemistry , Reactive Oxygen Species/metabolism
20.
Protein Sci ; 7(3): 545-55, 1998 Mar.
Article in English | MEDLINE | ID: mdl-9541385

ABSTRACT

The X-ray crystal structure of a human copper/zinc superoxide dismutase mutant (G37R CuZnSOD) found in some patients with the inherited form of Lou Gehrig's disease (FALS) has been determined to 1.9 angstroms resolution. The two SOD subunits have distinct environments in the crystal and are different in structure at their copper binding sites. One subunit (subunit[intact]) shows a four-coordinate ligand geometry of the copper ion, whereas the other subunit (subunit[broken]) shows a three-coordinate geometry of the copper ion. Also, subunit(intact) displays higher atomic displacement parameters for backbone atoms ((B) = 30 +/- 10 angstroms2) than subunit(broken) ((B) = 24 +/- 11 angstroms2). This structure is the first CuZnSOD to show large differences between the two subunits. Factors that may contribute to these differences are discussed and a possible link of a looser structure to FALS is suggested.


Subject(s)
Amyotrophic Lateral Sclerosis/enzymology , Superoxide Dismutase , Arginine , Binding Sites , Copper , Crystallography, X-Ray , Dimerization , Glycine , Humans , Ligands , Models, Molecular , Point Mutation , Protein Conformation , Recombinant Proteins , Saccharomyces cerevisiae/enzymology , Structure-Activity Relationship , Superoxide Dismutase/genetics , Zinc
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