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1.
Mol Syst Biol ; 6: 397, 2010 Aug 10.
Article in English | MEDLINE | ID: mdl-20706207

ABSTRACT

Cell proliferation is the main driving force for plant growth. Although genome sequence analysis revealed a high number of cell cycle genes in plants, little is known about the molecular complexes steering cell division. In a targeted proteomics approach, we mapped the core complex machinery at the heart of the Arabidopsis thaliana cell cycle control. Besides a central regulatory network of core complexes, we distinguished a peripheral network that links the core machinery to up- and downstream pathways. Over 100 new candidate cell cycle proteins were predicted and an in-depth biological interpretation demonstrated the hypothesis-generating power of the interaction data. The data set provided a comprehensive view on heterodimeric cyclin-dependent kinase (CDK)-cyclin complexes in plants. For the first time, inhibitory proteins of plant-specific B-type CDKs were discovered and the anaphase-promoting complex was characterized and extended. Important conclusions were that mitotic A- and B-type cyclins form complexes with the plant-specific B-type CDKs and not with CDKA;1, and that D-type cyclins and S-phase-specific A-type cyclins seem to be associated exclusively with CDKA;1. Furthermore, we could show that plants have evolved a combinatorial toolkit consisting of at least 92 different CDK-cyclin complex variants, which strongly underscores the functional diversification among the large family of cyclins and reflects the pivotal role of cell cycle regulation in the developmental plasticity of plants.


Subject(s)
Arabidopsis Proteins/metabolism , Arabidopsis/cytology , Arabidopsis/metabolism , Cell Cycle Proteins/metabolism , Cell Cycle , Computational Biology , Cyclin-Dependent Kinases/metabolism , Cyclins/metabolism , DNA Replication , Luciferases/metabolism , Mitosis , Models, Biological , Multiprotein Complexes/metabolism , Protein Binding , Protein Interaction Mapping , Reproducibility of Results
2.
Proteomics ; 9(3): 598-609, 2009 Feb.
Article in English | MEDLINE | ID: mdl-19132681

ABSTRACT

While protein interaction studies and protein network modeling come to the forefront, the isolation and identification of protein complexes in a cellular context remains a major challenge for plant science. To this end, a nondenaturing extraction procedure was optimized for plant whole cell matrices and the combined use of gel filtration and BN-PAGE for the separation of protein complexes was studied. Hyphenation to denaturing electrophoresis and mass spectrometric analysis allows for the simultaneous identification of multiple (previously unidentified) protein interactions in single samples. The reliability and efficacy of the technique was confirmed (i) by the identification of well-studied plant protein complexes, (ii) by the presence of nonplant interologs for several of the novel complexes (iii) by presenting physical evidence of previously hypothetical plant protein interactions and (iv) by the confirmation of found interactions using co-IP. Furthermore practical issues concerning the use of this 2-D BN/SDS-PAGE display method for the analysis of protein-protein interactions are discussed.


Subject(s)
Plant Proteins/analysis , Proteome/analysis , Electrophoresis, Gel, Two-Dimensional/methods , Electrophoresis, Polyacrylamide Gel/methods , Immunoprecipitation
3.
Phytochemistry ; 68(22-24): 2773-85, 2007.
Article in English | MEDLINE | ID: mdl-18001808

ABSTRACT

Although secondary metabolism in Nicotiana tabacum (L.) (tobacco) is rather well studied, many molecular aspects of the biosynthetic pathways and their regulation remain to be disclosed, even for prominent compounds such as nicotine and other pyridine alkaloids. To identify players in tobacco pyridine alkaloid biosynthesis a functional screen was performed, starting from a tobacco gene collection established previously by means of combined transcript profiling and metabolite analysis. First, full-length cDNA clones were isolated for 34 genes, corresponding to tobacco transcript tag sequences putatively associated with pyridine alkaloid metabolism. Full-length open reading frames were transferred to pCaMV35S-steered overexpression vectors. The effects of plant transformation with these expression cassettes on the accumulation of nicotine and other pyridine alkaloids were assessed in transgenic tobacco Bright-Yellow 2 (BY-2) cell suspensions and hairy root cultures. This screen identified potential catalysers of tobacco pyridine metabolism, amongst which a lysine decarboxylase-like gene and a GH3-like enzyme. Overexpression of the GH3-like enzyme, presumably involved in auxin homeostasis and designated NtNEG1 (Nicotiana tabacum Nicotine-Enhancing GH3 enzyme 1), increased nicotine levels in BY-2 hairy roots significantly. This study shows how functional genomics-based identification of genes potentially involved in biosynthetic pathways followed by systematic functional assays in plant cells can be used at large-scale to decipher plant metabolic networks at the molecular level.


Subject(s)
Alkaloids/biosynthesis , Genes, Plant/genetics , Nicotiana/genetics , Nicotiana/metabolism , Plant Proteins/metabolism , Pyridines/metabolism , Alkaloids/chemistry , Cell Line , Gene Expression Regulation, Plant , Open Reading Frames , Plant Proteins/chemistry , Plant Proteins/genetics , Plant Roots/chemistry , Plant Roots/metabolism , Pyridines/chemistry , Nicotiana/cytology , Nicotiana/enzymology
4.
Mol Cell Proteomics ; 6(7): 1226-38, 2007 Jul.
Article in English | MEDLINE | ID: mdl-17426018

ABSTRACT

Defining protein complexes is critical to virtually all aspects of cell biology because many cellular processes are regulated by stable protein complexes, and their identification often provides insights into their function. We describe the development and application of a high throughput tandem affinity purification/mass spectrometry platform for cell suspension cultures to analyze cell cycle-related protein complexes in Arabidopsis thaliana. Elucidation of this protein-protein interaction network is essential to fully understand the functional differences between the highly redundant cyclin-dependent kinase/cyclin modules, which are generally accepted to play a central role in cell cycle control, in all eukaryotes. Cell suspension cultures were chosen because they provide an unlimited supply of protein extracts of actively dividing and undifferentiated cells, which is crucial for a systematic study of the cell cycle interactome in the absence of plant development. Here we report the mapping of a protein interaction network around six known core cell cycle proteins by an integrated approach comprising generic Gateway-based vectors with high cloning flexibility, the fast generation of transgenic suspension cultures, tandem affinity purification adapted for plant cells, matrix-assisted laser desorption ionization tandem mass spectrometry, data analysis, and functional assays. We identified 28 new molecular associations and confirmed 14 previously described interactions. This systemic approach provides new insights into the basic cell cycle control mechanisms and is generally applicable to other pathways in plants.


Subject(s)
Arabidopsis Proteins/metabolism , Arabidopsis/metabolism , Cell Cycle Proteins/metabolism , Cell Cycle/physiology , Arabidopsis/cytology , Arabidopsis Proteins/genetics , Cell Cycle Proteins/genetics , Cells, Cultured , Chromatography, Gel/methods , Cloning, Molecular/methods , Protein Interaction Mapping , Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization/methods
5.
Proteomics ; 7(1): 92-105, 2007 Jan.
Article in English | MEDLINE | ID: mdl-17149779

ABSTRACT

Banana (Musa spp.) multiple shoot meristems are an excellent model to study the meristem proteome. Using a 2-DE protocol developed for small amounts of tissue and MS-based cross species polypeptide identification, we have revealed the meristem proteome and investigated the influence of sucrose-mediated osmotic stress in a dehydration-tolerant variety. Proteins that were significantly up- or down-regulated due to the high-sucrose treatment were classified using non-parametric univariate statistics. Our results suggest that the maintenance of an osmoprotective intracellular sucrose concentration, the enhanced expression of particular genes of the energy-conserving glycolysis and the conservation of the cell wall integrity are essential to maintain homeostasis, to acclimate and to survive dehydration. By comparing the dehydration-tolerant variety with a dehydration-sensitive variety, we were able to distinguish several genotype-specific proteins (isoforms), and could associate the dehydration-tolerant variety with proteins involved in energy metabolism (e.g., phosphoglycerate kinase, phosphoglucomutase, UDP-glucose pyrophosphorylase) and proteins that are associated with stress adaptation (e.g., OSR40-like protein, abscisic stress ripening protein-like protein). This work shows that proteome analysis can be used successfully to perform quantitative difference analysis and to characterize genetic variations in a recalcitrant crop.


Subject(s)
Meristem/metabolism , Musa/metabolism , Plant Proteins/metabolism , Proteome/metabolism , Electrophoresis, Gel, Two-Dimensional , Osmotic Pressure , Plant Proteins/analysis , Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization
6.
Mol Plant Microbe Interact ; 19(12): 1431-43, 2006 Dec.
Article in English | MEDLINE | ID: mdl-17153927

ABSTRACT

We report on the early response of Arabidopsis thaliana to the obligate biotrophic pathogen Plasmodiophora brassicae at the hormone and proteome level. Using a CYCB1;1::GUS construct, the re-initiation of infection-related cell division is shown from 4 days after inoculation on. Sensitivity to cytokinins and auxins as well as the endogenous hormone levels are evaluated. Both an enhanced cytokinin gene response and an accumulation of isopentenyl adenine and adenosine precede this re-initiation of cell division, whereas an enhanced auxin gene response is observed from 6 days after inoculation on. The alhl mutant, impaired in the cross talk between ethylene and auxins, is resistant to P. brassicae. A differential protein analysis of infected versus noninfected roots and hypocotyls was performed using two-dimensional gel electrophoresis and quantitative image analysis, coupled to matrix-assisted laser desorption ionization time of flight-time of flight mass spectrometry-based protein identification. Of the visualized proteins, 12% show altered abundance compared with the noninfected plants, including proteins involved in metabolism, cell defense, cell differentiation, and detoxification. Combining the hormone and proteome data, we postulate that, at the very first stages of Plasmodiophora infection, plasmodial-produced cytokinins trigger a local re-initiation of cell division in the root cortex. Consequently, a de novo meristematic area is established that acts as a sink for host-derived indole-3-acetic acid, carbohydrates, nitrogen, and energy to maintain the pathogen and to trigger gall development.


Subject(s)
Arabidopsis Proteins/metabolism , Arabidopsis/microbiology , Fungi/physiology , Plant Diseases/microbiology , Plant Growth Regulators/metabolism , Arabidopsis/genetics , Arabidopsis/metabolism , Arabidopsis Proteins/genetics , Cell Division , Cytokinins/metabolism , Fungi/metabolism , Fungi/pathogenicity , Gene Expression Regulation, Plant , Glucuronidase/analysis , Immunity, Innate , Meristem/cytology , Meristem/metabolism , Meristem/microbiology , Mutation , Plant Diseases/genetics , Plant Roots/cytology , Plant Roots/metabolism , Plant Roots/microbiology , Promoter Regions, Genetic , Proteomics
7.
Naturwissenschaften ; 93(6): 278-85, 2006 Jun.
Article in English | MEDLINE | ID: mdl-16583236

ABSTRACT

Effects of auxin as plant hormones are widespread; in fact in almost all aspects of plant growth and development auxin plays a pivotal role. Although auxin is required for propagating cell division in plant cells, its effect upon cell division is least understood. If auxin is depleted from the culture medium, cultured cells cease to divide. It has been demonstrated in this context that the addition of auxin to auxin-starved nondividing tobacco BY-2 cells induced semisynchronous cell division. On the other hand, there are some cell lines, named habituated cells, that can grow without auxin. The cause and reason for the habituated cells have not been clarified. A habituated cell line named 2B-13 is derived from the tobacco BY-2 cell line, which has been most intensively studied among plant cell lines. When we tried to find the difference between two cell lines of BY-2 and 2B-13 cells, we found that the addition of culture filtrated from the auxin-habituated 2B-13 cells induced semisynchronous cell division in auxin-starved BY-2 cells. The cell division factor (CDF) that is responsible for inducing cell division in auxin-starved BY-2 cells was purified to near-homogeneity by sequential passage through a hydroxyapatite column, a ConA Sepharose column and a Sephadex gel filtration column. The resulting purified fraction appeared as a single band of high molecular weight on sodium dodecyl sulfate-polyacrylamide gel electrophoresis gels by silver staining and was able to induce cell division in auxin-starved BY-2 cells. Identification of the protein by MALD-TOF-MS/MS revealed that it is structurally related to P-glycoprotein from Gossypioides kirkii, which belongs to ATP-binding cassette (ABC)-transporters. The significance of CDF as a possible ABC-transporter is discussed in relationship to auxin-autotrophic growth and auxin-signaling pathway.


Subject(s)
Indoleacetic Acids/chemistry , Nicotiana/cytology , Nicotiana/physiology , Plant Proteins/chemistry , Amino Acid Sequence , Cell Division , Cells, Cultured , Mass Spectrometry , Molecular Sequence Data , Peptide Fragments/chemistry , Peptide Hydrolases , Plant Proteins/isolation & purification
8.
Planta ; 223(5): 917-31, 2006 Apr.
Article in English | MEDLINE | ID: mdl-16397798

ABSTRACT

Epiphylly, occurring in a somaclonal variant (EMB-2) of the interspecific hybrid Helianthus annuus x H. tuberosus, was used to investigate molecular and cyto-physiological mechanisms that underlie cellular fate change. EMB-2 plants are characterized by profuse proliferation of shoot- and embryo-like structures on some leaves. We addressed the putative relationship between cytokinins and knox genes in EMB-2 plants. A class I knox gene, HtKNOT1, was isolated from H. tuberosus. A high level of HtKNOT1 transcripts was detected in EMB-2 epiphyllous leaves compared to non-epiphyllous (NEP) ones. In addition, epiphylly was related to a localized increases in zeatin and N-glycosylated cytokinins. As ectopic morphogenesis proceeded, HtKNOT1 transcripts and zeatin co-localized and showed different patterns in ectopic shoot compared with embryo-like structures, consistent with the differential role of both cytokinin and knox genes in the two morphogenetic events. Notably, a massive shoot/embryo regeneration was induced in EMB-2 NEP leaves by in vitro zeatin treatment. These results clearly indicate that localized cytokinin accumulation and ectopic expression of HtKNOT1 are closely linked in the epiphylly of EMB-2 plants.


Subject(s)
Helianthus/metabolism , Plant Leaves/metabolism , Zeatin/metabolism , Amino Acid Sequence , Cytokinins/metabolism , Gene Expression Regulation, Plant , Genes, Homeobox , Genes, Plant , Helianthus/genetics , Helianthus/growth & development , Homeodomain Proteins/metabolism , Hybridization, Genetic , Meristem/metabolism , Molecular Sequence Data , Morphogenesis/drug effects , Plant Leaves/anatomy & histology , Plant Leaves/growth & development , Plant Proteins/metabolism , Plant Shoots/growth & development , Plant Stems/metabolism , Sequence Analysis, DNA , Zeatin/pharmacology
9.
Plant J ; 44(2): 290-9, 2005 Oct.
Article in English | MEDLINE | ID: mdl-16212607

ABSTRACT

The mitotic inducer gene from Schizosaccharomyces pombe, Spcdc25, was used as a tool to investigate regulation of G2/M in higher plants using the BY-2 (Nicotiana tabacum) cell line as a model. Spcdc25-expressing BY-2 cells exhibited a reduced mitotic cell size through a shortening of the G2 phase. The cells often formed isodiametric double files both in BY-2 cells and in cell suspensions derived from 35S::Spcdc25 tobacco plants. In Spcdc25-expressing cells, the tobacco cyclin-dependent kinase, NtCDKB1, showed high activity in early S phase, S/G2 and early M phase, whereas in empty vector cells CDKB1 activity was transiently high in early S phase but thereafter remained lower. Spcdc25-expressing cells also bypassed a block on G2/M imposed by the cytokinin biosynthetic inhibitor lovastatin (LVS). Surprisingly, cytokinins were at remarkably low levels in Spcdc25-expressing cells compared with the empty vector, explaining why these cells retained mitotic competence despite the presence of LVS. In conclusion, synchronised Spcdc25-expressing BY-2 cells divided prematurely at a small cell size, and they exhibited premature, but sustained, CDKB1 activity even though endogenous cytokinins were virtually undetectable.


Subject(s)
Cell Cycle Proteins/metabolism , Cell Division , Fungal Proteins/metabolism , G2 Phase , Nicotiana/cytology , Nicotiana/genetics , Schizosaccharomyces pombe Proteins/metabolism , ras-GRF1/metabolism , Aphidicolin/pharmacology , Cell Cycle Proteins/genetics , Cell Division/drug effects , Cell Size , Cells, Cultured , Cyclin-Dependent Kinases/metabolism , Fungal Proteins/genetics , G2 Phase/drug effects , Gene Expression Regulation, Plant , Lovastatin/pharmacology , Plant Proteins/metabolism , Plants, Genetically Modified , Schizosaccharomyces , Schizosaccharomyces pombe Proteins/genetics , Signal Transduction , Nicotiana/drug effects , Nicotiana/metabolism , ras-GRF1/genetics
10.
New Phytol ; 168(1): 99-108, 2005 Oct.
Article in English | MEDLINE | ID: mdl-16159325

ABSTRACT

In this study a combination of cytoenzymological and immunocytochemical techniques was used in order to demonstrate the presence of cyclic nucleotide metabolism in chloroplasts of higher plants. Catalytic cytochemistry was used to localize adenylyl cyclase activity by means of electron microscope investigation on Nicotiana tabacum cv. Petit Havana leaf fragments. Various immunocytochemical techniques were explored to visualize the presence of the second messenger adenosine 3':5'-cyclic monophosphate. Making use of adenylyl imidodiphosphate as a substrate, the enzyme activity was predominantly located at the intermembrane space of the chloroplast envelope. In order to provide further topographical information, intact, isolated chloroplasts were submitted to the same cytoenzymological procedure and revealed stromal adenylyl cyclase activity. Using high-pressure freezing as a physical fixative to obtain an instantaneous metabolic arrest the cellular vitrified water phase was sublimed under ultra-high vacuum by means of molecular distillation drying, avoiding recrystallization and hence redistribution of small highly diffusible molecules. This sequential combination preserved 3':5'-cAMP epitope retention in chloroplasts as was demonstrated by immunogold labelling. These results further substantiate in a unique way the growing evidence of the presence of an organelle-specific cAMP metabolism in higher plants. Furthermore the data presented support the status of chloroplasts as an excellent model to further investigate cAMP metabolism and to correlate it with a variety of physiological functions.


Subject(s)
Adenylyl Cyclases/metabolism , Chloroplasts/enzymology , Cyclic AMP/physiology , Nicotiana/enzymology , Chloroplasts/ultrastructure , Intracellular Membranes/enzymology , Plant Leaves/ultrastructure , Nicotiana/ultrastructure
11.
Plant Physiol ; 138(4): 2061-74, 2005 Aug.
Article in English | MEDLINE | ID: mdl-16040660

ABSTRACT

The changes in root system architecture (RSA) triggered by phosphate (P) deprivation were studied in Arabidopsis (Arabidopsis thaliana) plants grown for 14 d on 1 mM or 3 microM P. Two different temporal phases were observed in the response of RSA to low P. First, lateral root (LR) development was promoted between days 7 and 11 after germination, but, after day 11, all root growth parameters were negatively affected, leading to a general reduction of primary root (PR) and LR lengths and of LR density. Low P availability had contrasting effects on various stages of LR development, with a marked inhibition of primordia initiation but a strong stimulation of activation of the initiated primordia. The involvement of auxin signaling in these morphological changes was investigated in wild-type plants treated with indole-3-acetic acid or 2,3,5-triiodobenzoic acid and in axr4-1, aux1-7, and eir1-1 mutants. Most effects of low P on RSA were dramatically modified in the mutants or hormone-treated wild-type plants. This shows that auxin plays a major role in the P starvation-induced changes of root development. From these data, we hypothesize that several aspects of the RSA response to low P are triggered by local modifications of auxin concentration. A model is proposed that postulates that P starvation results in (1) an overaccumulation of auxin in the apex of the PR and in young LRs, (2) an overaccumulation of auxin or a change in sensitivity to auxin in the lateral primordia, and (3) a decrease in auxin concentration in the lateral primordia initiation zone of the PR and in old laterals. Measurements of local changes in auxin concentrations induced by low P, either by direct quantification or by biosensor expression pattern (DR5::beta-glucuronidase reporter gene), are in line with these hypotheses. Furthermore, the observation that low P availability mimicked the action of auxin in promoting LR development in the alf3 mutant confirmed that P starvation stimulates primordia emergence through increased accumulation of auxin or change in sensitivity to auxin in the primordia. Both the strong effect of 2,3,5-triiodobenzoic acid and the phenotype of the auxin-transport mutants (aux1, eir1) suggest that low P availability modifies local auxin concentrations within the root system through changes in auxin transport rather than auxin synthesis.


Subject(s)
Arabidopsis/metabolism , Indoleacetic Acids/metabolism , Phosphates/metabolism , Plant Roots/metabolism , Biological Transport, Active/physiology , Plant Roots/anatomy & histology , Time Factors
12.
J Biol Chem ; 280(17): 17512-9, 2005 Apr 29.
Article in English | MEDLINE | ID: mdl-15731114

ABSTRACT

Adenosine kinase (ADK), a key enzyme in the regulation of the intracellular level of adenosine is also speculated to be responsible for the conversion of cytokinin ribosides to their respective nucleotides. To elucidate the role of ADK in the cytokinin metabolism of tobacco BY-2 cells (Nicotiana tabacum cv. "Bright Yellow-2"; TBY-2), we have identified and characterized the full-length cDNAs encoding four ADK isoforms of N. tabacum and determined their catalytic properties. The four TBY-2 ADK isoforms (designated 1S, 2S, 1T, and 2T) display a high affinity for both adenosine (Km 1.88-7.30 microm) and three distinct types of cytokinin ribosides: isopentenyladenosine; zeatin riboside; and dihydrozeatin riboside (Km 0.30-8.71 microm). The Vmax/Km values suggest that ADK2S exhibits in vitro an overall higher efficiency in the metabolism of cytokinin ribosides than the other three isoforms. The expression pattern of NtADK genes is modulated significantly during the cell cycle. We suggest that the increased transcript accumulation of NtADK coupled to an increased ADK activity just prior to mitosis is associated with a very active cytokinin metabolism at that phase of the cell cycle of synchronized TBY-2 cells.


Subject(s)
Adenosine Kinase/chemistry , Cytokinins/metabolism , Nicotiana/enzymology , Adenosine/chemistry , Adenosine Kinase/metabolism , Animals , Aphidicolin/metabolism , Base Sequence , Blotting, Western , Cell Cycle , Cell Line , Cloning, Molecular , DNA Primers/chemistry , DNA, Complementary/metabolism , Databases as Topic , Electrophoresis, Polyacrylamide Gel , Gene Library , Gene Silencing , Kinetics , Mass Spectrometry , Mitosis , Molecular Sequence Data , Phylogeny , Polymerase Chain Reaction , Protein Isoforms , RNA Interference , RNA, Messenger/metabolism , Recombinant Proteins/chemistry , Sequence Homology, Nucleic Acid , Time Factors
13.
FEBS Lett ; 572(1-3): 118-22, 2004 Aug 13.
Article in English | MEDLINE | ID: mdl-15304334

ABSTRACT

Jasmonic acid (JA) plays a crucial role in plant fertility and defense responses. It exerts an inhibitory effect on plant growth when applied exogenously. This effect seems to be somehow related to a negative regulation of cell cycle progression in the meristematic tissues. In this report, we focus on the molecular events that occur during JA-induced G2 arrest. We demonstrate that JA prevents the accumulation of B-type cyclin-dependent kinases and the expression of cyclin B1;1, which are both essential for the initiation of mitosis. This feature suggests the existence of an early G2 checkpoint that is affected by JA.


Subject(s)
Cell Cycle/drug effects , Cyclin B/metabolism , Cyclin-Dependent Kinases/metabolism , Cyclopentanes/pharmacology , Nicotiana/chemistry , Aphidicolin/metabolism , Cell Line , Cyclin B/drug effects , Cyclin B1 , Cyclin-Dependent Kinases/drug effects , Kinetics , Oxylipins , Plant Growth Regulators/pharmacology , Nicotiana/drug effects , Nicotiana/enzymology
14.
Plant Physiol ; 135(1): 161-72, 2004 May.
Article in English | MEDLINE | ID: mdl-15133155

ABSTRACT

Jasmonic acid and methyl jasmonate play an essential role in plant defense responses and pollen development. Their levels are temporarily and spatially controlled in plant tissue. However, whereas jasmonate biosynthesis is well studied, metabolic pathways downstream of jasmonic acid are less understood. We studied the uptake and metabolism of jasmonic acid and methyl jasmonate in tobacco (Nicotiana tabacum) Bright Yellow-2 suspension culture. We found that upon uptake, jasmonic acid was metabolized to its Glc and gentiobiose esters, and hydroxylation at C-11 or C-12 occurred. Free hydroxylated jasmonates were the preferential fraction of the culture medium. Upon hydrolysis of methyl jasmonate to jasmonic acid, a similar set of conversions occurs. In contrast to jasmonic acid, none of its derivatives interfere with the G2/M transition in synchronized tobacco Bright Yellow-2 cells.


Subject(s)
Acetates/metabolism , Cyclopentanes/metabolism , Nicotiana/metabolism , Acetates/pharmacology , Cell Division/drug effects , Cell Division/physiology , Cells, Cultured , Cyclopentanes/pharmacology , Disaccharides/biosynthesis , G2 Phase/drug effects , G2 Phase/physiology , Glucose/biosynthesis , Kinetics , Mitosis/drug effects , Mitosis/physiology , Oxylipins , Nicotiana/cytology
15.
Proteomics ; 4(3): 720-7, 2004 Mar.
Article in English | MEDLINE | ID: mdl-14997494

ABSTRACT

Using two-dimensional gel electrophoresis (2-DE) and electrospray-tandem mass spectrometry (ESI-MS/MS), we have started the proteome analysis of the cell line Nicotiana tabacum cv. Bright Yellow-2 (tobacco BY-2). The BY-2 cell suspension culture is widely used as a model system to study the growth and development of plant cells. We present a protocol describing the sample preparation and 2-DE, enabling us to separate and display more than 1000 proteins from this cell culture. A reference gel was generated, using immobilized pH gradient isoelectric focusing in a linear gradient from pH 3 to 10 and 12% Sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE). Although the tobacco genome is not sequenced yet, a range of protein spots from this reference map was identified by means of a semi-automated liquid chromatography-ESI-quadrupole time of flight-tandem MS (LC-ESI-QTOF-MS-MS) setup and cross-species matching. These data were integrated in a database, which can be accessed at http://tby2-www.uia.ac.be/tby2/. On the on-line reference map, the identified protein spots are hyperlinked to individual protein entries. Each protein entry contains all identification information, as well as links to relevant entries in other on-line databases. Comprehensive search functions are implemented. Especially for an unsequenced but widespread model organism like tobacco BY-2, such a reference database is a convenient source for protein information that brings protein identification within reach without the need for extensive MS. This publicly accessible database provides a solid basis for tobacco BY-2 proteomics in the future.


Subject(s)
Databases as Topic , Electrophoresis, Gel, Two-Dimensional/methods , Nicotiana/metabolism , Spectrometry, Mass, Electrospray Ionization/methods , Electrophoresis, Polyacrylamide Gel , Genome, Plant , Hydrogen-Ion Concentration , Internet , Isoelectric Focusing , Mass Spectrometry , Silver Staining
16.
Rapid Commun Mass Spectrom ; 18(4): 499-504, 2004.
Article in English | MEDLINE | ID: mdl-14966859

ABSTRACT

In view of the ongoing debate on plant cyclic nucleotide metabolism, especially the functional presence of adenylyl cyclase, a novel detection method has been worked out to quantify the reaction product. Using uniformly labelled (15)N-ATP as a substrate for adenylyl cyclase, a qualitative and quantitative liquid chromatography/electrospray ionisation tandem mass spectrometry (LC/ESI-MS/MS) method was developed to measure de novo formed (15)N-adenosine 3',5'-cyclic monophosphate. Adenylyl cyclase activity was observed in chloroplasts obtained from Nicotiana tabacum cv. Petit Havana and the kinetic parameters and influence of various metabolic effectors are discussed in their context.


Subject(s)
Adenylyl Cyclases/metabolism , Chloroplasts/enzymology , Nicotiana/enzymology , Adenosine Triphosphate/analysis , Adenosine Triphosphate/metabolism , Cyclic AMP/metabolism , Molecular Structure , Nitrogen Isotopes , Spectrometry, Mass, Electrospray Ionization
17.
New Phytol ; 161(3): 761-771, 2004 Mar.
Article in English | MEDLINE | ID: mdl-33873729

ABSTRACT

• Cytokinin (CK) metabolism was analyzed in tomato (Lycopersicon esculentum) Rg-1 hybrids during in vitro shoot organogenesis from root explants. • Data were obtained by combining physicochemical analysis with quantification and in situ detection methods. • Although exogenous zeatin is added in all classical regeneration protocols, we show here that regenerating (Rg+ ) tomato explants did not require an exogenous CK source for regeneration. Irrespective of the presence or absence of exogenous zeatin, the endogenous CK levels were not affected by Rg-1 in the initial explants or in the early callus phase. In a later stage, and related to the presence of numerous shoots, the Rg+ explants showed much lower endogenous CK concentrations than the nonregenerating (rg- ) explants. Cells of rg- explants were not able to differentiate, despite their high endogenous CK content, and did not respond to exogenously applied CKs. • We show that the insensitivity of rg- explants to a hormonal signal, normally initiating regeneration, is not related to an altered endogenous CK metabolism. We therefore postulate that Rg-1 action involves a regeneration-specific CK receptor or a regeneration-specific CK signal transduction pathway.

18.
Plant Cell ; 15(11): 2532-50, 2003 Nov.
Article in English | MEDLINE | ID: mdl-14555694

ABSTRACT

Cytokinins are hormones that regulate cell division and development. As a result of a lack of specific mutants and biochemical tools, it has not been possible to study the consequences of cytokinin deficiency. Cytokinin-deficient plants are expected to yield information about processes in which cytokinins are limiting and that, therefore, they might regulate. We have engineered transgenic Arabidopsis plants that overexpress individually six different members of the cytokinin oxidase/dehydrogenase (AtCKX) gene family and have undertaken a detailed phenotypic analysis. Transgenic plants had increased cytokinin breakdown (30 to 45% of wild-type cytokinin content) and reduced expression of the cytokinin reporter gene ARR5:GUS (beta-glucuronidase). Cytokinin deficiency resulted in diminished activity of the vegetative and floral shoot apical meristems and leaf primordia, indicating an absolute requirement for the hormone. By contrast, cytokinins are negative regulators of root growth and lateral root formation. We show that the increased growth of the primary root is linked to an enhanced meristematic cell number, suggesting that cytokinins control the exit of cells from the root meristem. Different AtCKX-green fluorescent protein fusion proteins were localized to the vacuoles or the endoplasmic reticulum and possibly to the extracellular space, indicating that subcellular compartmentation plays an important role in cytokinin biology. Analyses of promoter:GUS fusion genes showed differential expression of AtCKX genes during plant development, the activity being confined predominantly to zones of active growth. Our results are consistent with the hypothesis that cytokinins have central, but opposite, regulatory functions in root and shoot meristems and indicate that a fine-tuned control of catabolism plays an important role in ensuring the proper regulation of cytokinin functions.


Subject(s)
Arabidopsis/growth & development , Cytokinins/metabolism , Meristem/growth & development , Oxidoreductases/metabolism , Plant Roots/growth & development , Plant Shoots/growth & development , Arabidopsis/enzymology , Arabidopsis/genetics , Arabidopsis Proteins/genetics , Arabidopsis Proteins/metabolism , Gene Expression Regulation, Developmental , Gene Expression Regulation, Plant , Glucuronidase/genetics , Glucuronidase/metabolism , Green Fluorescent Proteins , Luminescent Proteins/genetics , Luminescent Proteins/metabolism , Meristem/genetics , Meristem/metabolism , Multigene Family/genetics , Oxidoreductases/genetics , Plant Roots/genetics , Plant Roots/metabolism , Plant Shoots/genetics , Plant Shoots/metabolism , Plants, Genetically Modified , Recombinant Fusion Proteins/genetics , Recombinant Fusion Proteins/metabolism , Reproduction/genetics , Reproduction/physiology
19.
Rapid Commun Mass Spectrom ; 17(19): 2188-94, 2003.
Article in English | MEDLINE | ID: mdl-14515316

ABSTRACT

Using a parallel microcolumn switching liquid chromatography set-up coupled to a quadrupole time-of-flight mass spectrometer, a rapid liquid chromatography/mass spectrometric (LC/MS) protein identification method is presented. Without prior sample clean-up up to 300 protein digest samples a day can be processed. Using data-directed acquisition, up to 10 fragmentation analyses for each protein sample can be acquired in the same chromatographic run that can be used for database searching. Using internal peptide sequence information, protein databases and the various nucleic acid databases can both be queried for cross-species identification of the protein sample. The method was evaluated and put into force to generate data for a tobacco cell culture protein database.


Subject(s)
Nicotiana/chemistry , Proteins/analysis , Proteins/chemistry , Sequence Analysis, Protein/methods , Spectrometry, Mass, Electrospray Ionization , Cell Line , Chromatography, Liquid , Databases, Protein , Species Specificity , Time Factors , Nicotiana/cytology
20.
J Exp Bot ; 54(392): 2511-7, 2003 Nov.
Article in English | MEDLINE | ID: mdl-14512385

ABSTRACT

Understanding the complete picture of floral transition is still impaired by the fact that physiological studies mainly concern plant species whose genetics is poorly known, and vice versa. Arabidopsis thaliana has been successfully used to unravel signalling pathways by genetic and molecular approaches, but analyses are still required to determine the physiological signals involved in the control of floral transition. In this work, the putative role of cytokinins was investigated using vegetative plants of Arabidopsis (Columbia) induced to flower synchronously by a single 22 h long day. Cytokinins were analysed in leaf extracts, leaf phloem exudate and in the shoot apical meristem at different times during floral transition. It was found that, in both the leaf tissues and leaf exudate, isopentenyladenine forms of cytokinins increased from 16 h after the start of the long day. At 30 h, the shoot apical meristem of induced plants contained more isopentenyladenine and zeatin than vegetative controls. These cytokinin increases correlate well with the early events of floral transition.


Subject(s)
Arabidopsis/growth & development , Cytokinins/metabolism , Flowers/physiology , Meristem/physiology , Plant Leaves/physiology , Immunohistochemistry , Meristem/cytology
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