Discovering marine biodiversity in the 21st century.

We review the current knowledge of the biodiversity of the ocean as well as the levels of decline and threat for species and habitats. The lack of understanding of the distribution of life in the ocean is identified as a significant barrier to restoring its biodiversity and health. We explore why the science of taxonomy has failed to deliver knowledge of what species are present in the ocean, how they are distributed and how they are responding to global and regional to local anthropogenic pressures. This failure prevents nations from meeting their international commitments to conserve marine biodiversity with the results that investment in taxonomy has declined in many countries. We explore a range of new technologies and approaches for discovery of marine species and their detection and monitoring. These include: imaging methods, molecular approaches, active and passive acoustics, the use of interconnected databases and citizen science. Whilst no one method is suitable for discovering or detecting all groups of organisms many are complementary and have been combined to give a more complete picture of biodiversity in marine ecosystems. We conclude that integrated approaches represent the best way forwards for accelerating species discovery, description and biodiversity assessment. Examples of integrated taxonomic approaches are identified from terrestrial ecosystems. Such integrated taxonomic approaches require the adoption of cybertaxonomy approaches and will be boosted by new autonomous sampling platforms and development of machine-speed exchange of digital information between databases.

Characterization, Selection, and Trans-Species Polymorphism in the MHC Class II of Heermann's Gull (Charadriiformes).

The major histocompatibility complex (MHC) enables vertebrates to cope with pathogens and maintain healthy populations, thus making it a unique set of loci for addressing ecology and evolutionary biology questions. The aim of our study was to examine the variability of Heermann's Gull MHC class II (MHCIIB) and compare these loci with other Charadriiformes. Fifty-nine MHCIIB haplotypes were recovered from sixty-eight Heermann's Gulls by cloning, of them, twelve were identified as putative true alleles, forty-five as unique alleles, and two as pseudogenes. Intra and interspecific relationships indicated at least two loci in Heermann's Gull MHCIIB and trans-species polymorphism among Charadriiformes (coinciding with the documented evidence of two ancient avian MHCIIB lineages, except in the Charadriidae family). Additionally, sites under diversifying selection revealed a better match with peptide-binding sites inferred in birds than those described in humans. Despite the negative anthropogenic activity reported on Isla Rasa, Heermann's Gull showed MHCIIB variability consistent with population expansion, possibly due to a sudden growth following conservation efforts. Duplication must play an essential role in shaping Charadriiformes MHCIIB variability, buffering selective pressures through balancing selection. These findings suggest that MHC copy number and protected islands can contribute to seabird conservation.

Warm oceanographic anomalies and fishing pressure drive seabird nesting north.

Parallel studies of nesting colonies in Mexico and the United States show that Elegant Terns (Thalasseus elegans) have expanded from the Gulf of California Midriff Island Region into Southern California, but the expansion fluctuates from year to year. A strong inverse relationship between nesting pairs in three Southern California nesting areas [San Diego saltworks, Bolsa Chica Ecological Reserve, and Los Angeles Harbor (1991 to 2014)] and Isla Rasa in the Midriff (1980 to 2014) shows that terns migrate northward when confronting warm oceanographic anomalies (>1.0°C), which may decrease fish availability and hamper nesting success. Migration pulses are triggered by sea surface temperature anomalies localized in the Midriff and, secondarily, by reductions in the sardine population as a result of intensive fishing. This behavior is new; before year 2000, the terns stayed in the Midriff even when oceanographic conditions were adverse. Our results show that terns are responding dynamically to rapidly changing oceanographic conditions and fish availability by migrating 600 km northwest in search of more productive waters.

Seabird diets provide early warning of sardine fishery declines in the Gulf of California.

Small pelagic fisheries show wide fluctuations, generally attributed to oceanographic anomalies. Most data on these fisheries come from landings, often reporting sustained catches-per-unit-effort (CPUEs) until a decline occurs. Fishery-independent data are important as management tools. In this study we show that the proportions of Pacific Sardine and Northern Anchovy in the diet of three seabird species (California Brown Pelicans, Heermann's Gulls, and Elegant Terns) nesting in spring in the Gulf of California show significant relationships with CPUEs during the following season in gulls and terns, or during the same season in pelicans. As sardine availability for seabirds declines, CPUEs remain high until the fishery falls, one or two seasons later. A declining proportion of sardines in the seabirds' diet, combined with the status of the Pacific warm-phase anomaly (El Niño), give a reliable forecast of diminishing CPUEs and signals the need to reduce fishing efforts in the ensuing season.

Effects of parental age and food availability on the reproductive success of Heermann's gulls in the Gulf of California.

Parental age, body condition, and food availability have been found to influence breeding parameters in seabirds, such as clutch size, number of chicks hatched and fledged, hatching, fledging, and reproductive success. In this paper we analyze the influence of parental age and body condition estimated by body mass, and food availability estimated from catch per unit effort (CPUE) statistics for Pacific sardine (Sardinops caeruleus) + northern anchovy (Engraulis mordax) by the local fishing fleet, on the breeding parameters of the Heermann's Gull (Larus heermanni; a vulnerable species according to Mexican federal law) nesting in Isla Rasa, Gulf of California, Mexico. Results are based on data from 1123 recaptures of known-age individuals, ranging from 4 to 13 years of age, during seven observation years between 1989 and 1997. Ages of mated male and female gulls were positively correlated. Breeding parameters showed their lowest values in 1992, an El Niño year in which the birds also showed significantly lower individual masses for both males and females, and in which the local CPUE of sardine + anchovies was lowest. All breeding parameters increased significantly with parental age and were highest at 10-12 years. No significant statistical interactions were found between food availability and parental age on the breeding parameters. Through a path analysis we found that there is a strong chained relationship between variables: food availability, which is strongly driven by oceanographic conditions, affects both the survival of eggs into hatchlings and the survival of hatchlings into fledglings. This external factor and parental age, a biological factor intrinsic to each nesting couple, explain 41% of the observed between-nest variation in fledgling success.