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1.
Exp Brain Res ; 242(3): 619-637, 2024 Mar.
Article in English | MEDLINE | ID: mdl-38231387

ABSTRACT

Cilia are organelles extend from cells to sense external signals for tuning intracellular signaling for optimal cellular functioning. They have evolved sensory and motor roles in various cells for tissue organization and homeostasis in development and post-development. More than a thousand genes are required for cilia function. Mutations in them cause multisystem disorders termed ciliopathies. The null mutations in CC2D2A result in Meckel syndrome (MKS), which is embryonic lethal, whereas patients who have missense mutations in the C2 domain of CC2D2A display Joubert syndrome (JBTS). They survive with blindness and mental retardation. How C2 domain defects cause disease conditions is not understood. To answer this question, C2 domain of Cc2d2a (mice gene) was knocked down (KD) in IMCD-3 cells by shRNA. This resulted in defective cilia morphology observed by immunofluorescence analysis. To further probe the cellular signaling alteration in affected cells, gene expression profiling was done by RNAseq and compared with the controls. Bioinformatics analysis revealed that the differentially expressed genes (DEGs) have functions in cilia. Among the 61 cilia DEGs identified, 50 genes were downregulated and 11 genes were upregulated. These cilia genes are involved in cilium assembly, protein trafficking to the cilium, intraflagellar transport (IFT), cellular signaling like polarity patterning, and Hedgehog signaling pathway. This suggests that the C2 domain of CC2D2A plays a critical role in cilia assembly and molecular signaling hosted in cilia for cellular homeostasis. Taken together, the missense mutations in the C2 domain of CC2D2A seen in JBTS might have affected cilia-mediated signaling in neurons of the retina and brain.


Subject(s)
Abnormalities, Multiple , Cerebellum , Eye Abnormalities , Kidney Diseases, Cystic , Polycystic Kidney Diseases , Retina , Animals , Mice , Abnormalities, Multiple/genetics , Abnormalities, Multiple/metabolism , C2 Domains , Cerebellum/metabolism , Cerebellum/abnormalities , Cilia/genetics , Cilia/metabolism , Cytoskeletal Proteins/genetics , Eye Abnormalities/genetics , Eye Abnormalities/metabolism , Hedgehog Proteins/genetics , Hedgehog Proteins/metabolism , Mutation/genetics , Polycystic Kidney Diseases/genetics , Polycystic Kidney Diseases/metabolism , Retina/abnormalities
2.
Int J Food Microbiol ; 391-393: 110148, 2023 Apr 16.
Article in English | MEDLINE | ID: mdl-36868045

ABSTRACT

The incidence of antimicrobial resistance (AMR) is rapidly spreading worldwide. It is depleting the repertoire of antibiotics in use but the pace of development of new antibiotics is stagnant for decades. Annually, millions of people are killed by AMR. This alarming situation urged both scientific and civil bodies to take steps to curb AMR as a top priority. Here we review the various sources of AMR in the environment, especially focusing on the food chain. Food chain inculcates pathogens with AMR genes and serves as a conduit for its transmission. In certain countries, the antibiotics are more used in livestock than in humans. It is also used in agriculture crops of high value products. The indiscriminate use of antibiotics in livestock and agriculture increased rapid emergence of AMR pathogens. In addition, in many countries nosocomial settings are spewing AMR pathogens, which is a serious health hazard. Both the developed and low and middle income countries (LMIC) face the phenomenon of AMR. Therefore, a comprehensive approach for monitoring all sectors of life is required to identify the emerging trend of AMR in environment. AMR genes' mode of action must be understood to develop strategies to reduce risk. The new generation sequencing technologies, metagenomics and bioinformatics capabilities can be resorted to quickly identify and characterize AMR genes. The sampling for AMR monitoring can be done from multiples nodes of the food chain as envisioned and promoted by the WHO, FAO, OIE and UNEP under the One Health approach to overcome threat of AMR pathogens.


Subject(s)
Drug Resistance, Bacterial , One Health , Humans , Drug Resistance, Bacterial/genetics , Anti-Bacterial Agents/pharmacology , Food Chain , Metagenomics
3.
Biochem Biophys Res Commun ; 626: 1-7, 2022 10 20.
Article in English | MEDLINE | ID: mdl-35963044

ABSTRACT

Zinc stimulates intestinal iron absorption via induction of divalent metal ion transporter (DMT1) and hephaestin (HEPH). While the increase in DMT1 is mediated via a PI3K/IPR2 axis, the mechanisms of Zn-induced HEPH expression downstream of PI3K remain elusive. In the current study we probed the role of Caudal-related homeobox transcription factor-2 (CDX2) on Zn-induced HEPH expression. Zn treatment of Caco-2 cells increased CDX2 phosphorylation and HEPH protein and mRNA expression. siRNA-silencing of CDX2 inhibited Zn-induced HEPH expression. LY294002, an antagonist of PI3K inhibited Zn-induced phosphorylation of CDX2, and downstream HEPH expression. These results suggest that increased expression of HEPH in intestinal cells following Zn treatment is mediated via a PI3K-CDX2 pathway.


Subject(s)
Membrane Proteins/metabolism , Phosphatidylinositol 3-Kinases , Zinc , CDX2 Transcription Factor , Caco-2 Cells , Humans , Iron/metabolism , Phosphatidylinositol 3-Kinases/metabolism , Zinc/pharmacology
4.
Exp Brain Res ; 240(1): 9-25, 2022 Jan.
Article in English | MEDLINE | ID: mdl-34694467

ABSTRACT

The devastating COVID-19 pandemic is caused by the SARS-CoV-2 virus. It primarily affects the lung and induces acute respiratory distress leading to a decrease in oxygen supply to the cells. This lung insufficiency caused by SARS-CoV-2 virus contributes to hypoxia which can affect the brain and other organ systems. The heightened cytokine storm in COVID-19 patients leads to an immune reaction in the vascular endothelial cells that compromise the host defenses against the SARS-CoV-2 virus in various organs. The vascular endothelial cell membrane breach allows access for SARS-CoV-2 to infect multiple tissues and organs. The neurotropism of spike protein in SARS-CoV-2 rendered by furin site insertion may increase neuronal infections. These could result in encephalitis and encephalopathy. The COVID-19 patients suffered severe lung deficiency often showed effects in the brain and neural system. The early symptoms include headache, loss of smell, mental confusion, psychiatric disorders and strokes, and rarely encephalitis, which indicated the vulnerability of the nervous system to SARS-CoV-2. Infection of the brain and peripheral nervous system can lead to the dysfunction of other organs and result in multi-organ failure. This review focuses on discussing the vulnerability of the nervous system based on the pattern of expression of the receptors for the SARS-CoV-2 and the mechanisms of its cell invasion. The SARS-CoV-2 elicited immune response and host immune response evasion are further discussed. Then the effects on the nervous system and its consequences on neuro-sensory functions are discussed. Finally, the emerging information on the overall genetic susceptibility seen in COVID-19 patients and its implications for therapy outlook is discussed.


Subject(s)
COVID-19 , Nervous System Diseases , Stroke , Central Nervous System , Endothelial Cells , Humans , Pandemics , SARS-CoV-2
5.
Cell Biol Int ; 2021 Jul 21.
Article in English | MEDLINE | ID: mdl-34288241

ABSTRACT

Vertebrates have an elaborate and functionally segmented body. It evolves from a single cell by systematic cell proliferation but attains a complex body structure with exquisite precision. This development requires two cellular events: cell cycle and ciliogenesis. For these events, the dynamic molecular signaling is converged at the centriole. The cell cycle helps in cell proliferation and growth of the body and is a highly regulated and integrated process. Its errors cause malignancies and developmental disorders. The cells newly proliferated are organized during organogenesis. For a cellular organization, dedicated signaling hubs are developed in the cells, and most often cilia are utilized. The cilium is generated from one of the centrioles involved in cell proliferation. The developmental signaling pathways hosted in cilia are essential for the elaboration of the body plan. The cilium's compartmental seclusion is ideal for noise-free molecular signaling and is essential for the precision of the body layout. The dysfunctional centrioles and primary cilia distort the development of body layout that manifest as serious developmental disorders. Thus, centriole has a dual role in the growth and cellular organization. It organizes dynamically expressed molecules of cell cycle and ciliogenesis and plays a balancing act to generate new cells and organize them during development. A putative master molecule may regulate and coordinate the dynamic gene expression at the centrioles. The convergence of many critical signaling components at the centriole reiterates the idea that centriole is a major molecular workstation involved in elaborating the structural design and complexity in vertebrates. This article is protected by copyright. All rights reserved.

6.
Biology (Basel) ; 10(2)2021 Jan 29.
Article in English | MEDLINE | ID: mdl-33572760

ABSTRACT

Mucociliary defense, mediated by the ciliated and goblet cells, is fundamental to respiratory fitness. The concerted action of ciliary movement on the respiratory epithelial surface and the pathogen entrapment function of mucus help to maintain healthy airways. Consequently, genetic or acquired defects in lung defense elicit respiratory diseases and secondary microbial infections that inflict damage on pulmonary function and may even be fatal. Individuals living with chronic and acute respiratory diseases are more susceptible to develop severe coronavirus disease-19 (COVID-19) illness and hence should be proficiently managed. In light of the prevailing pandemic, we review the current understanding of the respiratory system and its molecular components with a major focus on the pathophysiology arising due to collapsed respiratory epithelium integrity such as abnormal ciliary movement, cilia loss and dysfunction, ciliated cell destruction, and changes in mucus rheology. The review includes protein interaction networks of coronavirus infection-manifested implications on the molecular machinery that regulates mucociliary clearance. We also provide an insight into the alteration of the transcriptional networks of genes in the nasopharynx associated with the mucociliary clearance apparatus in humans upon infection by severe acute respiratory syndrome coronavirus-2.

7.
Neuromolecular Med ; 20(1): 18-36, 2018 03.
Article in English | MEDLINE | ID: mdl-29423895

ABSTRACT

In eukaryotes, the cellular functions are segregated to membrane-bound organelles. This inherently requires sorting of metabolites to membrane-limited locations. Sorting the metabolites from ribosomes to various organelles along the intracellular trafficking pathways involves several integral cellular processes, including an energy-dependent step, in which the sorting of metabolites between organelles is catalyzed by membrane-anchoring protein Rab-GTPases (Rab). They contribute to relaying the switching of the secretory proteins between hydrophobic and hydrophilic environments. The intracellular trafficking routes include exocytic and endocytic pathways. In these pathways, numerous Rab-GTPases are participating in discrete shuttling of cargoes. Long-distance trafficking of cargoes is essential for neuronal functions, and Rabs are critical for these functions, including the transport of membranes and essential proteins for the development of axons and neurites. Rabs are also the key players in exocytosis of neurotransmitters and recycling of neurotransmitter receptors. Thus, Rabs are critical for maintaining neuronal communication, as well as for normal cellular physiology. Therefore, cellular defects of Rab components involved in neural functions, which severely affect normal brain functions, can produce neurological complications, including several neurodegenerative diseases. In this review, we provide a comprehensive overview of the current understanding of the molecular signaling pathways of Rab proteins and the impact of their defects on different neurodegenerative diseases. The insights gathered into the dynamics of Rabs that are described in this review provide new avenues for developing effective treatments for neurodegenerative diseases-associated with Rab defects.


Subject(s)
Nerve Tissue Proteins/physiology , Neurodegenerative Diseases/enzymology , Neurons/metabolism , rab GTP-Binding Proteins/physiology , Cell Compartmentation , Cilia/enzymology , Endocytosis , Exocytosis , Glycosylphosphatidylinositols/physiology , Homeostasis , Humans , Models, Molecular , Nerve Tissue Proteins/chemistry , Nervous System Diseases/enzymology , Neurites/physiology , Neurodegenerative Diseases/physiopathology , Neurons/ultrastructure , Protein Conformation , Protein Prenylation , Protein Translocation Systems/physiology , Protein Transport , Synaptic Vesicles/metabolism , rab GTP-Binding Proteins/chemistry
8.
Hum Mol Genet ; 26(12): 2218-2230, 2017 06 15.
Article in English | MEDLINE | ID: mdl-28369466

ABSTRACT

In retinal photoreceptors, vectorial transport of cargo is critical for transduction of visual signals, and defects in intracellular trafficking can lead to photoreceptor degeneration and vision impairment. Molecular signatures associated with routing of transport vesicles in photoreceptors are poorly understood. We previously reported the identification of a novel rod photoreceptor specific isoform of Receptor Expression Enhancing Protein (REEP) 6, which belongs to a family of proteins involved in intracellular transport of receptors to the plasma membrane. Here we show that loss of REEP6 in mice (Reep6-/-) results in progressive retinal degeneration. Rod photoreceptor dysfunction is observed in Reep6-/- mice as early as one month of age and associated with aberrant accumulation of vacuole-like structures at the apical inner segment and reduction in selected rod phototransduction proteins. We demonstrate that REEP6 is detected in a subset of Clathrin-coated vesicles and interacts with the t-SNARE, Syntaxin3. In concordance with the rod degeneration phenotype in Reep6-/- mice, whole exome sequencing identified homozygous REEP6-E75K mutation in two retinitis pigmentosa families of different ethnicities. Our studies suggest a critical function of REEP6 in trafficking of cargo via a subset of Clathrin-coated vesicles to selected membrane sites in retinal rod photoreceptors.


Subject(s)
Membrane Transport Proteins/metabolism , Retinal Rod Photoreceptor Cells/metabolism , Animals , Clathrin-Coated Vesicles/metabolism , Eye Proteins/genetics , Light Signal Transduction , Membrane Proteins , Membrane Transport Proteins/genetics , Mice , Mice, Knockout , Mutation , Photoreceptor Cells, Vertebrate/metabolism , Protein Isoforms/metabolism , Protein Transport , Qa-SNARE Proteins/metabolism , Retinal Degeneration/metabolism , Retinitis Pigmentosa/genetics , SNARE Proteins/metabolism
9.
Dis Model Mech ; 8(2): 109-29, 2015 Feb.
Article in English | MEDLINE | ID: mdl-25650393

ABSTRACT

Retinal neurodegeneration associated with the dysfunction or death of photoreceptors is a major cause of incurable vision loss. Tremendous progress has been made over the last two decades in discovering genes and genetic defects that lead to retinal diseases. The primary focus has now shifted to uncovering disease mechanisms and designing treatment strategies, especially inspired by the successful application of gene therapy in some forms of congenital blindness in humans. Both spontaneous and laboratory-generated mouse mutants have been valuable for providing fundamental insights into normal retinal development and for deciphering disease pathology. Here, we provide a review of mouse models of human retinal degeneration, with a primary focus on diseases affecting photoreceptor function. We also describe models associated with retinal pigment epithelium dysfunction or synaptic abnormalities. Furthermore, we highlight the crucial role of mouse models in elucidating retinal and photoreceptor biology in health and disease, and in the assessment of novel therapeutic modalities, including gene- and stem-cell-based therapies, for retinal degenerative diseases.


Subject(s)
Disease Models, Animal , Genetic Diseases, Inborn/therapy , Retinal Degeneration/therapy , Animals , Humans , Light Signal Transduction , Mice , Photoreceptor Cells, Vertebrate/pathology , Retina/pathology , Retina/physiopathology
10.
Biomed Res Int ; 2014: 495091, 2014.
Article in English | MEDLINE | ID: mdl-25386560

ABSTRACT

The intra- and extracellular accumulation of misfolded and aggregated amyloid proteins is a common feature in several neurodegenerative diseases, which is thought to play a major role in disease severity and progression. The principal machineries maintaining proteostasis are the ubiquitin proteasomal and lysosomal autophagy systems, where heat shock proteins play a crucial role. Many protein aggregates are degraded by the lysosomes, depending on aggregate size, peptide sequence, and degree of misfolding, while others are selectively tagged for removal by heat shock proteins and degraded by either the proteasome or phagosomes. These systems are compromised in different neurodegenerative diseases. Therefore, developing novel targets and classes of therapeutic drugs, which can reduce aggregates and maintain proteostasis in the brains of neurodegenerative models, is vital. Natural products that can modulate heat shock proteins/proteosomal pathway are considered promising for treating neurodegenerative diseases. Here we discuss the current knowledge on the role of HSPs in protein misfolding diseases and knowledge gained from animal models of Alzheimer's disease, tauopathies, and Huntington's diseases. Further, we discuss the emerging treatment regimens for these diseases using natural products, like curcumin, which can augment expression or function of heat shock proteins in the cell.


Subject(s)
Alzheimer Disease/metabolism , Curcumin/therapeutic use , Huntington Disease/metabolism , Neurodegenerative Diseases/metabolism , Alzheimer Disease/drug therapy , Alzheimer Disease/pathology , Heat-Shock Proteins/metabolism , Humans , Huntington Disease/drug therapy , Huntington Disease/pathology , Molecular Chaperones/metabolism , Neurodegenerative Diseases/drug therapy , Neurodegenerative Diseases/pathology , Protein Aggregation, Pathological/metabolism , Protein Folding , Proteostasis Deficiencies/drug therapy , Proteostasis Deficiencies/metabolism , Proteostasis Deficiencies/pathology , Ubiquitin/genetics , Ubiquitin/metabolism
11.
Nat Commun ; 5: 4207, 2014 Jun 20.
Article in English | MEDLINE | ID: mdl-24947469

ABSTRACT

The primary cilium originates from the mother centriole and participates in critical functions during organogenesis. Defects in cilia biogenesis or function lead to pleiotropic phenotypes. Mutations in centrosome-cilia gene CC2D2A result in Meckel and Joubert syndromes. Here we generate a Cc2d2a(-/-) mouse that recapitulates features of Meckel syndrome including embryonic lethality and multiorgan defects. Cilia are absent in Cc2d2a(-/-) embryonic node and other somatic tissues; disruption of cilia-dependent Shh signalling appears to underlie exencephaly in mutant embryos. The Cc2d2a(-/-) mouse embryonic fibroblasts (MEFs) lack cilia, although mother centrioles and pericentriolar proteins are detected. Odf2, associated with subdistal appendages, is absent and ninein is reduced in mutant MEFs. In Cc2d2a(-/-) MEFs, subdistal appendages are lacking or abnormal by transmission electron microscopy. Consistent with this, CC2D2A localizes to subdistal appendages by immuno-EM in wild-type cells. We conclude that CC2D2A is essential for the assembly of subdistal appendages, which anchor cytoplasmic microtubules and prime the mother centriole for axoneme biogenesis.


Subject(s)
Centrioles/metabolism , Cilia/pathology , Proteins/genetics , Alleles , Animals , Biological Transport , Centrosome/ultrastructure , Cilia/genetics , Cytoplasm/metabolism , Cytoskeletal Proteins , Fibroblasts/metabolism , Flow Cytometry , Hedgehog Proteins/metabolism , Macaca mulatta , Mice , Mice, Knockout , Microscopy, Electron, Scanning , Microscopy, Electron, Transmission , Microscopy, Immunoelectron , Microtubules/metabolism , Mutation , Phenotype , Proteins/physiology , Signal Transduction , Transgenes
12.
Hum Mol Genet ; 23(16): 4260-71, 2014 Aug 15.
Article in English | MEDLINE | ID: mdl-24691551

ABSTRACT

The Maf-family leucine zipper transcription factor NRL is essential for rod photoreceptor development and functional maintenance in the mammalian retina. Mutations in NRL are associated with human retinopathies, and loss of Nrl in mice leads to a cone-only retina with the complete absence of rods. Among the highly down-regulated genes in the Nrl(-/-) retina, we identified receptor expression enhancing protein 6 (Reep6), which encodes a member of a family of proteins involved in shaping of membrane tubules and transport of G-protein coupled receptors. Here, we demonstrate the expression of a novel Reep6 isoform (termed Reep6.1) in the retina by exon-specific Taqman assay and rapid analysis of complementary deoxyribonucleic acid (cDNA) ends (5'-RACE). The REEP6.1 protein includes 27 additional amino acids encoded by exon 5 and is specifically expressed in rod photoreceptors of developing and mature retina. Chromatin immunoprecipitation assay identified NRL binding within the Reep6 intron 1. Reporter assays in cultured cells and transfections in retinal explants mapped an intronic enhancer sequence that mediated NRL-directed Reep6.1 expression. We also demonstrate that knockdown of Reep6 in mouse and zebrafish resulted in death of retinal cells. Our studies implicate REEP6.1 as a key functional target of NRL-centered transcriptional regulatory network in rod photoreceptors.


Subject(s)
Basic-Leucine Zipper Transcription Factors/genetics , Eye Proteins/genetics , Membrane Transport Proteins/chemistry , Protein Isoforms/genetics , Retinal Rod Photoreceptor Cells/metabolism , Transcriptional Activation , Animals , Basic-Leucine Zipper Transcription Factors/metabolism , Enhancer Elements, Genetic , Eye Proteins/metabolism , Gene Regulatory Networks , HEK293 Cells , Humans , Introns , Membrane Proteins , Membrane Transport Proteins/genetics , Membrane Transport Proteins/metabolism , Mice, Inbred C57BL , Organ Specificity , Protein Isoforms/metabolism , Zebrafish
13.
J Neurochem ; 123(1): 44-59, 2012 Oct.
Article in English | MEDLINE | ID: mdl-22784109

ABSTRACT

NeuroD1 encodes a basic helix-loop-helix transcription factor involved in the development of neural and endocrine structures, including the retina and pineal gland. To determine the effect of NeuroD1 knockout in these tissues, a Cre/loxP recombination strategy was used to target a NeuroD1 floxed gene and generate NeuroD1 conditional knockout (cKO) mice. Tissue specificity was conferred using Cre recombinase expressed under the control of the promoter of Crx, which is selectively expressed in the pineal gland and retina. At 2 months of age, NeuroD1 cKO retinas have a dramatic reduction in rod- and cone-driven electroretinograms and contain shortened and disorganized outer segments; by 4 months, NeuroD1 cKO retinas are devoid of photoreceptors. In contrast, the NeuroD1 cKO pineal gland appears histologically normal. Microarray analysis of 2-month-old NeuroD1 cKO retina and pineal gland identified a subset of genes that were affected 2-100-fold; in addition, a small group of genes exhibit altered differential night/day expression. Included in the down-regulated genes are Aipl1, which is necessary to prevent retinal degeneration, and Ankrd33, whose protein product is selectively expressed in the outer segments. These findings suggest that NeuroD1 may act through Aipl1 and other genes to maintain photoreceptor homeostasis.


Subject(s)
Basic Helix-Loop-Helix Transcription Factors/deficiency , Basic Helix-Loop-Helix Transcription Factors/metabolism , Gene Expression Regulation/genetics , Photoreceptor Cells, Vertebrate/metabolism , Retina/cytology , Adaptor Proteins, Signal Transducing/metabolism , Analysis of Variance , Animals , Basic Helix-Loop-Helix Transcription Factors/genetics , Bromodeoxyuridine , Cell Survival/genetics , Electroretinography , Mice , Mice, Inbred C57BL , Mice, Knockout , Microarray Analysis , Microscopy, Electron, Transmission , Mucoproteins/deficiency , Mucoproteins/genetics , Oncogene Proteins , Opsins/genetics , Opsins/metabolism , Photoreceptor Cells, Vertebrate/ultrastructure , Pineal Gland/cytology , Pineal Gland/metabolism , Pineal Gland/ultrastructure , RNA, Messenger/metabolism , Retinal Degeneration/pathology , Transcription Factors/metabolism
14.
PLoS One ; 7(3): e34389, 2012.
Article in English | MEDLINE | ID: mdl-22479622

ABSTRACT

Bardet-Biedl Syndrome (BBS, MIM#209900) is a genetically heterogeneous disorder with pleiotropic phenotypes that include retinopathy, mental retardation, obesity and renal abnormalities. Of the 15 genes identified so far, seven encode core proteins that form a stable complex called BBSome, which is implicated in trafficking of proteins to cilia. Though BBS9 (also known as PTHB1) is reportedly a component of BBSome, its direct function has not yet been elucidated. Using zebrafish as a model, we show that knockdown of bbs9 with specific antisense morpholinos leads to developmental abnormalities in retina and brain including hydrocephaly that are consistent with the core phenotypes observed in syndromic ciliopathies. Knockdown of bbs9 also causes reduced number and length of cilia in Kupffer's vesicle. We also demonstrate that an orthologous human BBS9 mRNA, but not one carrying a missense mutation identified in BBS patients, can rescue the bbs9 morphant phenotype. Consistent with these findings, knockdown of Bbs9 in mouse IMCD3 cells results in the absence of cilia. Our studies suggest a key conserved role of BBS9 in biogenesis and/or function of cilia in zebrafish and mammals.


Subject(s)
Bardet-Biedl Syndrome/genetics , Cilia/genetics , Gene Knockdown Techniques , Neoplasm Proteins/genetics , Proteins/genetics , Zebrafish Proteins/genetics , Animals , Brain/abnormalities , Brain/embryology , Brain/metabolism , Cell Line , Cilia/pathology , Cytoskeletal Proteins , Humans , Mice , Microtubule-Associated Proteins , Morpholinos/genetics , RNA, Messenger/genetics , Retina/abnormalities , Retina/embryology , Retina/metabolism , Zebrafish/embryology
15.
J Clin Invest ; 122(4): 1233-45, 2012 Apr.
Article in English | MEDLINE | ID: mdl-22446187

ABSTRACT

Cilia are highly specialized microtubule-based organelles that have pivotal roles in numerous biological processes, including transducing sensory signals. Defects in cilia biogenesis and transport cause pleiotropic human ciliopathies. Mutations in over 30 different genes can lead to cilia defects, and complex interactions exist among ciliopathy-associated proteins. Mutations of the centrosomal protein 290 kDa (CEP290) lead to distinct clinical manifestations, including Leber congenital amaurosis (LCA), a hereditary cause of blindness due to photoreceptor degeneration. Mice homozygous for a mutant Cep290 allele (Cep290rd16 mice) exhibit LCA-like early-onset retinal degeneration that is caused by an in-frame deletion in the CEP290 protein. Here, we show that the domain deleted in the protein encoded by the Cep290rd16 allele directly interacts with another ciliopathy protein, MKKS. MKKS mutations identified in patients with the ciliopathy Bardet-Biedl syndrome disrupted this interaction. In zebrafish embryos, combined subminimal knockdown of mkks and cep290 produced sensory defects in the eye and inner ear. Intriguingly, combinations of Cep290rd16 and Mkksko alleles in mice led to improved ciliogenesis and sensory functions compared with those of either mutant alone. We propose that altered association of CEP290 and MKKS affects the integrity of multiprotein complexes at the cilia transition zone and basal body. Amelioration of the sensory phenotypes caused by specific mutations in one protein by removal of an interacting domain/protein suggests a possible novel approach for treating human ciliopathies.


Subject(s)
Antigens, Neoplasm/genetics , Bardet-Biedl Syndrome/genetics , Cilia/ultrastructure , Gene Expression Regulation, Developmental , Group II Chaperonins/genetics , Leber Congenital Amaurosis/genetics , Neoplasm Proteins/genetics , Nuclear Proteins/genetics , Sensation Disorders/genetics , Alleles , Amino Acid Sequence , Animals , Cell Cycle Proteins , Chaperonins/deficiency , Chaperonins/genetics , Chaperonins/physiology , Cytoskeletal Proteins , DNA Mutational Analysis , Ear/abnormalities , Ear/embryology , Eye Abnormalities/embryology , Eye Abnormalities/genetics , Genetic Complementation Test , Group II Chaperonins/deficiency , Group II Chaperonins/physiology , HEK293 Cells , Hair Cells, Auditory/ultrastructure , Humans , Mice , Mice, Inbred C57BL , Microtubule-Associated Proteins/deficiency , Microtubule-Associated Proteins/genetics , Microtubule-Associated Proteins/physiology , Molecular Sequence Data , Nuclear Proteins/deficiency , Nuclear Proteins/physiology , Olfactory Receptor Neurons/ultrastructure , Photoreceptor Connecting Cilium/ultrastructure , Protein Interaction Mapping , Sensation Disorders/pathology , Sensation Disorders/prevention & control , Sequence Alignment , Sequence Homology, Amino Acid , Zebrafish/embryology , Zebrafish/genetics , Zebrafish Proteins/deficiency , Zebrafish Proteins/genetics , Zebrafish Proteins/physiology
16.
J Neurosci ; 32(2): 528-41, 2012 Jan 11.
Article in English | MEDLINE | ID: mdl-22238088

ABSTRACT

Cone photoreceptors are the primary initiator of visual transduction in the human retina. Dysfunction or death of rod photoreceptors precedes cone loss in many retinal and macular degenerative diseases, suggesting a rod-dependent trophic support for cone survival. Rod differentiation and homeostasis are dependent on the basic motif leucine zipper transcription factor neural retina leucine zipper (NRL). The loss of Nrl (Nrl(-/-)) in mice results in a retina with predominantly S-opsin-containing cones that exhibit molecular and functional characteristics of wild-type cones. Here, we report that Nrl(-/-) retina undergoes a rapid but transient period of degeneration in early adulthood, with cone apoptosis, retinal detachment, alterations in retinal vessel structure, and activation and translocation of retinal microglia. However, cone degeneration stabilizes by 4 months of age, resulting in a thinner but intact outer nuclear layer with residual cones expressing S- and M-opsins and a preserved photopic electroretinogram. At this stage, microglia translocate back to the inner retina and reacquire a quiescent morphology. Gene profiling analysis during the period of transient degeneration reveals misregulation of genes related to stress response and inflammation, implying their involvement in cone death. The Nrl(-/-) mouse illustrates the long-term viability of cones in the absence of rods and retinal pigment epithelium defects in a rodless retina. We propose that Nrl(-/-) retina may serve as a model for elucidating mechanisms of cone homeostasis and degeneration that would be relevant to understanding diseases of the cone-dominant human macula.


Subject(s)
Apoptosis/genetics , Basic-Leucine Zipper Transcription Factors/genetics , Eye Proteins/genetics , Retina/abnormalities , Retina/metabolism , Retinal Cone Photoreceptor Cells/metabolism , Retinal Degeneration/physiopathology , Animals , Basic-Leucine Zipper Transcription Factors/deficiency , Disease Models, Animal , Female , Male , Mice , Mice, Inbred C57BL , Mice, Knockout , Retinal Cone Photoreceptor Cells/pathology , Retinal Degeneration/genetics , Retinal Degeneration/pathology , Retinal Detachment/genetics , Retinal Detachment/pathology , Retinal Detachment/physiopathology
17.
J Neurosci ; 29(8): 2597-610, 2009 Feb 25.
Article in English | MEDLINE | ID: mdl-19244536

ABSTRACT

The neuropeptide pigment-dispersing factor (PDF) is a key transmitter in the circadian clock of Drosophila melanogaster. PDF is necessary for robust activity rhythms and is thought to couple the circadian oscillations of the clock neurons. However, little is known about the action of PDF on individual clock neurons. Here, we combined the period-luciferase reporter system with immunolabeling of clock proteins in wild-type and Pdf(01) mutants to dissect the effects of PDF on specific subgroups of clock neurons. Additionally, PDF levels were elevated to higher than normal levels using specific neural mutants, and a correlation analysis of locomotor activity and clock protein staining served to determine the periods of specific clock cells. We found that PDF has multiple effects on the clock neurons: In some groups of clock neurons, PDF was required for maintaining the oscillations of individual cells, and in others, PDF was required for synchronous cycling of the individual members. Other clock neurons cycled with high amplitude in absence of PDF, but PDF affected their intrinsic clock speed. Sometimes PDF shortened and sometimes PDF lengthened period. Our observations indicate that PDF is crucial for adjusting cycling amplitude, period, and phase of the different players in the circadian clock. Under natural conditions PDF may be required for adapting Drosophila's clock to varying photoperiods. Indeed, we show here that Pdf(01) mutants are not able to adapt their activity to long photoperiods in a wild-type manner.


Subject(s)
Circadian Rhythm/genetics , Drosophila Proteins/metabolism , Gene Expression Regulation/physiology , Neuropeptides/metabolism , Nuclear Proteins/metabolism , Adaptation, Physiological/genetics , Analysis of Variance , Animals , Animals, Genetically Modified , Brain/cytology , Drosophila , Drosophila Proteins/genetics , Gene Expression Regulation/genetics , Insect Proteins/metabolism , Luciferases/metabolism , Models, Biological , Neurons/metabolism , Nuclear Proteins/genetics , Period Circadian Proteins , Time Factors
18.
Brain Res ; 1175: 1-9, 2007 Oct 17.
Article in English | MEDLINE | ID: mdl-17870061

ABSTRACT

Hypobaric hypoxia (HH), a predisposing environmental condition at high altitude (HA), encountered by many mountaineers, jeopardizes their normal physiology like motor coordination and cognitive functions. A large body of evidence shows that HH has deleterious effect on cognitive functions. Among them the hippocampal dependent memory deficit is well known. However, our current understanding of the mechanistic details of cognitive deficits at HA remains largely unclear and hence limits a solution for this problem. Therefore, the present study was designed to investigate the temporal component of the hippocampal pyramidal neuron damage in the rat brain subjected to chronic HH exposure. Three groups (sham HH, 3 days HH and 7 days HH) of rats were exposed to simulated HH equivalent to 6100 m in an animal decompression chamber for 3 or 7 days. Later, the hippocampal (CA1 and CA3) neurons were analysed for the cell morphology, neurodegeneration and DNA fragmentation. The CA1 and CA3 neurons showed HH induced neuronal pyknosis, cell shrinkage, and consequent inter-cellular vacuolization in the CA1 and CA3 areas. In addition, the total neuron (intact) numbers and mean surface area were decreased. The number of dead neurons increased significantly following exposure to HH for 3 or 7 days. The neurodegenerative (Fluoro jade B) and apoptotic (TUNEL) markers were more positive in CA1 and CA3 neurons. The magnitude of morphological changes, neurodegeneration and apoptosis was enhanced in 7 days HH group than 3 days HH group. Our studies indicate that CA3 neurons are more vulnerable to HH than CA1 neurons, and that may destabilize the neural circuits in the hippocampus and thus cause memory dysfunction.


Subject(s)
Altitude Sickness/physiopathology , Hippocampus/physiopathology , Hypoxia, Brain/physiopathology , Nerve Degeneration/physiopathology , Pyramidal Cells/pathology , Altitude Sickness/pathology , Animals , Apoptosis , DNA Fragmentation , Fluoresceins , Hippocampus/pathology , Hypoxia, Brain/pathology , In Situ Nick-End Labeling , Male , Memory Disorders/etiology , Memory Disorders/pathology , Memory Disorders/physiopathology , Nerve Degeneration/etiology , Nerve Degeneration/pathology , Neural Pathways/pathology , Neural Pathways/physiopathology , Organic Chemicals , Rats , Rats, Sprague-Dawley , Time Factors
19.
J Biol Rhythms ; 22(1): 29-42, 2007 Feb.
Article in English | MEDLINE | ID: mdl-17229923

ABSTRACT

Extraretinal photoreception is a common input route for light resetting signals into the circadian clock of animals. In Drosophila melanogaster, substantial circadian light inputs are mediated via the blue light photoreceptor CRYPTOCHROME (CRY) expressed in clock neurons within the brain. The current model predicts that, upon light activation, CRY interacts with the clock proteins TIMELESS (TIM) and PERIOD (PER), thereby inducing their degradation, which in turn leads to a resetting of the molecular oscillations within the circadian clock. Here the authors investigate the function of another putative extraretinal circadian photoreceptor, the Hofbauer-Buchner eyelet (H-B eyelet), located between the retina and the medulla in the fly optic lobes. Blocking synaptic transmission between the H-B eyelet and its potential target cells, the ventral circadian pacemaker neurons, impaired the flies' ability to resynchronize their behavior under jet-lag conditions in the context of nonfunctional retinal photoreception and a mutation in the CRY-encoding gene. The same manipulation also affected synchronized expression of the clock proteins TIM and PER in different subsets of the clock neurons. This shows that synaptic communication between the H-B eyelet and clock neurons contributes to synchronization of molecular and behavioral rhythms and confirms that the H-B eyelet functions as a circadian photoreceptor. Blockage of synaptic transmission from the H-B eyelet in the presence of functional compound eyes and the absence of CRY also results in increased numbers of flies that are unable to synchronize to extreme photoperiods, supplying independent proof for the role of the H-B eyelet as a circadian photoreceptor.


Subject(s)
Biological Clocks/physiology , Drosophila Proteins/metabolism , Drosophila melanogaster/physiology , Nuclear Proteins/metabolism , Photoreceptor Cells, Invertebrate/physiology , Animals , Circadian Rhythm/physiology , Gene Expression , Light , Motor Activity/physiology , Neurons/metabolism , Period Circadian Proteins , Photoperiod , Synaptic Transmission/physiology , Tetanus Toxin/metabolism
20.
Proc Natl Acad Sci U S A ; 103(46): 17313-8, 2006 Nov 14.
Article in English | MEDLINE | ID: mdl-17068124

ABSTRACT

Organisms use the daily cycles of light and darkness to synchronize their internal circadian clocks with the environment. Because they optimize physiological processes and behavior, properly synchronized circadian clocks are thought to be important for the overall fitness. In Drosophila melanogaster, the circadian clock is synchronized with the natural environment by light-dependent degradation of the clock protein Timeless, mediated by the blue-light photoreceptor Cryptochrome (Cry). Here we report identification of a genetic variant, Veela, which severely disrupts this process, because these genetically altered flies maintain behavioral and molecular rhythmicity under constant-light conditions that usually stop the clock. We show that the Veela strain carries a natural timeless allele (ls-tim), which encodes a less-light-sensitive form of Timeless in combination with a mutant variant of the F-box protein Jetlag. However, neither the ls-tim nor the jetlag genetic variant alone is sufficient to disrupt light input into the central pacemaker. We show a strong interaction between Veela and cryptochrome genetic variants, demonstrating that the Jetlag, Timeless, and Cry proteins function in the same pathway. Veela also reveals a function for the two natural variants of timeless, which differ in their sensitivity to light. In combination with the complex array of retinal and extraretinal photoreceptors known to signal light to the pacemaker, this previously undescribed molecular component of photic sensitivity mediated by the two Timeless proteins reveals that an unexpectedly rich complexity underlies modulation of this process.


Subject(s)
Circadian Rhythm/physiology , Drosophila Proteins/metabolism , Drosophila melanogaster/metabolism , Flavoproteins/metabolism , Light , Signal Transduction , Alleles , Amino Acid Sequence , Animals , Animals, Genetically Modified , Cryptochromes , Drosophila Proteins/chemistry , Drosophila Proteins/genetics , Drosophila melanogaster/genetics , F-Box Proteins/chemistry , F-Box Proteins/genetics , F-Box Proteins/metabolism , Flavoproteins/genetics , Molecular Sequence Data , Motor Activity , Mutation/genetics , Neuroglia/metabolism , Neurons/metabolism , Polymorphism, Genetic/genetics , Renin/metabolism , Sequence Alignment
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