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J Med Virol ; 78(5): 631-7, 2006 May.
Article in English | MEDLINE | ID: mdl-16555281

ABSTRACT

Human metapneumovirus (hMPV) is a newly identified paramixovirus, associated with respiratory illnesses in all age groups. Two genetic groups of hMPV have been described. The nucleotide sequences of the G and F genes from 11 Argentinean hMPV strains (1998-2003) were determined by RT-PCR and direct sequencing. Phylogenetic analysis showed that hMPV strains clustered into two main genetic lineages, A and B. Strains clustered into A group were split into two sublineages, A1 and A2. All strains belonging to group B clustered with representative strains from sublineage B1. No Argentinean strains belonged to sublineage B2. F sequences showed high percentage identities at nucleotide and amino acid levels. In contrast, G sequences showed high diversity between A and B groups. Most changes observed in the deduced G protein sequence were amino acid substitutions in the extracellular domain, and changes in stop codon usage leading to different lengths in the G proteins. High content of serine and threonine residues were also shown, suggesting that this protein would be highly glycosylated. The potential sites for N- and O-glycosylation seem to have a different conservation pattern between the two main groups. This is the first report on the genetic variability of the G and F protein genes of hMPV strains in South America. Two main genetic groups and at least three subgroups were revealed among Argentinean hMPV strains. The F protein seems to be highly conserved, whereas the G protein showed extensive diversity between groups A and B.


Subject(s)
Genes, Viral/genetics , Genetic Variation , Glycoproteins/genetics , Metapneumovirus/genetics , Paramyxoviridae Infections/virology , Viral Fusion Proteins/genetics , Viral Proteins/genetics , Amino Acid Sequence , Amino Acid Substitution , Argentina , Child, Preschool , Consensus Sequence , Humans , Infant , Metapneumovirus/classification , Molecular Sequence Data , Polymerase Chain Reaction , Sequence Alignment , Species Specificity
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