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1.
Sci Rep ; 14(1): 15941, 2024 Jul 10.
Article in English | MEDLINE | ID: mdl-38987633

ABSTRACT

Adeno-associated viruses (AAVs) are promising gene therapy vectors, but challenges arise when treating patients with preexisting neutralizing antibodies. Worldwide seroprevalence studies provide snapshots of existing immunity in diverse populations. Owing to the uniqueness of the Basque socio-geographical landscape, we investigated the seroprevalence of eight AAV serotypes in residents of the Basque Country. We found the highest seroprevalence of AAV3, and the lowest seroprevalence of AAV9. Additionally, less than 50% of the Basque population has neutralizing antibodies against AAV4, AAV6, and AAV9. Our findings provide insight into AAV infections in the Basque region, public health, and the development of AAV-based therapeutics.


Subject(s)
Antibodies, Neutralizing , Antibodies, Viral , Dependovirus , Humans , Dependovirus/genetics , Dependovirus/immunology , Seroepidemiologic Studies , Male , Female , Antibodies, Neutralizing/blood , Antibodies, Neutralizing/immunology , Adult , Antibodies, Viral/blood , Antibodies, Viral/immunology , Middle Aged , Spain/epidemiology , Young Adult , Cohort Studies , Parvoviridae Infections/epidemiology , Parvoviridae Infections/immunology , Parvoviridae Infections/virology , Serogroup
3.
ACS Omega ; 8(46): 43490-43499, 2023 Nov 21.
Article in English | MEDLINE | ID: mdl-38027314

ABSTRACT

The urgency to find complementary therapies to current SARS-CoV-2 vaccines, whose effectiveness is preserved over time and not compromised by the emergence of new and emerging variants, has become a critical health challenge. We investigate the possibility of jamming the opening of the Receptor Binding Domain (RBD) of the spike protein of SARS-CoV-2 with small compounds. Through in silico screening, we identified two potential candidates that would lock the Receptor Binding Domain (RBD) in a closed configuration, preventing the virus from infecting the host cells. We show that two drugs already approved by the FDA, mithramycin and dihydroergotamine, can block infection using concentrations in the µM range in cell-based assays. Further STD-NMR experiments support dihydroergotamine's direct interaction with the spike protein. Overall, our results indicate that repurposing of these compounds might lead to potential clinical drug candidates for the treatment of SARS-CoV-2 infection.

4.
Nat Struct Mol Biol ; 30(7): 958-969, 2023 07.
Article in English | MEDLINE | ID: mdl-37322239

ABSTRACT

Recycling of membrane proteins enables the reuse of receptors, ion channels and transporters. A key component of the recycling machinery is the endosomal sorting complex for promoting exit 1 (ESCPE-1), which rescues transmembrane proteins from the endolysosomal pathway for transport to the trans-Golgi network and the plasma membrane. This rescue entails the formation of recycling tubules through ESCPE-1 recruitment, cargo capture, coat assembly and membrane sculpting by mechanisms that remain largely unknown. Herein, we show that ESCPE-1 has a single-layer coat organization and suggest how synergistic interactions between ESCPE-1 protomers, phosphoinositides and cargo molecules result in a global arrangement of amphipathic helices to drive tubule formation. Our results thus define a key process of tubule-based endosomal sorting.


Subject(s)
Carrier Proteins , Endosomes , Endosomes/metabolism , Protein Transport , Carrier Proteins/metabolism , Membrane Proteins/metabolism , Cell Membrane/metabolism
5.
PLoS Pathog ; 16(8): e1008734, 2020 08.
Article in English | MEDLINE | ID: mdl-32853279

ABSTRACT

AMPylation, the post-translational modification with adenosine monophosphate (AMP), is catalyzed by effector proteins from a variety of pathogens. Legionella pneumophila is thus far the only known pathogen that, in addition to encoding an AMPylase (SidM/DrrA), also encodes a deAMPylase, called SidD, that reverses SidM-mediated AMPylation of the vesicle transport GTPase Rab1. DeAMPylation is catalyzed by the N-terminal phosphatase-like domain of SidD. Here, we determined the crystal structure of full length SidD including the uncharacterized C-terminal domain (CTD). A flexible loop rich in aromatic residues within the CTD was required to target SidD to model membranes in vitro and to the Golgi apparatus within mammalian cells. Deletion of the loop (Δloop) or substitution of its aromatic phenylalanine residues rendered SidD cytosolic, showing that the hydrophobic loop is the primary membrane-targeting determinant of SidD. Notably, deletion of the two terminal alpha helices resulted in a CTD variant incapable of discriminating between membranes of different composition. Moreover, a L. pneumophila strain producing SidDΔloop phenocopied a L. pneumophila ΔsidD strain during growth in mouse macrophages and displayed prolonged co-localization of AMPylated Rab1 with LCVs, thus revealing that membrane targeting of SidD via its CTD is a critical prerequisite for its ability to catalyze Rab1 deAMPylation during L. pneumophila infection.


Subject(s)
Bacterial Proteins/chemistry , Bacterial Proteins/metabolism , Cell Membrane/microbiology , Legionella pneumophila/enzymology , Legionnaires' Disease/microbiology , Adenosine Monophosphate/metabolism , Animals , Bacterial Proteins/genetics , Female , Golgi Apparatus/metabolism , Humans , Legionella pneumophila/chemistry , Legionella pneumophila/genetics , Mice , Protein Domains
6.
Cell ; 167(6): 1623-1635.e14, 2016 Dec 01.
Article in English | MEDLINE | ID: mdl-27889239

ABSTRACT

Retromer is a multi-protein complex that recycles transmembrane cargo from endosomes to the trans-Golgi network and the plasma membrane. Defects in retromer impair various cellular processes and underlie some forms of Alzheimer's disease and Parkinson's disease. Although retromer was discovered over 15 years ago, the mechanisms for cargo recognition and recruitment to endosomes have remained elusive. Here, we present an X-ray crystallographic analysis of a four-component complex comprising the VPS26 and VPS35 subunits of retromer, the sorting nexin SNX3, and a recycling signal from the divalent cation transporter DMT1-II. This analysis identifies a binding site for canonical recycling signals at the interface between VPS26 and SNX3. In addition, the structure highlights a network of cooperative interactions among the VPS subunits, SNX3, and cargo that couple signal-recognition to membrane recruitment.


Subject(s)
Cation Transport Proteins/chemistry , Multiprotein Complexes/chemistry , Sorting Nexins/chemistry , Vesicular Transport Proteins/chemistry , Amino Acid Sequence , Cation Transport Proteins/metabolism , Crystallography, X-Ray , Humans , Models, Molecular , Protein Isoforms/chemistry , Protein Isoforms/metabolism , Scattering, Small Angle , Sorting Nexins/metabolism , Vesicular Transport Proteins/metabolism
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