Formation of manganese phosphate and manganese carbonate during long-term sorption of Mn(2+) by viable Shewanella putrefaciens: effects of contact time and temperature.

The influence of temperature (5, 10, 22 and 30 °C) on the long-term (30 days) sorption of Mn(2+) by viable Shewanella putrefaciens was studied by FTIR and EXAFS. The additional Mn-removal capacity of these bacteria was found to result from the surface precipitation of Mn-containing inorganic phases. The chemical composition of the Mn-containing precipitates is temperature and contact-time dependent. Mn(ii) phosphate and Mn(ii) carbonate were the two major precipitates formed in 1000 mL batches at 10, 22 and 30 °C. The ratio of Mn(ii) phosphate to Mn(ii) carbonate was a function of the contact time. After 30 days, MnCO3 was the dominant phase in the precipitates at 10, 22 and 30 °C; however, MnCO3 did not form at 5 °C. Mn(ii) phosphate was the only precipitate formed at 5 °C over 30 days. The biosynthesis of Extracellular Polymeric Substances (EPS) was much greater at the lowest temperature (5 °C); however, these polymeric sugars did not contribute to the additional removal of Mn(ii) under the experimental conditions. This work is one of the first reports demonstrating the ability of microbes to bioprecipitate manganese phosphate and manganese carbonate. Because of the focus on interfacial processes, this is the first report showing a molecular-level mechanism for manganese carbonate formation (in contrast to the traditionally studied aged minerals).

Tutorial on academic high-performance cloud computing.

This documents shortly describes the background and structure of the academic high-performance cloud computing tutorial at the Healthgrid conference.

Sulfato-bridged ECE-pincer palladium(II) complexes: structures in the solid-state and in solution, and catalytic properties.

ECE-pincer sulfato palladium complexes (pincer = [C(6)H(3)(CH(2)E)(2)-2,6](-); E = SPh (), SMe (), S(t)Bu (), NMe(2) ()) were synthesized and characterized. In the solid-state (X-ray determinations) and exist as neutral ECE-pincer palladium sulfato complexes with a mu(2)-O,O' bridging sulfato ligand. IR and Raman spectroscopic studies revealed that in the solid-state the complexes can be present as either solely neutral or as a mixture of neutral and ionic species, depending on the preparation and morphology of the solids. In water, ionic complexes with non-coordinating sulfate ions prevail. Preliminary studies of the catalytic activity of in the Suzuki-Miyaura C-C cross-coupling reaction of 3-iodobenzoic acid and sodium tetraphenylborate in water reveal that the C-C cross-coupling product is efficiently formed in good yields at room temperature.

Extended structure design with simple molybdenum oxide building blocks and urea as a directing agent.

We report here a simple one-pot directed synthesis of an oxomolybdate urea composite in which elementary molybdenum oxide building blocks are linked together with the aid of urea. This type of directed material design resulted in large rod-like crystals of an inorganic-organic hybrid extended structure of {MoO 3(NH 2-CO-NH 2)} infinity consisting of right- and left-handed helical units. In the crystal structure urea acts both as a glue that links the inorganic molybdenum units into a helix and as a supramolecular linker for the stabilization of the crystal structure as a whole. This type of molecular topology resulted in an unexpectedly high thermal stability.

Prediction of long and short residue properties of crude oils from their infrared and near-infrared spectra.

Research has been carried out to determine the feasibility of chemometric modeling of infrared (IR) and near-infrared (NIR) spectra of crude oils to predict the long residue (LR) and short residue (SR) properties of these samples. A novel method is described to predict short residue properties at different flashing temperatures based on the IR spectrum of a crude oil measured at room temperature. The resulting method is the subject of European patent application number 07251853.3 filed by Shell Internationale Research Maatschappij B.V. The study has been carried out on 47 crude oils and 4 blends, representing a large variety of physical and chemical properties. From this set, 28 representative samples were selected by principle component analysis (PCA) and used for calibration. The remaining 23 samples were used as a test set to validate the obtained partial least squares (PLS) regression models. The results demonstrate that this integrated approach offers a fast and viable alternative for the currently applied elaborate ASTM (American Society for Testing and Materials) and IP (Institute of Petroleum) methods. IR spectra, in particular, were found to be a useful input for the prediction of different LR properties. Root mean square error of prediction values of the same order of magnitude as the reproducibility values of the ASTM methods were obtained for yield long on crude (YLC), density (D(LR)), viscosity (V(LR)), and pour point (PP), while the ability to predict the sulfur contents (S) and the carbon residue (CR) was found to be useful for indicative purposes. The prediction of SR properties is also promising. Modeling of the IR spectra, and to a lesser extent, the NIR spectra as a function of the average flash temperature (AFT) was particularly successful for the prediction of the short residue properties density (D(SR)) and viscosity (V(SR)). Similar results were obtained from the models to predict SR properties as a function of the yield short on crude (YSC) values. Finally, it was concluded that the applied protocol including sample pretreatment and instrumental measurement is highly reproducible and instrument and accessory independent.

Soluble factors released by ATDC5 cells affect the formation of calcium phosphate crystals.

During biomineralization the organism controls the nature, orientation, size and shape of the mineral phase. The aim of this study was to investigate whether proteins or vesicles that are constitutively released by growing ATDC5 cells have the ability to affect the formation of the calcium phosphate crystal. Therefore, subconfluent cultured ATDC5 cells were incubated for 1 h in medium without serum. Subsequently, medium was harvested and incubated for 24 h in the presence of additional Pi. This resulted in the formation of flat mineralizing structures (FMS), consisting of complex irregularly shaped flat crystals, which occasionally contained fiber-like structures ( approximately 40 microm in size). Without pre-incubation of medium with cells, only small punctate (dot like) calcium phosphate precipitates were observed. The formation of FMS was shown to be caused by soluble factors released by subconfluent ATDC5 cells. Proteomic analysis by mass spectrometry showed that FMS contained a specific set intracellular proteins, serum proteins, and extracellular matrix proteins. Bulk cytosolic proteins derived from homogenized cells or serum proteins did, however, not induce the formation of FMS. Conditioned medium from HeLa, CHO K1, RAW 264.7 and MDCK cells was also capable to form FMS under our experimental conditions. Therefore the formation of FMS seems to be caused by specific soluble factors constitutively released by ADTC5 and other cells. This in vitro model system can be used as a tool to identify factors that affect the shape of the biomineral phase.

Host-guest chemistry of copper(II)-histidine complexes encaged in zeolite Y.

Structural analysis has been carried out on copper(II)-histidine (Cu(2+)/His) complexes after immobilization in the pore system of the zeolites NaY and de-aluminated NaY (DAY). The aim of this study was to determine the geometrical structure of Cu(2+)/His complexes after encaging, to obtain insight into both the effect of the zeolite matrix on the molecular structure and redox properties of the immobilized complexes. In addition to N(2) physisorption and X-ray fluorescence (XRF) analyses, a combination of UV/Vis/NIR, ESR, X-ray absorption (EXAFS and XANES), IR, and Raman spectroscopy was used to obtain complementary information on both the first coordination shell of the copper ion and the orientation of the coordinating His ligands. It was demonstrated that two complexes (A and B) are formed, of which the absolute and relative abundance depends on the Cu(2+)/His concentration in the ion-exchange solution and on the Si/Al ratio of the zeolite material. In complex A, one His ligand coordinates in a tridentate facial-like manner through N(am), N(im), and O(c), a fourth position being occupied by an oxygen atom from a zeolite Brønsted site. In complex B, two His ligands coordinate as bidentate ligands; one histamine-like (N(am), N(im)) and the other one glycine-like (N(am), O(c)). In particular the geometrical structure of complex A differs from the preferred structure of Cu(2+)/His complexes in aqueous solutions; this fact implies that the zeolite host material actively participates in the coordination and orientation of the guest molecules. The tendency for complex A to undergo reduction in inert atmosphere to Cu(1+) (as revealed by dynamic XANES studies) suggests activation of complex A by the interaction with the zeolite material. EXAFS analysis confirms the formation of a distorted four coordinate geometry of complex A, suggesting that the combination of zeolite and one His ligand force the Cu(2+) complex into an activated, entactic state.

Dealing with a local heating effect when measuring catalytic solids in a reactor with Raman spectroscopy.

In continuation of our previous work on the applicability of the G(R(infinity)) correction factor for the quantification of Raman spectra of coke during propane dehydrogenation experiments (Phys. Chem. Chem. Phys., 2005, 7, 211), research has been carried out on the potential of this correction factor for the quantification of supported metal oxides during reduction experiments. For this purpose, supported chromium oxide catalysts have been studied by combined in situ Raman and UV-Vis spectroscopy during temperature programmed reduction experiments with hydrogen as reducing agent. The goal was to quantify on-line the amount of Cr(6+) in a reactor based on the measured in situ Raman spectra. During these experiments, a significant temperature effect was observed, which has been investigated in more detail with a thermal imaging technique. The results revealed a temperature 'on the spot' that can exceed 100 degrees C. It implies that Raman spectroscopy can have a considerable effect on the local reaction conditions and explains observed inconsistencies between the in situ UV-Vis and Raman data. In order to minimize this heating effect, reduction of the laser power, mathematical matching of the spectroscopic data, a different cell design and a change in reaction conditions has been evaluated. It is demonstrated that increasing the reactor temperature is the most feasible method to solve the heating problem. Next, it allows the application of in situ Raman spectroscopy in a reliable quantitative way without the need of an internal standard.

New insights into the coordination chemistry and molecular structure of copper(II) histidine complexes in aqueous solutions.

Aqueous solutions of Cu2+/histidine (his) (1:2) have been analyzed in parallel with infrared, Raman, ultraviolet/visible/near-infrared, electron spin resonance, and X-ray absorption spectroscopy in the pH range from 0 to 10. Comprehensive interpretation of the data has been used to extract complementary structural information in order to determine the relative abundance of the different complexes. The formation of six different, partly coexisting species is proposed. Structural proposals from literature have been unambiguously confirmed, refined, or, in several cases, corrected. At highly acidic conditions, Cu2+ and his are present as free ions, but around pH = 2, coordination starts via the deprotonated carboxylic acid group. This results in the intermediate species Cu2+[H3his+(Oc)] and Cu2+[H3his+(Oc)]2. The coordination via Oc is attended with a drop in the pKa value of the other receptor groups resulting in a concomitant conversion to the bidentates Cu2+[H2his0(Oc,Nam)] and Cu2+[H2his0(Oc,Nam)]2, with the latter being dominant at pH = 3.5. Coordination of the imidazole ring begins around pH = 3 and leads to the formation of the mixed ligand complexes Cu2+[H2his0(Oc,Nam)][Hhis-(Oc,Nam,Nim)] and Cu2+[Hhis-(Nam,Nim)][Hhis-(Oc,Nam,Nim)] around pH = 5. It is demonstrated that coordination of the imidazole ring occurs predominantly via the N(pi) atom. At pH > 7, the double-tridentate ligand complex Cu2+[Hhis-(Oc,Nam,Nim)]2 is the major species with the N atoms in the equatorial plane and the O atoms in the axial position. This complex decomposes at pH > 10 into a copper oxide/hydroxide precipitate. The overall results provide a consistent picture of the mechanism that drives the coordination and complex formation of the Cu2+/his system.

Neutral pyridyl-functionalized C,N-ortho-chelated aminoaryl platinum(II) corner building blocks for application in coordination reactions.

Two homoleptic pyridyl-functionalized C,N-ortho-chelating aminoaryl platinum(II) complexes, cis-[Pt(eta(2)-C,N)] (3a,b), were prepared via an unconventional method involving the initial synthesis of a bromide-functionalized C,N-chelating aminoaryl platinum(II) precursor complex 8, to which subsequently pyridyl groups were attached via a Suzuki-Miyaura C-C coupling reaction. The electron-donating properties of the pyridyl nitrogen atoms of the resulting complexes (3a,b) were used in complexation reactions with monocationic NCN-pincer (NCN = [C6H3(CH2NMe2)(2-)2,6]-) platinum(II) (11a) and palladium(II) (12a) nitrate complexes [M(NCN)(NO3)], thereby obtaining four trimetallic coordination complexes 16-19. The difference in the pyridine-metal coordination behavior between platinum and palladium was studied by varying the ratios of the reagents and by variable-temperature NMR experiments. IR and Raman analyses of 11a and 12a were performed to determine the coordination behavior of the nitrate counteranion, and it was found that both NO3- and H2O coordinate to the metal centers. The crystal structure determinations of free pyridyl complex 3a, [Pt(NCN)(NO3)] (11a), and [Pt(NCN)(NO3)].(H2O) (11b), as well as the crystal structure of trisplatinum coordination complex 16, are reported.

Spatially resolved Raman and UV-visible-NIR spectroscopy on the preparation of supported catalyst bodies: controlling the formation of H2PMo11CoO40 5- inside Al2O3 pellets during impregnation.

The physicochemical processes that occur during the preparation of CoMo-Al2O3 hydrodesulfurization catalyst bodies have been investigated. To this end, the distribution of Mo and Co complexes, after impregnation of gamma-Al2O3 pellets with different CoMoP solutions (i.e., solutions containing Co, Mo, and phosphate), was monitored by Raman and UV-visible-NIR microspectroscopy. From the speciation of the different complexes over the catalyst bodies, insight was obtained into the interaction of the different components in the impregnation solution with the Al2O3 surface. It is shown that, after impregnation with a solution containing H2PMo11CoO40(5-), the reaction of phosphate with the Al2O3 leads to the disintegration of this complex. The consecutive independent transport of Co2+ complexes (fast) and Mo6+ complexes (slow) through the pores of the Al2O3 is envisaged. By the addition of extra phosphate and citrate to the impregnation solution, the formation of the desired heteropolyanion can be achieved inside the pellets. Ultimately, the H2PMo11CoO40(5-) distribution could be controlled by varying the aging time applied after impregnation. The power of a combination of spatially resolved spectroscopic techniques to monitor the preparation of supported catalyst bodies is illustrated.

Atomic XAFS as a tool to probe the electronic properties of supported noble metal nanoclusters.

Atomic XAFS is a very attractive technique for probing electronic properties of supported metal nanoclusters. For platinum nanoparticles on different supports, the technique is found to be in good agreement with infrared CO adsorption measurements. The advantages of AXAFS, however, are that no probe molecule is required and that real-time measurements under reaction conditions are possible.

Size fractionation in a phase-separated colloidal fluid.

Phase separation of a polydisperse colloidal dispersion implies size fractionation. An application of this effect is given by size-selective purification procedures associated with the colloidal synthesis of so-called monodisperse nanoparticles. We used electron microscopy to determine detailed particle size distributions of coexisting colloidal fluid phases containing highly polydisperse iron oxide nanoparticles with a log-normal distribution (sigma = 0.54 for the total system). Analysis of N approximately 10000 particles per phase yields the first five statistical moments of the distributions. Within experimental error, the interdependence of the statistical moments is in quantitative agreement with the "universal law of fractionation" proposed by Evans, Fairhurst, and Poon [Phys. Rev. Lett. 1998, 81, 1326], even though the theory was derived in the limit of slight polydispersity.

Promotion effects in the oxidation of CO over zeolite-supported Pt nanoparticles.

Well-defined Pt-nanoparticles with an average diameter of 1 nm supported on a series of zeolite Y samples containing different monovalent (H+, Na+, K+, Rb+, and Cs+) and divalent (Mg2+, Ca2+, Sr2+, and Ba2+) cations have been used as model systems to investigate the effect of promotor elements in the oxidation of CO in excess oxygen. Time-resolved infrared spectroscopy measurements allowed us to study the temperature-programmed desorption of CO from supported Pt nanoparticles to monitor the electronic changes in the local environment of adsorbed CO. It was found that the red shift of the linear Pt-coordinated CO vibration compared to that of gas-phase CO increases with an increasing cation radius-to-charge ratio. In addition, a systematic shift from linear (L) to bridge (B) bonded CO was observed for decreasing Lewis acidity, as expressed by the Kamlet-Taft parameter alpha. A decreasing alpha results in an increasing electron charge on the framework oxygen atoms and therefore an increasing electron charge on the supported Pt nanoparticles. This observation was confirmed with X-ray absorption spectroscopy, and the intensity of the experimental Pt atomic XAFS correlates with the Lewis acidity of the cation introduced. Furthermore, it was found that the CO coverage increases with increasing electron density on the Pt nanoparticles. This increasing electron density was found to result in an increased CO oxidation activity; i.e., the T(50%) for CO oxidation decreases with decreasing alpha. In other words, basic promotors facilitate the chemisorption of CO on the Pt particles. The most promoted CO oxidation catalyst is a Pt/K-Y sample, which has a T(50%) of 390 K and a L:B intensity ratio of 2.7. The obtained results provide guidelines to design improved CO oxidation catalysts.

Mechanistic study into the direct epoxidation of propene over gold/titania catalysts.

The epoxidation of propene over gold/titania based catalysts was investigated using different techniques. Infrared spectroscopic information showed that one key step in the reaction mechanism is a reaction catalyzed by gold between titania surface groups and propene. In this reaction step, a bidentate propoxy species is formed on titania. This species adsorbs strongly on the catalyst, and it is the same species which is formed when propene oxide adsorbs on titania. Gravimetrical adsorption experiments and catalytic tests show that product adsorption and desorption are important factors determining the catalytic activity and the catalyst stability. By combining the information from different techniques, a kinetic mechanism is proposed.

Conversion of linoleic acid into novel oxylipins by the mushroom Agaricus bisporus.

Oxylipins are associated with important processes of the fungal life cycle, such as spore formation. Here, we report the formation of FA metabolites in Agaricus bisporus. Incubation of a crude extract of lamellae with linoleic acid (18:2) led to the extensive formation of two oxylipins. They were identified as 8(R)-hydroxy-9Z,12Z-octadecadienoic acid (8-HOD) and 8(R),11 (S)-dihydroxy-9Z,12Z-octadecadienoic acid (8,11-diHOD) by using RP-HPLC, GC-MS, IR, GC-MS analysis of diastereomeric derivatives, and 1H NMR and 13C NMR spectroscopy. Neither compound has been reported before in A. bisporus. Oleic (18:1), alpha-linolenic (18:3n-3), and gamma-linolenic (18:3n-6) acids were converted into their 8-hydroxy derivatives as well, and 18:3n-3 was further metabolized to its 8,11-diol derivative. Reactions with [U-13C]18:2 demonstrated that the compounds 8-HOD and 8,11-diHOD were formed from exogenously supplied 18:2. When [U-13C]8-HOD was supplied, it was not converted into 8,11-diHOD, indicating that it was not an intermediate in the formation of 8,11-diHOD. When a crude extract of A. bisporus was incubated under an atmosphere of 16O2/18O2, the two hydroxyl groups of 8,11-diHOD contained either two 180 atoms or two 60 atoms. Species that contained one of each isotope could not be detected. We propose that the formation of the 8,11-dihydroxy compounds occurs through either an 8,11-endoperoxy, an 8-peroxo free radical, or an 8-hydroperoxy intermediate. In the latter case, the reaction should be catalyzed by dioxygenase with novel specificity.

Envisaging the physicochemical processes during the preparation of supported catalysts: Raman microscopy on the impregnation of Mo onto Al2O3 extrudates.

Raman microscopy has been applied to study the preparation of shaped Mo/Al(2)O(3) catalysts. The speciation of different Mo complexes over gamma-Al(2)O(3) support bodies was followed in time after pore volume impregnation with aqueous solutions containing different Mo complexes. The addition of NO(3-) to the impregnation solutions allows for a quantitative Raman analysis of the distribution of different complexes over the catalyst bodies as this ion can be used as an internal standard. After impregnation with an acidic ammonium heptamolybdate (AHM) solution, the strong interaction between Mo(7)O(24)(6-) and Al(2)O(3) results in slow transport of this complex through the support and extensive formation of Al(OH)(6)Mo(6)O(18)(3-) near the outer surface of the support bodies. This may be prevented by decreasing the interaction between Mo and Al(2)O(3). In this way, transport is facilitated and a homogeneous distribution of Mo is obtained on a reasonable time scale. A decrease in interaction between Mo and Al(2)O(3) can be achieved by using alkaline impregnation solutions or by the addition of complexing agents, such as citrate and phosphate, to the impregnation solution. In general, time-resolved in situ Raman microscopy can be a valuable tool to study the physicochemical processes during the preparation of supported catalysts.

Physicochemical characterization of degradable thermosensitive polymeric micelles.

Amphiphilic AB block copolymers consisting of thermosensitive poly(N-(2-hydroxypropyl) methacrylamide lactate) and poly(ethylene glycol), pHPMAmDL-b-PEG, were synthesized via a macroinitiator route. Dynamic light scattering measurements showed that these block copolymers form polymeric micelles in water with a size of around 50 nm by heating of an aqueous polymer solution from below to above the critical micelle temperature (cmt). The critical micelle concentration as well as the cmt decreased with increasing pHPMAmDL block lengths, which can be attributed to the greater hydrophobicity of the thermosensitive block with increasing molecular weight. Cryogenic transmission electron microscopy analysis revealed that the micelles have a spherical shape with a narrow size distribution. 1H NMR measurements in D2O showed that the intensity of the peaks of the protons from the pHPMAmDL block significantly decreased above the cmt, indicating that the thermosensitive blocks indeed form the solidlike core of the micelles. Static light scattering measurements demonstrated that pHPMAmDL-b-PEG micelles with relatively large pHPMAmDL blocks possess a highly packed core that is stabilized by a dense layer of swollen PEG chains. FT-IR analysis indicated that dehydration of amide bonds in the pHPMAmDL block occurs when the polymer dissolved in water is heated from below to above its cmt. The micelles were stable when an aqueous solution of micelles was incubated at 37 degrees C and at pH 5.0, where the hydrolysis rate of lactate side groups is minimized. On the other hand, at pH 9.0, where hydrolysis of the lactic acid side groups occurs, the micelles started to swell after 1.5 h of incubation and complete dissolution of micelles was observed after 4 h as a result of hydrophilization of the thermosensitive block. Fluorescence spectroscopy measurements with pyrene loaded in the hydrophobic core of the micelles showed that when these micelles were incubated at pH 8.6 and at 37 degrees C the microenvironment of pyrene became increasingly hydrated in time during this swelling phase. The results demonstrate the potential applicability of pHPMAmDL-b-PEG block copolymer micelles for the controlled delivery of hydrophobic drugs.