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1.
Proc Natl Acad Sci U S A ; 119(6)2022 02 08.
Article in English | MEDLINE | ID: mdl-35131853

ABSTRACT

Bacterial cells interact with solid surfaces and change their lifestyle from single free-swimming cells to sessile communal structures (biofilms). Cyclic di-guanosine monophosphate (c-di-GMP) is central to this process, yet we lack tools for direct dynamic visualization of c-di-GMP in single cells. Here, we developed a fluorescent protein-based c-di-GMP-sensing system for Escherichia coli that allowed us to visualize initial signaling events and assess the role played by the flagellar motor. The sensor was pH sensitive, and the events that appeared on a seconds' timescale were alkaline spikes in the intracellular pH. These spikes were not apparent when signals from different cells were averaged. Instead, a signal appeared on a minutes' timescale that proved to be due to an increase in intracellular c-di-GMP. This increase, but not the alkaline spikes, depended upon a functional flagellar motor. The kinetics and the amplitude of both the pH and c-di-GMP responses displayed cell-to-cell variability indicative of the distinct ways the cells approached and interacted with the surface. The energetic status of a cell can modulate these events. In particular, the alkaline spikes displayed an oscillatory behavior and the c-di-GMP increase was modest in the presence of glucose.


Subject(s)
Escherichia coli Proteins/metabolism , Escherichia coli/metabolism , Signal Transduction/physiology , Cyclic GMP/metabolism , Flagella/metabolism , Gene Expression Regulation, Bacterial/physiology , Glass , Hydrogen-Ion Concentration , Second Messenger Systems/physiology , Surface Properties
2.
Dev Cell ; 35(6): 737-49, 2015 Dec 21.
Article in English | MEDLINE | ID: mdl-26702832

ABSTRACT

Nuclear Dbf2-related (NDR) kinases play a central role in limiting growth in most animals. Signals that promote growth do so in part by suppressing the activation of NDR kinases by STE20/Hippo kinases. Here, we identify another mechanism for downregulating NDR kinase activity. Specifically, we show that activity of the Drosophila NDR kinase Warts in the developing wing depends on its transition from an inactive, "closed" conformation to a potentially active, "open" conformation mediated by Mats, a conserved Mps1-binder (Mob) protein. Further, we show that signaling interactions between the protocadherins Fat and Dachsous, organized by the morphogens Wingless and Decapentaplegic, suppress Warts by acting via the atypical myosin Dachs to inhibit or reverse this transition. The regulation of Warts conformation by Mats, Fat/Dachsous signaling, and Dachs appears independent of Warts phosphorylation by Hippo kinase, establishing a precedent for the control of NDR kinases, and hence growth, by distinct allosteric and phosphorylation mechanisms.


Subject(s)
Drosophila Proteins/metabolism , Drosophila melanogaster/metabolism , Protein Serine-Threonine Kinases/metabolism , Signal Transduction , Wings, Animal/growth & development , Animals , Cadherins/metabolism , Cell Adhesion Molecules/metabolism , Drosophila melanogaster/genetics , Drosophila melanogaster/growth & development
3.
J Mol Biol ; 372(1): 37-49, 2007 Sep 07.
Article in English | MEDLINE | ID: mdl-17628594

ABSTRACT

Septin filaments form ordered hourglass and ring-shaped structures in close apposition to the yeast bud-neck membrane. The septin hourglass scaffolds the asymmetric localization of many essential cell division proteins. However, it is unknown whether the septin structures have an overall polarity along the mother-daughter axis that determines the asymmetric protein localization. Here we engineered rigid septin- green fluorescent protein (GFP) fusions with various fluorescence dipole directions by changing the position of the GFP beta-barrel relative to the septin filament axis. We then used polarized fluorescence microscopy to detect potential asymmetries in the filament organization. We found that both the hourglass and ring filament assemblies have sub-resolution C(2) symmetry and lack net polarity along the mother-daughter axis. The hourglass filaments have an additional degree of symmetry relative to the ring filaments, most likely due to a twist in their higher-order structure. We previously reported that during the hourglass to rings transition septin filaments change their direction. Here we show that the filaments also undergo a change in their lateral organization, consistent with filament untwisting. The lack of net septin polarity along the mother-daughter axis suggests that there are no septin-based structural reasons for the observed asymmetry of other proteins. We discuss possible anisotropic processes that could break the septin symmetry and establish the essential bud-neck asymmetry.


Subject(s)
Cell Cycle Proteins/chemistry , Cytoskeletal Proteins/chemistry , Profilins/chemistry , Protein Structure, Quaternary , Saccharomyces cerevisiae Proteins/chemistry , Amino Acid Sequence , Cell Division/physiology , Green Fluorescent Proteins/chemistry , Models, Biological , Molecular Sequence Data , Recombinant Fusion Proteins/chemistry , Saccharomyces cerevisiae , Sequence Homology, Amino Acid
4.
Nature ; 443(7110): 466-9, 2006 Sep 28.
Article in English | MEDLINE | ID: mdl-17006515

ABSTRACT

Septins are polymerizing GTPases that function in cortical organization and cell division. In Saccharomyces cerevisiae they localize at the isthmus between the mother and the daughter cells, where they undergo a transition from a non-dynamic hourglass-shaped assembly to two separate rings, at the onset of cytokinesis. Septins form filaments as pure protein and in vivo, but the filament organization within the hourglass and ring structures is controversial. Here, we use polarized fluorescence microscopy of orientationally constrained green fluorescent protein to determine septin filament organization and dynamics in living yeast. We found that the hourglass is made of filaments aligned along the yeast bud neck. During the transition from hourglass to rings the filaments rotate through 90 degrees in the membrane plane and become circumferential. These data resolve a long-standing controversy in the field and provide strong evidence that septins have a mechanical function in cell division.


Subject(s)
Cytoskeletal Proteins/metabolism , Saccharomyces cerevisiae/chemistry , Saccharomyces cerevisiae/cytology , Cell Cycle Proteins/chemistry , Cell Cycle Proteins/metabolism , Cytoskeletal Proteins/chemistry , Fluorescence , Fluorescence Polarization , Microscopy, Fluorescence , Profilins/chemistry , Profilins/metabolism , Saccharomyces cerevisiae Proteins/chemistry , Saccharomyces cerevisiae Proteins/metabolism
5.
J Biol Chem ; 279(4): 3111-8, 2004 Jan 23.
Article in English | MEDLINE | ID: mdl-14597621

ABSTRACT

We show here that affinity-purified Saccharomyces cerevisiae septin complexes contain stoichiometric amounts of guanine nucleotides, specifically GTP and GDP. Using a (15)N-dilution assay read-out by liquid chromatography-tandem mass spectrometry, we determined that the majority of the bound guanine nucleotides do not turn over in vivo during one cell cycle period. In vitro, the isolated S. cerevisiae septin complexes have similar GTP binding and hydrolytic properties to the Drosophila septin complexes (Field, C. M., al-Awar, O., Rosenblatt, J., Wong, M. L., Alberts, B., and Mitchison, T. J. (1996) J. Cell Biol. 133, 605-616). In particular, the GTP turnover of septins is very slow when compared with the GTP turnover for Ras-like GTPases. We conclude that bound GTP and GDP play a structural, rather then regulatory, role for the majority of septins in proliferating cells as GTP does for alpha-tubulin.


Subject(s)
GTP Phosphohydrolases/metabolism , Guanine Nucleotides/metabolism , Saccharomyces cerevisiae/metabolism , Guanosine Diphosphate/metabolism , Guanosine Triphosphate/metabolism , Saccharomyces cerevisiae Proteins/metabolism
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