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1.
Leukemia ; 38(6): 1323-1333, 2024 Jun.
Article in English | MEDLINE | ID: mdl-38493239

ABSTRACT

Extramedullary multiple myeloma (EMM) is an aggressive form of multiple myeloma (MM). This study represents the most comprehensive next-generation sequencing analysis of EMM tumors (N = 14) to date, uncovering key molecular features and describing the tumor microenvironment. We observed the co-occurrence of 1q21 gain/amplification and MAPK pathway mutations in 79% of EMM samples, suggesting that these are crucial mutational events in EMM development. We also demonstrated that patients with mutated KRAS and 1q21 gain/amplification at the time of diagnosis have a significantly higher risk of EMM development (HR = 2.4, p = 0.011) using data from a large CoMMpass dataset. We identified downregulation of CXCR4 and enhanced cell proliferation, along with reduced expression of therapeutic targets (CD38, SLAMF7, GPRC5D, FCRH5), potentially explaining diminished efficacy of immunotherapy. Conversely, we identified significantly upregulated EZH2 and CD70 as potential future therapeutic options. For the first time, we report on the tumor microenvironment of EMM, revealing CD8+ T cells and NK cells as predominant immune effector cells using single-cell sequencing. Finally, this is the first longitudinal study in EMM revealing the molecular changes from the time of diagnosis to EMM relapse.


Subject(s)
High-Throughput Nucleotide Sequencing , Multiple Myeloma , Tumor Microenvironment , Humans , Multiple Myeloma/genetics , Multiple Myeloma/pathology , Tumor Microenvironment/genetics , Mutation , Biomarkers, Tumor/genetics , Male , Female , Middle Aged , Aged , Bone Marrow/pathology , Prognosis
2.
Curr Rheumatol Rep ; 22(10): 62, 2020 08 26.
Article in English | MEDLINE | ID: mdl-32845403

ABSTRACT

PURPOSE OF REVIEW: To summarize recent findings and progression in the field of imaging of inflammatory myopathies. The most commonly used method is magnetic resonance imaging, and the article focuses on this technique, but covers also several other less frequently used or emerging methods. RECENT FINDINGS: A relatively good agreement exists regarding some technical parameters, area of investigation, and assessment of inflammatory activity and chronic damage using magnetic resonance imaging. There are inconsistent data available with respect to distribution of involvement in individual IIM subtypes. Ultrasound and other imaging methods lack the validation and still face many unresolved problems. Imaging plays a crucial role in the evaluation of impairment in patients with IIMs. The future research should be focused on standardization of each method in order to obtain comparable results and on defining the most appropriate indications of their use.


Subject(s)
Myositis , Humans , Magnetic Resonance Imaging , Myositis/diagnostic imaging
3.
MethodsX ; 6: 534-539, 2019.
Article in English | MEDLINE | ID: mdl-30963033

ABSTRACT

We propose a complex 4-point method for characterization of flow batteries. The distribution of ohmic and faradaic losses within a single-cell is evaluated from electrochemical impedance spectra and load curves of positive and negative half-cells measured with platinum wire pseudo-reference electrodes positioned in respective electrode compartment. The developed method can be used e.g., for the component screening and in-situ durability studies on single-cell scale. The method was validated on a vanadium redox flow battery single-cell; however, it can be analogically employed for various chemistries of flow battery. •Complex 4-point method for characterization of flow battery single-cell was developed.•Method is based on electrochemical impedance spectra and load curve measurements.•Direct evaluation of ohmic and faradaic losses distribution within battery single-cell by the method.

4.
Acta Neurochir (Wien) ; 151(6): 669-75, 2009 Jun.
Article in English | MEDLINE | ID: mdl-19350204

ABSTRACT

PURPOSE: Our aim was to determine whether the anatomical configuration of the posterior fossa and its substructures might represent a predisposition factor for the occurrence of clinical neurovascular conflict in trigeminal neuralgia (TN). METHODS: We used MRI volumetry in 18 patients with TN and 15 controls. The volume of the pontomesencephalic cistern, Meckel's cave and the trigeminal nerve on the clinical and non-affected sides was compared. The reliability has been assessed in all measurements. RESULTS: The posterior fossa volume was not different in the clinical and control groups; there was no difference between the affected and non-affected sides when measuring the pontomesencephalic cistern and Meckel's cave volume either. The volume of the clinically affected trigeminal nerve was significantly reduced, but with a higher error of measurement. CONCLUSIONS: We did not find any association between the clinical neurovascular conflict (NVC) and the size of the posterior fossa and its substructures. MRI volumetry may show the atrophy of the affected trigeminal nerve in clinical NVC.


Subject(s)
Cranial Fossa, Posterior/abnormalities , Cranial Fossa, Posterior/pathology , Image Processing, Computer-Assisted/methods , Magnetic Resonance Imaging/methods , Trigeminal Neuralgia/etiology , Trigeminal Neuralgia/pathology , Adult , Aged , Anthropometry/methods , Atrophy/etiology , Atrophy/pathology , Atrophy/physiopathology , Basilar Artery/pathology , Basilar Artery/physiopathology , Causality , Cranial Fossa, Middle/abnormalities , Cranial Fossa, Middle/pathology , Female , Humans , Male , Middle Aged , Predictive Value of Tests , Trigeminal Nerve/pathology , Trigeminal Neuralgia/physiopathology
5.
Leukemia ; 22(6): 1139-43, 2008 Jun.
Article in English | MEDLINE | ID: mdl-18401419

ABSTRACT

Peripheral T-cell lymphomas (PTCLs) are fatal in the majority of patients and novel treatments, such as protein tyrosine kinase (PTK) inhibition, are needed. The recent finding of SYK/ITK translocations in rare PTCLs led us to examine the expression of Syk PTK in 141 PTCLs. Syk was positive by immunohistochemistry (IHC) in 133 PTCLs (94%), whereas normal T cells were negative. Western blot on frozen tissue (n=6) and flow cytometry on cell suspensions (n=4) correlated with IHC results in paraffin. Additionally, western blot demonstrated that Syk-positive PTCLs show tyrosine (525/526) phosphorylation, known to be required for Syk activation. Fluorescence in situ hybridization showed no SYK/ITK translocation in 86 cases. Overexpression of Syk, phosphorylation of its Y525/526 residues and the availability of orally available Syk inhibitors suggest that Syk merits further evaluation as a candidate target for pharmacologic PTK inhibition in patients with PTCL.


Subject(s)
Intracellular Signaling Peptides and Proteins/metabolism , Lymphoma, T-Cell, Peripheral/enzymology , Protein-Tyrosine Kinases/metabolism , Adolescent , Adult , Aged , Aged, 80 and over , Blotting, Western , Child , Child, Preschool , Chromosomes, Human, Pair 5/genetics , Chromosomes, Human, Pair 9/genetics , Female , Flow Cytometry , Humans , Immunoenzyme Techniques , Immunophenotyping , In Situ Hybridization, Fluorescence , Intracellular Signaling Peptides and Proteins/genetics , Lymphoma, Extranodal NK-T-Cell/enzymology , Lymphoma, Extranodal NK-T-Cell/genetics , Lymphoma, Extranodal NK-T-Cell/pathology , Lymphoma, Large-Cell, Anaplastic/enzymology , Lymphoma, Large-Cell, Anaplastic/genetics , Lymphoma, Large-Cell, Anaplastic/pathology , Lymphoma, T-Cell, Cutaneous/enzymology , Lymphoma, T-Cell, Cutaneous/genetics , Lymphoma, T-Cell, Cutaneous/pathology , Lymphoma, T-Cell, Peripheral/genetics , Lymphoma, T-Cell, Peripheral/pathology , Male , Middle Aged , Phosphorylation , Protein-Tyrosine Kinases/genetics , Syk Kinase , Translocation, Genetic , Tyrosine/metabolism
6.
Neuroscience ; 147(3): 842-52, 2007 Jul 13.
Article in English | MEDLINE | ID: mdl-17560045

ABSTRACT

Warmth and heat are registered by different types of cutaneous receptors. To disentangle the cortical activation patterns of warming and heating, we analyzed the temporal evolution of the electroencephalographic 10 and 20 Hz oscillations with the time resolution of hundreds of milliseconds. Sixty heat (from 32 to 50.5 degrees C, rate of change 6 degrees C/s) and warm (from 32 to 42 degrees C, 6 degrees C/s) stimuli were applied on the right thenar using contact thermode. EEG was recorded from 111 scalp electrodes in 12 healthy subjects, and analyzed using event-related desynchronization and low-resolution electromagnetic tomography methods. During warming, the amplitudes of 10 and 20 Hz oscillations over the contralateral primary sensorimotor (SI/MI) and premotor cortices decreased, and the amplitude of 20 Hz oscillations in the anterior cingulate and ipsilateral premotor cortex increased. Heating was associated with additional profound amplitude decreases of 10 and 20 Hz oscillations over SI/MI and premotor cortex, and by amplitude increase of 20 Hz oscillations originating in the posterior cingulate cortex. Results suggest biphasic amplitude changes of the cortical oscillations during ramp increase of temperature attributable to the periods of warming and heating. The amplitude decreases of 10 and 20 Hz oscillations in SI/MI and premotor cortex possibly aid in preparation of motor withdrawal reaction in an event that temperature should reach intolerable pain. Synchronization of the 20 Hz oscillations in the anterior and especially in the posterior cingulate cortex may aid suppression of unwanted movements.


Subject(s)
Body Temperature Regulation , Brain Mapping , Cortical Synchronization , Motor Cortex/radiation effects , Somatosensory Cortex/radiation effects , Adult , Analysis of Variance , Electroencephalography/methods , Evoked Potentials/physiology , Evoked Potentials/radiation effects , Humans , Male , Motor Cortex/physiology , Pain Measurement , Reaction Time/physiology , Reaction Time/radiation effects , Sensory Thresholds , Somatosensory Cortex/physiology
7.
Soud Lek ; 51(3): 42-6, 2006 Jul.
Article in Czech | MEDLINE | ID: mdl-16948447

ABSTRACT

Scanning electron microscope improves the possibility of investigation of surroundings near of gunshot wounds in forensic medicine, it is the next subsequent method for differentiating of area of entrance and exit wound, supplemental method for determination of firing distance, permit of detection (GSR) on the hand of shooter and ensured describing of samples and their stored. Detection of GSR provides many information about composition of bullet and primer. Authors are demonstrating the possibility of detection of GSR on experimental shooting to the krupon (pigs' skin) in different situation (such as in a room and in outside area) and using of different weapon (hand gun CZ No.75 and machine gun No.58).


Subject(s)
Craniocerebral Trauma/pathology , Forensic Ballistics , Microscopy, Electron, Scanning , Wounds, Gunshot/pathology , Animals , Forensic Pathology , Humans , Phantoms, Imaging , Swine
8.
Genome ; 46(5): 893-905, 2003 Oct.
Article in English | MEDLINE | ID: mdl-14608406

ABSTRACT

Procedures for chromosome analysis and sorting using flow cytometry (flow cytogenetics) were developed for rye (Secale cereale L.). Suspensions of intact chromosomes were prepared by mechanical homogenization of synchronized root tips after mild fixation with formaldehyde. Histograms of relative fluorescence intensity obtained after the analysis of DAPI-stained chromosomes (flow karyotypes) were characterized and the chromosome content of the DNA peaks was determined. Chromosome 1R could be discriminated on a flow karyotype of S. cereale 'Imperial'. The remaining rye chromosomes (2R-7R) could be discriminated and sorted from individual wheat-rye addition lines. The analysis of lines with reconstructed karyotypes demonstrated a possibility of sorting translocation chromosomes. Supernumerary B chromosomes could be sorted from an experimental rye population and from S. cereale 'Adams'. Flow-sorted chromosomes were identified by fluorescence in situ hybridization (FISH) with probes for various DNA repeats. Large numbers of chromosomes of a single type sorted onto microscopic slides facilitated detection of rarely occurring chromosome variants by FISH with specific probes. PCR with chromosome-specific primers confirmed the identity of sorted fractions and indicated suitability of sorted chromosomes for physical mapping. The possibility to sort large numbers of chromosomes opens a way for the construction of large-insert chromosome-specific DNA libraries in rye.


Subject(s)
Chromosomes, Plant/genetics , Flow Cytometry/methods , Secale/genetics , Cell Separation/methods , In Situ Hybridization, Fluorescence , Karyotyping , Microsatellite Repeats , Physical Chromosome Mapping , Polymerase Chain Reaction , Translocation, Genetic
9.
Theor Appl Genet ; 104(8): 1362-1372, 2002 Jun.
Article in English | MEDLINE | ID: mdl-12582592

ABSTRACT

Previously, we reported on the development of procedures for chromosome analysis and sorting using flow cytometry (flow cytogenetics) in bread wheat. That study indicated the possibility of sorting large quantities of intact chromosomes, and their suitability for analysis at the molecular level. However, due to the lack of sufficient differences in size between individual chromosomes, only chromosome 3B could be sorted into a high-purity fraction. The present study aimed to identify wheat stocks that could be used to sort other chromosomes. An analysis of 58 varieties and landraces demonstrated a remarkable reproducibility and sensitivity of flow cytometry for the detection of numerical and structural chromosome changes. Changes in flow karyotype, diagnostic for the presence of the 1BL.1RS translocation, have been found and lines from which translocation chromosomes 5BL.7BL and 4AL.4AS-5BL could be sorted have been identified. Furthermore, wheat lines have been identified which can be used for sorting chromosomes 4B, 4D, 5D and 6D. The ability to sort any single arm of the hexaploid wheat karyotype, either in the form of a ditelosome or a isochromosome, has also been demonstrated. Thus, although originally considered recalcitrant, wheat seems to be suitable for the development of flow cytogenetics and the technology can be applied to the physical mapping of DNA sequences, the targeted isolation of molecular makers and the construction of chromosome- and arm-specific DNA libraries. These approaches should facilitate the analysis of the complex genome of hexaploid bread wheat.

10.
Chromosome Res ; 10(8): 695-706, 2002.
Article in English | MEDLINE | ID: mdl-12575797

ABSTRACT

Procedures for flow cytometric analysis and sorting of mitotic chromosomes (flow cytogenetics) have been developed for chickpea (Cicer arietinum). Suspensions of intact chromosomes were prepared from root tips treated to achieve a high degree of metaphase synchrony. The optimal protocol consisted of a treatment of roots with 2 mmol/L hydroxyurea for 18 h, a 4.5-h recovery in hydroxyurea-free medium, 2 h incubation with 10 micromol/L oryzalin, and ice-water treatment overnight. This procedure resulted in an average metaphase index of 47%. Synchronized root tips were fixed in 2% formaldehyde for 20 min, and chromosome suspensions prepared by mechanical homogenization of fixed root tips. More than 4 x 10(5) morphologically intact chromosomes could be isolated from 15 root tips. Flow cytometric analysis of DAPI-stained chromosomes resulted in histograms of relative fluorescence intensity (flow karyotypes) containing eight peaks, representing individual chromosomes and/or groups of chromosomes with a similar relative DNA content. Five peaks could be assigned to individual chromosomes (A, B, C, G, H). The parity of sorted chromosome fractions was high, and chromosomes B and H could be sorted with 100% purity. PCR on flow-sorted chromosome fractions with primers for sequence-tagged microsatellite site (STMS) markers permitted assignment of the genetic linkage group LG8 to the smallest chickpea chromosome H. This study extends the number of legume species for which flow cytogenetics is available, and demonstrates the potential of flow cytogenetics for genome mapping in chickpea.


Subject(s)
Chromosomes, Plant/genetics , Cicer/genetics , Genome, Plant , Physical Chromosome Mapping/methods , Cell Cycle , Cytogenetics , DNA, Plant/genetics , DNA, Plant/metabolism , Flow Cytometry/methods , Genetic Linkage , In Situ Hybridization, Fluorescence , Indoles , Karyotyping , Metaphase , Microsatellite Repeats , Mitosis , Plant Roots/genetics , Polymerase Chain Reaction , Sequence Tagged Sites
11.
Methods Cell Sci ; 23(1-3): 71-82, 2001.
Article in English | MEDLINE | ID: mdl-11741145

ABSTRACT

Localisation of DNA sequences to plant chromosomes in situ has traditionally been accomplished using fluorescence in situ hybridisation (FISH). Although the method is suitable for most applications it is time-consuming and requires labelled probes. Recently, primed in situ labelling (PRINS) has been developed as an alternative to FISH. PRINS is based on annealing of unlabelled oligonucleotide primer(s) to chromosome DNA and its elongation by DNA polymerase in the presence of labelled nucleotide(s). The method was found useful to detect high-copy tandem repeats on plant chromosomes. Low copy repeats were detected after a more sensitive variant of PRINS called cycling PRINS (C-PRINS), which involves a sequence of thermal cycles analogous to polymerase chain reaction. This paper describes protocols of PRINS and C-PRINS, which have been optimised for chromosome spreads and for chromosomes purified using gradient centrifugation and/or flow sorting. The methods result in clear signals with negligible non-specific labelling. Further work is needed to improve the sensitivity to allow for reliable detection of single- copy DNA sequences.


Subject(s)
DNA, Plant/genetics , Magnoliopsida/genetics , Primed In Situ Labeling/methods , Fabaceae/genetics , Hordeum/genetics , Microsatellite Repeats , Reproducibility of Results , Sensitivity and Specificity , Telomere/genetics , Triticum/genetics
12.
Genetics ; 158(3): 1269-77, 2001 Jul.
Article in English | MEDLINE | ID: mdl-11454773

ABSTRACT

The dioecious white campion Silene latifolia (syn. Melandrium album) has heteromorphic sex chromosomes, XX in females and XY in males, that are larger than the autosomes and enable their separation by flow sorting. The group of MROS genes, the first male-specifically expressed genes in dioecious plants, was recently identified in S. latifolia. To localize the MROS genes, we used the flow-sorted X chromosomes and autosomes as a template for PCR with internal primers. Our results indicate that the MROS3 gene is located in at least two copies tandemly arranged on the X chromosome with additional copy(ies) on the autosome(s), while MROS1, MROS2, and MROS4 are exclusively autosomal. The specificity of PCR products was checked by digestion with a restriction enzyme or reamplification using nested primers. Homology search of databases has shown the presence of five MROS3 homologues in A. thaliana, four of them arranged in two tandems, each consisting of two copies. We conclude that MROS3 is a low-copy gene family, connected with the proper pollen development, which is present not only in dioecious but also in other dicot plant species.


Subject(s)
Genes, Plant , Magnoliopsida/genetics , Plant Proteins/genetics , Sex Chromosomes , Amino Acid Sequence , Base Sequence , DNA Primers , In Situ Hybridization, Fluorescence , Molecular Sequence Data , Plant Proteins/chemistry , Polymerase Chain Reaction , Sequence Homology, Amino Acid
13.
Blood ; 97(7): 2105-14, 2001 Apr 01.
Article in English | MEDLINE | ID: mdl-11264178

ABSTRACT

Cotreatment with a minimally toxic concentration of the protein kinase C (PKC) activator (and down-regulator) bryostatin 1 (BRY) induced a marked increase in mitochondrial dysfunction and apoptosis in U937 monocytic leukemia cells exposed to the proteasome inhibitor lactacystin (LC). This effect was blocked by cycloheximide, but not by alpha-amanitin or actinomycin D. Qualitatively similar interactions were observed with other PKC activators (eg, phorbol 12-myristate 13-acetate and mezerein), but not phospholipase C, which does not down-regulate the enzyme. These events were examined in relationship to functional alterations in stress (eg, SAPK, JNK) and survival (eg, MAPK, ERK) signaling pathways. The observations that LC/BRY treatment failed to trigger JNK activation and that cell death was unaffected by a dominant-interfering form of c-JUN (TAM67) or by pretreatment with either curcumin or the p38/RK inhibitor, SB203580, suggested that the SAPK pathway was not involved in potentiation of apoptosis. In marked contrast, perturbations in the PKC/Raf/MAPK pathway played an integral role in LC/BRY-mediated cell death based on evidence that pretreatment of cells with bisindolylmaleimide I, a selective PKC inhibitor, or geldanamycin, a benzoquinone ansamycin, which destabilizes and depletes Raf-1, markedly suppressed apoptosis. Furthermore, ERK phosphorylation was substantially prolonged in LC/BRY-treated cells compared to those exposed to BRY alone, and pretreatment with the highly specific MEK inhibitors, PD98059, U0126, and SL327, opposed ERK activation while protecting cells from LC/BRY-induced lethality. Together, these findings suggest a role for activation and/or dysregulation of the PKC/MAPK cascade in modulation of leukemic cell apoptosis following exposure to the proteasome inhibitor LC. (Blood. 2001;97:2105-2114)


Subject(s)
Acetylcysteine/analogs & derivatives , Acetylcysteine/pharmacology , Apoptosis/drug effects , Diterpenes , JNK Mitogen-Activated Protein Kinases , Lactones/pharmacology , MAP Kinase Signaling System/physiology , Multienzyme Complexes/antagonists & inhibitors , Neoplasm Proteins/antagonists & inhibitors , Protease Inhibitors/pharmacology , Protein Kinase C/physiology , U937 Cells/drug effects , Amanitins/pharmacology , Aminoacetonitrile/analogs & derivatives , Benzoquinones , Bryostatins , Butadienes/pharmacology , Curcumin/pharmacology , Cysteine Endopeptidases , Dactinomycin/pharmacology , Drug Synergism , Enzyme Activation/drug effects , Flavonoids/pharmacology , Humans , Imidazoles/pharmacology , Indoles/pharmacology , Lactams, Macrocyclic , MAP Kinase Kinase 4 , MAP Kinase Signaling System/drug effects , Macrolides , Maleimides/pharmacology , Mitogen-Activated Protein Kinase 1/metabolism , Mitogen-Activated Protein Kinase 3 , Mitogen-Activated Protein Kinase Kinases/antagonists & inhibitors , Mitogen-Activated Protein Kinase Kinases/physiology , Mitogen-Activated Protein Kinases/antagonists & inhibitors , Mitogen-Activated Protein Kinases/metabolism , Mitogen-Activated Protein Kinases/physiology , Neoplasm Proteins/metabolism , Nitriles/pharmacology , Nucleic Acid Synthesis Inhibitors/pharmacology , Proteasome Endopeptidase Complex , Protein Kinase C/antagonists & inhibitors , Protein Synthesis Inhibitors/pharmacology , Proto-Oncogene Proteins c-raf/metabolism , Pyridines/pharmacology , Quinones/pharmacology , Terpenes/pharmacology , Tetradecanoylphorbol Acetate/pharmacology , Transcription Factor AP-1/physiology , Type C Phospholipases/pharmacology , U937 Cells/enzymology , Ubiquitins/metabolism , p38 Mitogen-Activated Protein Kinases
14.
Genetics ; 156(4): 2033-41, 2000 Dec.
Article in English | MEDLINE | ID: mdl-11102393

ABSTRACT

The aim of this study was to develop an improved procedure for preparation of chromosome suspensions, and to evaluate the potential of flow cytometry for chromosome sorting in wheat. Suspensions of intact chromosomes were prepared by mechanical homogenization of synchronized root tips after mild fixation with formaldehyde. Histograms of relative fluorescence intensity (flow karyotypes) obtained after the analysis of DAPI-stained chromosomes were characterized and the chromosome content of all peaks on wheat flow karyotype was determined for the first time. Only chromosome 3B could be discriminated on flow karyotypes of wheat lines with standard karyotype. Remaining chromosomes formed three composite peaks and could be sorted only as groups. Chromosome 3B could be sorted at purity >95% as determined by microscopic evaluation of sorted fractions that were labeled using C-PRINS with primers for GAA microsatellites and for Afa repeats, respectively. Chromosome 5BL/7BL could be sorted in two wheat cultivars at similar purity, indicating a potential of various wheat stocks for sorting of other chromosome types. PCR with chromosome-specific primers confirmed the identity of sorted fractions and suitability of flow-sorted chromosomes for physical mapping and for construction of small-insert DNA libraries. Sorted chromosomes were also found suitable for the preparation of high-molecular-weight DNA. On the basis of these results, it seems realistic to propose construction of large-insert chromosome-specific DNA libraries in wheat. The availability of such libraries would greatly simplify the analysis of the complex wheat genome.


Subject(s)
Cell Fractionation/methods , Chromosomes , Flow Cytometry , Karyotyping/methods , Triticum/genetics , Cell Cycle , Chromosomes/classification , Chromosomes/genetics , DNA, Plant/genetics , Electrophoresis, Gel, Pulsed-Field , Gene Library , Microscopy, Fluorescence , Mitosis , Plant Roots/ultrastructure , Polymerase Chain Reaction , Triticum/ultrastructure
15.
Cytometry ; 41(2): 102-8, 2000 Oct 01.
Article in English | MEDLINE | ID: mdl-11002265

ABSTRACT

BACKGROUND: Flow-sorted plant chromosomes are being increasingly used in plant genome analysis and mapping. Consequently, there is a need for a rapid method for identification of sorted chromosomes and for determination of their purity. We report on optimization of procedures for primed in situ DNA labeling (PRINS) and cycling-PRINS (C-PRINS) for fluorescent labeling of repetitive DNA sequences on sorted plant chromosomes suitable for their identification. METHODS: Chromosomes of barley, wheat, and field bean were sorted onto microscope slides, dried, and subjected to PRINS or C-PRINS with primers for GAA microsatellites (barley and wheat) or FokI repeat (field bean). The following parameters were optimized to achieve the highest specificity and intensity of fluorescent labeling: ratio of labeled versus unlabeled nucleotides, nucleotide concentration, and the number and concentration of primers. RESULTS: Under optimal conditions, C-PRINS resulted in strong and specific labeling of GAA microsatellites on sorted barley and wheat chromosomes and FokI repeats on sorted field bean chromosomes. The labeling patterns were characteristic for each chromosome and permitted their unequivocal identification as well as determination of purity after sorting, which ranged from 96% to 99%. A standard polymerase chain reaction (PCR) with chromosome-specific primers was not sensitive enough to detect low-frequency contamination. CONCLUSIONS: The results indicate that a single C-PRINS assay with primers that give chromosome-specific labeling pattern is sufficient not only to determine chromosome content of peaks on flow karyotype but also to determine the purity of sorted chromosome fractions. The whole procedure can be performed in less than 3 h on the next day after sorting. Numerous applications are expected in the area of plant flow cytogenetics.


Subject(s)
Chromosomes/genetics , Flow Cytometry , Primed In Situ Labeling/methods , DNA Primers/genetics , DNA, Plant/analysis , Fabaceae/genetics , Genome, Plant , Hordeum/genetics , Karyotyping , Microsatellite Repeats , Microscopy, Fluorescence , Plants, Medicinal , Polymerase Chain Reaction , Triticum/genetics
16.
J Biol Chem ; 275(20): 15384-91, 2000 May 19.
Article in English | MEDLINE | ID: mdl-10748152

ABSTRACT

Stimulation of quiescent AKR-2B mouse fibroblasts with transforming growth factor beta1 results in uniform conversion to a myofibroblast-like phenotype as judged by a rapid accumulation of smooth muscle alpha-actin mRNA and protein. Because transcriptional regulation of the smooth muscle alpha-actin gene in these cells might be mediated by single-stranded DNA-binding proteins, we have examined the sensitivity of genomic DNA to chemical reagents with specificity for unpaired bases in a region of the promoter previously implicated in Puralpha, Purbeta, and MSY1 binding in vitro (Kelm, R. J., Jr., Cogan, J. G., Elder, P. K., Strauch, A. R., and Getz, M. J. (1999) J. Biol. Chem. 274, 14238-14245). Our data reveal specific differences between purified DNA treated in vitro and nucleoprotein complexes treated in living cells. Although some differences were observed in quiescent cells, treatment with transforming growth factor beta1 resulted in the development of additional sensitivity within 1 h. This enhancement was most pronounced in bases immediately upstream of an MCAT enhancer element-containing polypurine-polypyrimidine tract. A TATA-proximal element of similar base distribution showed no such hyperreactivities. These results suggest that activation of the endogenous smooth muscle alpha-actin gene during myofibroblast conversion is accompanied by specific structural changes in the promoter that are consistent with a decline in single-stranded DNA repressor protein binding.


Subject(s)
Actins/genetics , DNA, Single-Stranded/drug effects , Fibroblasts/drug effects , Muscle, Smooth, Vascular/metabolism , Promoter Regions, Genetic , Transforming Growth Factor beta/pharmacology , Animals , Base Sequence , Becaplermin , Cell Differentiation/drug effects , Enhancer Elements, Genetic , Epidermal Growth Factor/pharmacology , Fibroblasts/cytology , Fibroblasts/metabolism , Insulin/pharmacology , Kinetics , Mice , Molecular Sequence Data , Platelet-Derived Growth Factor/pharmacology , Proto-Oncogene Proteins c-sis , TATA Box
17.
Int J Oncol ; 16(2): 413-22, 2000 Feb.
Article in English | MEDLINE | ID: mdl-10639586

ABSTRACT

The ability of low dose ionizing radiation (2 Gy) to modulate the activities of the mitogen activated protein kinase (MAPK) and c-Jun NH2-terminal kinase (JNK1) cascades in human monocytic leukemia (U937/pREP4) cells and in cells over-expressing dominant negative c-Jun (TAM67) (U937/TAM67) was investigated. Radiation exposure caused prolonged ( approximately 1 h) MAPK activations in U937 cells. In contrast, low dose irradiation weakly modulated JNK1 activity in these cells. Inhibition of the MAPK pathway by use of the specific MEK1/2 inhibitor (10 microM PD98059) in both U937/pREP4 and U937/TAM67 cells prior to radiation exposure permitted strong prolonged radiation-induced activations of JNK1. Expression of TAM67 decreased the ability of radiation to cause apoptosis compared to control transfected cells. However, combined MEK1/2 inhibition and radiation exposure in both cell types caused a large decrease in suspension culture growth and a large increase in apoptosis, when compared to either treatment alone. Reduced proliferation after combined irradiation and PD98059 treatment in both cell types correlated with prolonged cell cycle arrest in G2/M phase. Prolonged growth arrest was abolished when MEK1/2 inhibitor was removed 6 h following irradiation, which was associated with a reduction in apoptosis. The ability of MEK1/2 inhibition to cause prolonged G2/M growth arrest was reduced in U937 cells stably transfected with a p21Cip-1/WAF1 antisense construct (U937/p21AS). This data correlated with an enhancement of radiation-induced apoptosis and a reduced ability of MEK1/2 inhibition to potentiate apoptosis. Collectively our data demonstrate that inhibition of MEK1/2 function increases the radiation sensitivity of U937 cells, independently of c-Jun function, and decreases the ability of these cells to recover from the radiation-induced G2/M cell cycle checkpoint arrest. In addition, our data also demonstrate that the ability of MEK1/2 inhibition to potentiate radiation-induced cell death in U937 cells in part requires an ability of cells to express low levels of p21Cip-1/WAF1.


Subject(s)
Apoptosis/radiation effects , G2 Phase/radiation effects , Mitogen-Activated Protein Kinase Kinases/radiation effects , Mitogen-Activated Protein Kinases/radiation effects , Mitosis/radiation effects , Apoptosis/physiology , Cell Cycle/physiology , Cell Cycle/radiation effects , G2 Phase/physiology , Humans , JNK Mitogen-Activated Protein Kinases , Leukemia, Myeloid/metabolism , Mitogen-Activated Protein Kinase Kinases/metabolism , Mitogen-Activated Protein Kinases/metabolism , Mitosis/physiology , U937 Cells/radiation effects
18.
Oncogene ; 18(50): 7016-25, 1999 Nov 25.
Article in English | MEDLINE | ID: mdl-10597302

ABSTRACT

Determinants of differentiation and apoptosis in myelomonocytic leukemia cells (U937) exposed to the novel hybrid polar compound SAHA (suberoylanilide hydroxamic acid) have been examined. In contrast to hexamethylenbisacetamide (HMBA), SAHA-related maturation was limited and accompanied by marked cytoxicity. SAHA-mediated apoptosis occurred within the G0G1 and S phase populations, and was associated with decreased mitochondrial membrane potential, caspase-3 activation, PARP degradation, hypophosphorylation/cleavage of pRB, and down-regulation of c-Myc, c-Myb, and B-Myb. Enforced expression of Bcl-2 or Bcl-XL inhibited SAHA-induced apoptosis, but only modestly potentiated differentiation. While SAHA induced the cyclin-dependent kinase inhibitor p21CIP1, antisense ablation of this CDKI increased, rather than decreased, SAHA-related lethality. In contrast, conditional expression of wild-type p53 failed to modify SAHA actions, but markedly potentiated HMBA-induced apoptosis. Finally, SAHA modestly increased expression/activation of the stress-activated protein kinase (SAPK/JNK); moreover, SAHA-related lethality was partially attenuated by a dominant-negative c-Jun mutant protein (TAM67). SAHA did not stimulate mitogen-activated protein kinase (MAPK), nor was lethality diminished by the specific MEK/MAPK inhibitor PD98059. These findings indicate that SAHA potently induces apoptosis in human leukemia cells via a pathway that is p53-independent but at least partially regulated by Bcl-2/Bcl-XL, p21CIP1, and the c-Jun/AP-1 signaling cascade.


Subject(s)
Apoptosis/drug effects , Cyclins/metabolism , Hydroxamic Acids/pharmacology , Proto-Oncogene Proteins c-bcl-2/metabolism , Proto-Oncogene Proteins c-jun/metabolism , Cyclin-Dependent Kinase Inhibitor p21 , Down-Regulation , Humans , Leukemia/metabolism , Leukemia/pathology , Proto-Oncogene Proteins c-myb/metabolism , Proto-Oncogene Proteins c-myc/metabolism , Tumor Suppressor Protein p53/metabolism , U937 Cells , Vorinostat , bcl-X Protein
19.
Leukemia ; 13(7): 1046-55, 1999 Jul.
Article in English | MEDLINE | ID: mdl-10400420

ABSTRACT

We have examined interactions between the purine nucleoside analog fludarabine (9-beta-arabinofuranosyl-2-fluoroadenine) and the macrocyclic lactone bryostatin 1 in the human monocytic leukemic cell line U937. Fludarabine exerted dose-dependent effects on U937 cell viability and growth which were associated with both induction of apoptosis, as well as cellular maturation. Incubation of cells with bryostatin 1 (10 nM; 24 h) after, but not before a 6-h exposure to 10 microM fludarabine resulted in a modest but significant increase in apoptosis, and was associated with greater than a 1 log reduction in clonogenicity. Subsequent exposure to bryostatin 1 also increased the percentage of fludarabine-treated cells displaying differentiation-related features (eg plastic adherence, CD11b positivity) compared to cells exposed to fludarabine alone. Bryostatin 1 did not increase the retention of the active fludarabine metabolite, F-ara-ATP, nor did it increase 3H-F-ara-A incorporation into DNA. Despite its capacity to trigger cellular maturation, fludarabine exposure (either with or without bryostatin 1) failed to induce the cyclin-dependent kinase inhibitors (CDKls) p21WAF1/CIP1 and p27KIP1. Nevertheless, dysregulation of p21 (resulting from stable transfection of cells with a p2lWAF1/CIP1 antisense construct) reduced fludarabine-mediated differentiation, while inducing a corresponding increase in apoptosis. Enforced expression of Bcl-2 partially protected cells from fludarabine-related apoptosis, an effect that was overcome, in part, by subsequent exposure of cells to bryostatin 1. Interestingly, Bcl-2-overexpressing cells were as or in some cases, more susceptible to differentiation induction by fludarabine (+/- bryostatin 1) than their empty vector-containing counterparts. Collectively, these results indicate that the antiproliferative effects of fludarabine toward U937 leukemic cells involve both induction of apoptosis and cellular maturation, and that each of these processes may be enhanced by bryostatin 1.


Subject(s)
Antineoplastic Agents/therapeutic use , Apoptosis/drug effects , Lactones/therapeutic use , Leukemia, Myelomonocytic, Acute/drug therapy , Vidarabine/analogs & derivatives , Bryostatins , Cell Differentiation/drug effects , Cell Division/drug effects , Drug Interactions , Drug Screening Assays, Antitumor , Humans , Macrolides , U937 Cells , Vidarabine/therapeutic use
20.
Biochem Pharmacol ; 58(1): 121-31, 1999 Jul 01.
Article in English | MEDLINE | ID: mdl-10403525

ABSTRACT

Events accompanying sequential exposure of U937 leukemic cells to the deoxycytidine (dCyd) analogs 1-[beta-D-arabinofuranosyl]cytosine (ara-C) or 2',2'-difluorodeoxycytidine (gemcitabine; dFdC) followed by two protein kinase C (PKC) activators [bryostatin 1 (BRY) or phorbol 12'-myristate 13'-acetate (PMA)] exhibiting disparate differentiation-inducing abilities were characterized. A 24-hr exposure to 10 nM BRY or PMA after a 6-hr incubation with 1 microM ara-C or 100 nM dFdC resulted in equivalent increases in apoptosis, caspase-3 activation, and polyADP-ribose polymerase degradation, as well as identical DNA cleavage patterns. BRY and PMA did not modify retention of the lethal ara-C metabolite ara-CTP or alter ara-CTP/dCTP ratios. Unexpectedly, pretreatment of cells with ara-C or dFdC opposed BRY- and PMA-related induction of the cyclin-dependent kinase inhibitors (CDKIs) p21CIP1 and/or p27KIP1. These effects were not mimicked by the DNA polymerase inhibitor aphidicolin or by VP-16, a potent inducer of apoptosis. Inhibition of PKC activator-induced CDKI expression by ara-C and dFdC did not lead to redistribution of proliferating cell nuclear antigen but was accompanied by sub-additive or antagonistic effects on leukemic cell differentiation. Sequential exposure of cells to ara-C followed by BRY or PMA led to substantial reductions in clonogenicity that could not be attributed solely to apoptosis. Finally, pretreatment of cells with ara-C attenuated PMA- and BRY-mediated activation of mitogen-activated protein kinase, an enzyme implicated in CDKI induction. Collectively, these findings suggest that pretreatment of leukemic cells with certain dCyd analogs interferes with CDKI induction by the PKC activators PMA and BRY, and that this action may contribute to modulation of apoptosis and differentiation in cells exposed sequentially to these agents.


Subject(s)
Cell Cycle Proteins , Cyclins/biosynthesis , Cytarabine/pharmacology , Deoxycytidine/analogs & derivatives , Lactones/pharmacology , Leukemia/metabolism , Microtubule-Associated Proteins/biosynthesis , Protein Kinase C/metabolism , Tetradecanoylphorbol Acetate/pharmacology , Tumor Suppressor Proteins , Antimetabolites, Antineoplastic/pharmacology , Apoptosis , Bryostatins , Cell Differentiation/drug effects , Cyclin-Dependent Kinase Inhibitor p21 , Cyclin-Dependent Kinase Inhibitor p27 , Deoxycytidine/pharmacology , Drug Interactions , Enzyme Activation , Humans , Lactones/antagonists & inhibitors , Leukemia/drug therapy , Leukemia/pathology , Macrolides , Mitogens/pharmacology , Tetradecanoylphorbol Acetate/antagonists & inhibitors , U937 Cells , Gemcitabine
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