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1.
Mycol Res ; 111(Pt 8): 909-18, 2007 Aug.
Article in English | MEDLINE | ID: mdl-17703933

ABSTRACT

The complete oat gene and cDNA from the commercial mushroom, Agaricus bisporus, encoding ornithine aminotransferase (OAT) was characterized. The gene encodes a 466 amino acid protein and provides the first fully reported homobasidiomycete OAT protein sequence. The gene is interrupted by ten introns, and no mitochondrial targeting motif was present pointing to a cytoplasmic localization. The function of the gene was demonstrated by complementation of a Saccharomyces cerevisiae mutant unable to utilize ornithine as a sole source of nitrogen with an A. bisporus oat cDNA construct. Northern analysis of the oat gene together with the pruA gene (encoding Delta(1)-pyrroline-5-carboxylate dehydrogenase) showed that transcripts of both genes were lower during the first stages of fruiting body development. The higher expression of the oat gene in later stages of development, suggests the importance of ornithine metabolism for the redistribution of metabolites in the developing mushroom. Hplc analysis of all amino acids revealed that ornithine levels increased during fruiting body development whereas proline levels fell.


Subject(s)
Agaricus/enzymology , Agaricus/growth & development , Fruiting Bodies, Fungal/enzymology , Fruiting Bodies, Fungal/growth & development , Ornithine-Oxo-Acid Transaminase/metabolism , Amino Acid Sequence , Animals , Base Sequence , Binding Sites , Fungal Proteins/chemistry , Fungal Proteins/genetics , Fungal Proteins/metabolism , Introns , Molecular Sequence Data , Ornithine/metabolism , Ornithine-Oxo-Acid Transaminase/chemistry , Ornithine-Oxo-Acid Transaminase/genetics , Phylogeny
2.
Mycol Res ; 111(Pt 4): 493-502, 2007 Apr.
Article in English | MEDLINE | ID: mdl-17512708

ABSTRACT

Accumulation of high quantities of urea in fruiting bodies is a known feature of larger basidiomycetes. Argininosuccinate synthetase (ASS) and argininosuccinate lyase (ASL) are two ornithine cycle enzymes catalysing the last two steps in the arginine biosynthetic pathway. Arginine is the main precursor for urea formation. In this work the nucleotide sequences of the genes and corresponding cDNAs encoding argininosuccinate synthetase (ass) and argininosuccinate lyase (asl) from Agaricus bisporus were determined. Eight and six introns were present in the ass and asl gene, respectively. The location of four introns in the asl gene were conserved among vertebrate asl genes. Deduced amino acid sequences, representing the first homobasidiomycete ASS and ASL protein sequences, were analysed and compared with their counterparts in other organisms. The ass ORF encoded for a protein of 425 amino acids with a calculated molecular mass of 47266Da. An alignment with ASS proteins from other organisms revealed high similarity with fungal and mammalian ASS proteins, 61-63% and 51-55% identity, respectively. The asl open reading frame (ORF) encoded a protein of 464 amino acids with an calculated mass of 52337Da and similar to ASS shared the highest similarity with fungal ASL proteins, 59-60% identity. Northern analyses of ass and asl during fruiting body formation and post-harvest development revealed that expression was significantly up-regulated from developmental stage 3 on for all the tissues studied. The expression reached a maximum at the later stages of fruiting body growth, stages 6 and 7. Both ass and asl genes were up-regulated within 3h after harvest showing that the induction mechanism is very sensitive to the harvest event and emphasizes the importance of the arginine biosynthetic pathway/ornithine cycle in post-harvest physiology.


Subject(s)
Agaricus/enzymology , Argininosuccinate Lyase/genetics , Argininosuccinate Synthase/genetics , Fungal Proteins/genetics , Ornithine/metabolism , Agaricus/growth & development , Amino Acid Sequence , Argininosuccinate Lyase/metabolism , Argininosuccinate Synthase/chemistry , Argininosuccinate Synthase/metabolism , Base Sequence , Fungal Proteins/metabolism , Gene Expression Regulation, Fungal , Genes, Fungal , Molecular Sequence Data , Phylogeny , Promoter Regions, Genetic/genetics , Sequence Alignment , Sequence Homology, Amino Acid , Up-Regulation
3.
Appl Microbiol Biotechnol ; 71(4): 486-92, 2006 Jul.
Article in English | MEDLINE | ID: mdl-16283299

ABSTRACT

Fruit body initials of Agaricus bisporus contain high levels of urea, which decrease in the following developmental stages until stage 4 (harvest) when urea levels increase again. At storage, the high urea content may affect the quality of the mushroom, i.e. by the formation of ammonia from urea through the action of urease (EC 3.5.1.5). Despite the abundance of urea in the edible mushroom A. bisporus, little is known about its physiological role. The urease gene of A. bisporus and its promoter region were identified and cloned. The coding part of the genomic DNA was interrupted by nine introns as confirmed by cDNA analysis. The first full homobasidiomycete urease protein sequence obtained comprised 838 amino acids (molecular mass 90,694 Da, pI 5.8). An alignment with fungal, plant and bacterial ureases revealed a high conservation. The expression of the urease gene, measured by Northern analyses, was studied both during normal development of fruit bodies and during post-harvest senescence. Expression in normal development was significantly up-regulated in developmental stages 5 and 6. During post-harvest senescence, the expression of urease was mainly observed in the stipe tissue; expression decreased on the first day and remained at a basal level through the remaining sampling period.


Subject(s)
Agaricus/enzymology , Agaricus/genetics , Urease/biosynthesis , Amino Acid Sequence , Base Sequence , Blotting, Northern , Blotting, Southern , Cloning, Molecular , DNA, Fungal/chemistry , DNA, Fungal/genetics , Phylogeny , Polymerase Chain Reaction , RNA, Messenger/biosynthesis , RNA, Messenger/genetics , Sequence Alignment , Sequence Analysis, DNA , Urease/genetics
4.
Biochim Biophys Acta ; 1681(2-3): 107-15, 2005 Jan 11.
Article in English | MEDLINE | ID: mdl-15627502

ABSTRACT

An extensive survey of higher fungi revealed that members of the family Agaricaceae, including Agaricus bisporus, accumulate substantial amounts of urea in their fruit bodies. An important role of the ornithine cycle enzymes in urea accumulation has been proposed. In this work, we present the cloning and sequencing of the arginase gene and its promoter region from A. bisporus. A PCR-probe based on fungal arginase was used to identify the A. bisporus arginase gene from a cDNA library. The arginase cDNA encodes a 311-aa protein which is most likely expressed in the cytosol. Expression of the cDNA in Escherichia coli was established as a His-tagged fusion protein. The arginase gene was used as a molecular marker to study expression and regulation during sporophore formation and postharvest development. The expression of the arginase gene was significantly up-regulated from developmental stage 3 onwards for all the tissues studied. A maximum of expression was reached at stage 6 for both stipe and cap tissue. In postharvest stages 5, 6 and 7 the level of expression observed was similar to normal growth stages 5, 6 and 7. A good correlation was found between arginase expression and urea content of stipe, velum, gills, cap and peel tissue. For all tissues the urea content decreased over the first four stages of development. From stage 4 onwards urea accumulated again except for stipe tissue where no significant changes were observed. The same trend was also observed for postharvest development, but the observed increase of urea in postharvest tissues was much higher.


Subject(s)
Agaricus/enzymology , Arginase/metabolism , Fruiting Bodies, Fungal/metabolism , Urea/metabolism , Agaricus/genetics , Agaricus/metabolism , Amino Acid Sequence , Arginase/genetics , Base Sequence , Blotting, Northern , Molecular Sequence Data , Ornithine/metabolism , Phylogeny , RNA, Messenger/metabolism , Sequence Analysis, Protein
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