Complete Genome Sequence of a Pseudomonas simiae Strain with Biocontrol Potential against Aphanomyces Root Rot.

Aphanomyces euteiches is a soilborne plant pathogen. It causes severe root rot in leguminous crop species. We report the complete genome sequence of a biocontrol strain, Pseudomonas simiae K-Hf-L9. The strain inhibited Aphanomyces euteiches mycelia and zoospores and suppressed root rot in field peas grown under controlled growth chamber conditions.

A Meta-Analysis to Determine the State of Biological Control of Aphanomyces Root Rot.

The increasing incidence and prevalence of the pathogen Aphanomyces euteiches in various pulse-growing regions worldwide necessitates the development of effective management strategies, including biological control agents. Numerous labs have undertaken research examining biological control methods to evaluate aphanomyces root rot suppression in multistep processes that include isolation of inhibitory organisms, lab assays, growth chamber assays, and field trials. Given the emergence of various biocontrol agents and the need to mitigate aphanomyces yield losses, we have undertaken a meta-analysis approach to analyze the effectiveness of biocontrol agents in relation to application method, biocontrol agent richness, biocontrol agent type, the type of study, and reporting system-oriented moderator variables. An effect size, calculated as a natural log response ratio, resulted in a summary weighted mean of -0.411, suggesting the overall effectiveness of biocontrol agents (p < .001). Aphanomyces root rot suppression using biological treatments showed significant heterogeneity for all moderator variables, confirming that the studies do not share a common effect size and the use of a random effect model was appropriate. Across studies, meta-analyses revealed that soil amendments, biocontrol agent application as a seed coating and suspension, bacterial and fungal biocontrol agents, mixed applications, growth chamber and field studies, and qualitative and quantitative reporting systems were all associated with significantly positive outcomes for aphanomyces root rot suppression. Our findings suggest that there is potential promise for biological control of aphanomyces root rot, and more field trials need to be conducted to demonstrate the efficacy level observed under growth chamber conditions. Moreover, we identified a lack of detailed understanding of the mechanism(s) of biological control of aphanomyces root rot as a research priority.

Impact of arbuscular mycorrhizal fungal inoculants on subsequent arbuscular mycorrhizal fungi colonization in pot-cultured field pea (Pisum sativum L.).

The use of commercial inoculants containing non-resident arbuscular mycorrhizal fungi (AMF) is an emerging technology in field crop production in Canada. The objective of this study was to assess the impact of AMF inoculants containing either a single species (Glomus irregulare) or mixed species (G. irregulare, Glomus mosseae, and Glomus clarum) on AMF root colonization and consequent plant growth parameters of field pea grown using pot cultures. Field pea was grown in both sterilized and non-sterile (i.e., natural) field-collected soil containing resident AMF and received three inoculation treatments: uninoculated control, G. irregulare only, and a mixture of AMF species of G. irregulare, G. mosseae, and G. clarum. After 42 days, the AMF community assembled in field pea roots was assessed by cloning and sequencing analysis on the LSU-ITS-SSU rDNA gene, together with a microscopic assessment of colonization, biomass production, nutrient uptake, and N(2) fixation. The identity of AMF inoculants had a significant effect on field pea performance. The mixed species AMF inoculant performed better than the single species G. irregulare alone by promoting mycorrhizal colonization, field pea biomass, N and P uptake, and N(2) fixation and did not result in a significant compositional change of the AMF community that subsequently assembled in field pea roots. In contrast, the single species G. irregulare inoculant did not significantly enhance field pea biomass, N and P uptake, and N(2) fixation, although a significant compositional change of the subsequent AMF community was observed. No significant interactions affecting these measurements were detected between the resident AMF and the introduced AMF inoculants. The observation that the mixed species AMF inoculant promoted plant growth parameters without necessarily affecting the subsequent AMF community may have important implications regarding the use of non-resident AMF inoculants in agricultural production.

Arbuscular mycorrhizal fungi colonization and phosphorus nutrition in organic field pea and lentil.

Phosphorus (P) can be low in soil under low input organic management; however, beneficial crop plant associations with arbuscular mycorrhizal fungi (AMF) are known to promote crop nutrition and increase phosphorus uptake. Thus, management strategies that promote AMF associations are particularly desirable for low-input cropping systems. The objectives of this study were to determine the impact of seeding rate on AMF colonization and the impact of AMF colonization on P concentration and uptake by organically grown field pea and lentil. Field experiments examined the impact of three seeding rates of field pea and lentil on P uptake and crop yield. Phosphorus accumulation was examined further in a controlled growth chamber experiment, in which field pea was sown at rates corresponding to those used in the field and harvested at 10-day intervals until 50 days after emergence. In the field, the level of AMF colonization of roots remained at 80% for field pea, while colonization of lentil increased with increasing seeding rates from 77% to 88%. The level of AMF colonization of field pea achieved in the growth chamber after 50 days was 80% for the two highest seeding rates and 60% for the low seeding rate. The rate at which AMF colonization occurred did not vary between treatments. Ultimately, AMF colonization level did not affect P accumulation. In contrast to several previous studies, both field and growth chamber experiments revealed that AMF colonization was not reduced at higher seeding rates. These results suggest that organic farmers may increase seeding rates without adversely affecting P nutrition.

Calibration method at the N K-edge using interstitial nitrogen gas in solid-state nitrogen-containing inorganic compounds.

The standard method of soft X-ray beamline calibration at the N K-edge uses the nu = 0 peak transition of gas-phase N(2). Interstitial N(2) gas trapped or formed within widely available solid-state ammonium- and amine-containing salts can be used for this purpose, bypassing gas-phase measurements. Evidence from non-nitrogen-containing compounds (KH(2)PO(4)) and from He-purged ammonium salts suggest that production of N(2) gas is through beam-induced decomposition. Compounds with nitrate or nitrite as anions produce coincident features and are not suitable for this calibration method.

Nitrogen K-edge XANES - an overview of reference compounds used to identify unknown organic nitrogen in environmental samples.

The chemical nature of soil organic nitrogen (N) is still poorly understood and one-third to one-half of it is typically classified as ;unknown N'. Nitrogen K-edge XANES spectroscopy has been used to develop a systematic overview on spectral features of all major N functions in soil and environmental samples. The absolute calibration of the photon energy was completed using the 1s --> pi* transitions of pure gas-phase N(2). On this basis a library of spectral features is provided for mineral N, nitro N, amino acids, peptides, and substituted pyrroles, pyridines, imidazoles, pyrazoles, pyrazines, pyrimidines and purine bases. Although N XANES was previously considered ;non-destructive', effects of radiation damage were shown for two compound classes and an approach was proposed to minimize it. This new evidence is integrated into a proposal for the evaluation spectra from environmental samples with unknown composition. Thus a basis is laid to develop N K-edge XANES as a complementary standard research method to study the molecular composition and ecological functions of ;unknown N' in soil and the environment.