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1.
PLoS One ; 19(5): e0303982, 2024.
Article in English | MEDLINE | ID: mdl-38771741

ABSTRACT

By using the power-exponential function method and the extended hyperbolic auxiliary equation method, we present the explicit solutions of the subsidiary elliptic-like equation. With the aid of the subsidiary elliptic-like equation and a simple transformation, we obtain the exact solutions of Hirota equation which include bright solitary wave, dark solitary wave, bell profile solitary wave solutions and Jacobian elliptic function solutions. Some of these solutions are found for the first time, which may be useful for depicting nonlinear physical phenomena. This approach can also be applied to solve the other nonlinear partial differential equations.


Subject(s)
Models, Theoretical , Algorithms , Nonlinear Dynamics , Computer Simulation
2.
PLoS One ; 18(11): e0294938, 2023.
Article in English | MEDLINE | ID: mdl-38019762

ABSTRACT

The aim of this paper is to introduce a novel category of radial basis functions that incorporate smoothing techniques. Initially, we employ the power augmented and shape parameter schemes to create the radial basis functions. Subsequently, we apply the newly-constructed radial basis functions using the traditional collocation method and singular values decomposition algorithm to solve the corresponding linear system equations. Finally, we analyze several pairs of radial basis functions in depth to address physical problems linked to thermal science that are governed by partial differential equations. The numerical results demonstrate that the radial basis functions constructed using the power augmented and shape parameter schemes exhibit remarkable performance.

3.
J Appl Biomater Funct Mater ; 20: 22808000221094685, 2022.
Article in English | MEDLINE | ID: mdl-35531919

ABSTRACT

Investigation of heat transport mechanism in swirling flow of viscous fluid containing silicon dioxide (SiO2) and molybdenum disulfide (MoS2) nanoparticles is performed. The flow is engendered due to stretchable rotating cylinder which immersed in infinite fluid. The boundary layer assumption is applied to simplify the governing equations of the problem. The theory of Cattaneo-Christov for thermal energy transportation is employed in the present phenomenon under the heat and mass constraints. The flow is also influenced by Lorentz force. The results for flow field, temperature, and concentration field are produced by employing the bvp4c numerical technique to the similar differential equations. According to the observations, it is noted that in the presence of Lorentz force the reduction in velocity field of the nanofluid occurs. The thermal and solutal relaxation phenomena also declines the energy transport in nanofluid flow. The outcomes are validated through the comparison with previous published studies.


Subject(s)
Nanoparticles , Silicon Dioxide , Hot Temperature , Molybdenum , Viscosity
4.
Nanomaterials (Basel) ; 12(6)2022 Mar 16.
Article in English | MEDLINE | ID: mdl-35335789

ABSTRACT

The purpose of this research is to investigate the consequence of thermophoretic particle deposition (TPD) on the movement of a TiO2/water-based micropolar nanoliquid surface in the existence of a porous medium, a heat source/sink, and bioconvection. Movement, temperature, and mass transfer measurements are also performed in the attendance and nonappearance of nanoparticle aggregation. The nonlinear partial differential equations are transformed into a system of ordinary differential equations using appropriate similarity factors, and numerical research is carried out using the Runge-Kutta-Felhberg 4th/5th order and shooting technique. The obtained results show that improved values of the porous constraint will decline the velocity profile. Improvement in heat source/sink parameter directly affects the temperature profile. Thermophoretic parameter, bioconvection Peclet number, and Lewis number decrease the concentration and bioconvection profiles. Increases in the heat source/sink constraint and solid volume fraction will advance the rate of thermal dispersion. Nanoparticle with aggregation exhibits less impact in case of velocity profile, but shows a greater impact on temperature, concentration, and bioconvection profiles.

5.
Nanomaterials (Basel) ; 12(6)2022 Mar 18.
Article in English | MEDLINE | ID: mdl-35335813

ABSTRACT

The current exploration focuses on the impact of homogeneous and heterogeneous chemical reactions on titanium dioxide-ethylene glycol (EG)-based nanoliquid flow over a rotating disk with thermal radiation. In this paper, a horizontal uniform magnetic field is used to regularise the flow field produced by a rotating disk. Further, we conduct a comparative study on fluid flow with and without aggregation. Suitable transformations are used to convert the governing partial differential equations (PDEs) into ordinary differential equations (ODEs). Later, the attained system is solved numerically by means of the shooting method in conjunction with the Runge-Kutta-Fehlberg fourth-fifth-order method (RKF-45). The outcome reveals that the fluid flow without nanoparticle aggregation shows enhanced heat transport than for augmented values of melting parameter. Furthermore, for augmented values of strength of homogeneous and heterogeneous reaction parameters, the mass transfer is greater in fluid flow with aggregation conditions.

6.
Micromachines (Basel) ; 13(2)2022 Jan 27.
Article in English | MEDLINE | ID: mdl-35208325

ABSTRACT

The rheology of different materials at the micro and macro levels is an area of great interest to many researchers, due to its important physical significance. Past experimental studies have proved the efficiency of the utilization of nanoparticles in different mechanisms for the purpose of boosting the heat transportation rate. The purpose of this study is to investigate heat and mass transport in a pseudo-plastic model past over a stretched porous surface in the presence of the Soret and Dufour effects. The involvement of tri-hybrid nanoparticles was incorporated into the pseudo-plastic model to enhance the heat transfer rate, and the transport problem of thermal energy and solute mechanisms was modelled considering the heat generation/absorption and the chemical reaction. Furthermore, traditional Fourier and Fick's laws were engaged in the thermal and solute transportation. The physical model was developed upon Cartesian coordinates, and boundary layer theory was utilized in the simplification of the modelled problem, which appears in the form of coupled partial differential equations systems (PDEs). The modelled PDEs were transformed into corresponding ordinary differential equations systems (ODEs) by engaging the appropriate similarity transformation, and the converted ODEs were solved numerically via a Finite Element Procedure (FEP). The obtained solution was plotted against numerous emerging parameters. In addition, a grid independent survey is presented. We recorded that the temperature of the tri-hybrid nanoparticles was significantly higher than the fluid temperature. Augmenting the values of the Dufour number had a similar comportment on the fluid temperature and concentration. The fluid temperature increased against a higher estimation of the heat generation parameter and the Eckert numbers. The impacts of the buoyancy force parameter and the porosity parameter were quite opposite on the fluid velocity.

7.
Sci Rep ; 12(1): 2220, 2022 Feb 09.
Article in English | MEDLINE | ID: mdl-35140256

ABSTRACT

The under-consideration article mainly focuses an unsteady three-dimensional Maxwell bio-convective nanomaterial liquid flow towards an exponentially expanding surface with the influence of chemical reaction slip condition. The feature of heat transport is achieving in the existenceof convective boundary condition and variable thermal conductivity. With the help of similarity variables, the flow form of equations is turned into a nonlinear form of coupled ODEs. The numerical solutions are calculated by adopting bvp4c function of MATLAB. Impact of distinct characteristics on the temperature, velocity microorganism and concentration field is graphically evaluated. Moreover, physical quantities are observed via graphs and tabulated data in details. It has been seen by the observation that the involvement of unsteadiness parameter restricts the change of laminar to turbulent flow. Further, for increasing velocity slip parameter velocity component in both directions shows lessening behavior. The Nusselt number exhibits diminishing behavior for larger values of Deborah number, and it shows the opposite behavior for larger values of convective parameter.

8.
Saudi J Biol Sci ; 29(1): 123-131, 2022 Jan.
Article in English | MEDLINE | ID: mdl-35002400

ABSTRACT

Breast cancer is a very frequent type of cancer and much attention is paid to therapy with considerable efforts both in the pharmacological and clinical fields.The present work aims to create a non-linear dynamic model of action of the drug Trastuzumab against HER-2 + breast cancer, mainly considering its action of ADCP (antibody-dependent phagocytosis) killing of cancer cells. The model, while also considering the other therapeutic effects induced by Trastuzumab, shows how the action of this monoclonal antibody in the induction of ADCP through the action of macrophages, is strictly connected to the formation of a multi-complex "Trastuzumab -HER-2 - macrophage" that shows a prolonged action over time, responsible for the increase in the Overall Survivor (OS) parameter reported in various. The model shows the correlation between the various therapeutic effects and the killing action of cancer cells through the variation of the dynamic fluctuation of the representative "c" parameter.

9.
Sci Rep ; 11(1): 23454, 2021 12 06.
Article in English | MEDLINE | ID: mdl-34873194

ABSTRACT

This article aims to investigate the heat and mass transfer of MHD Oldroyd-B fluid with ramped conditions. The Oldroyd-B fluid is taken as a base fluid (Blood) with a suspension of gold nano-particles, to make the solution of non-Newtonian bio-magnetic nanofluid. The surface medium is taken porous. The well-known equation of Oldroyd-B nano-fluid of integer order derivative has been generalized to a non-integer order derivative. Three different types of definitions of fractional differential operators, like Caputo, Caputo-Fabrizio, Atangana-Baleanu (will be called later as [Formula: see text]) are used to develop the resulting fractional nano-fluid model. The solution for temperature, concentration, and velocity profiles is obtained via Laplace transform and for inverse two different numerical algorithms like Zakian's, Stehfest's are utilized. The solutions are also shown in tabular form. To see the physical meaning of various parameters like thermal Grashof number, Radiation factor, mass Grashof number, Schmidt number, Prandtl number etc. are explained graphically and theoretically. The velocity and temperature of nanofluid decrease with increasing the value of gold nanoparticles, while increase with increasing the value of both thermal Grashof number and mass Grashof number. The Prandtl number shows opposite behavior for both temperature and velocity field. It will decelerate both the profile. Also, a comparative analysis is also presented between ours and the existing findings.


Subject(s)
Nanostructures/chemistry , Nanotechnology/methods , Algorithms , Computer Simulation , Gold/chemistry , Hot Temperature , Hydrodynamics , Magnetics , Mathematics , Metal Nanoparticles/chemistry , Physical Phenomena , Porosity , Temperature
10.
Micromachines (Basel) ; 12(11)2021 Oct 23.
Article in English | MEDLINE | ID: mdl-34832714

ABSTRACT

Engineers, scientists and mathematicians are greatly concerned about the thermal stability/instability of any physical system. Current contemplation discusses the role of the Soret and Dufour effects in hydro-magnetized Carreau-Yasuda liquid passed over a permeable stretched surface. Several important effects were considered while modelling the thermal transport, including Joule heating, viscous dissipation, and heat generation/absorption. Mass transportation is presented in the presence of a chemical reaction. Different nanoparticle types were mixed in the Carreau-Yasuda liquid in order to study thermal performance. Initially, governing laws were modelled in the form of PDEs. Suitable transformation was engaged for conversion into ODEs and then the resulting ODEs were handled via FEM (Finite Element Method). Grid independent analysis was performed to determine the effectiveness of the chosen methodology. Several important physical effects were explored by augmenting the values of the influential parameters. Heat and mass transfer rates were computed against different parameters and discussed in detail.

11.
Nanomaterials (Basel) ; 11(9)2021 Sep 03.
Article in English | MEDLINE | ID: mdl-34578612

ABSTRACT

Bioconvection phenomena for MHD Williamson nanofluid flow over an extending sheet of irregular thickness are investigated theoretically, and non-uniform viscosity and thermal conductivity depending on temperature are taken into account. The magnetic field of uniform strength creates a magnetohydrodynamics effect. The basic formulation of the model developed in partial differential equations which are later transmuted into ordinary differential equations by employing similarity variables. To elucidate the influences of controlling parameters on dependent quantities of physical significance, a computational procedure based on the Runge-Kutta method along shooting technique is coded in MATLAB platform. This is a widely used procedure for the solution of such problems because it is efficient with fifth-order accuracy and cost-effectiveness. The enumeration of the results reveals that Williamson fluid parameter λ, variable viscosity parameter Λµ and wall thickness parameter ς impart reciprocally decreasing effect on fluid velocity whereas these parameters directly enhance the fluid temperature. The fluid temperature is also improved with Brownian motion parameter Nb and thermophoresis parameter Nt. The boosted value of Brownian motion Nb and Lewis number Le reduce the concentration of nanoparticles. The higher inputs of Peclet number Pe and bioconvection Lewis number Lb decline the bioconvection distribution. The velocity of non-Newtonian (Williamson nanofluid) is less than the viscous nanofluid but temperature behaves oppositely.

12.
J Vis Exp ; (115)2016 09 12.
Article in English | MEDLINE | ID: mdl-27684595

ABSTRACT

The granulocyte and monocyte phagocytosis and oxidative burst (OB) activity assay can be used to study the innate immune system. This manuscript provides the necessary methodology to add this assay to an exercise immunology arsenal. The first step in this assay is to prepare two aliquots ("H" and "F") of whole blood (heparin). Then, dihydroethidium is added to the H aliquot, and both aliquots are incubated in a warm water bath followed by a cold water bath. Next, Staphylococcus aureus (S. aureus) is added to the H aliquot and fluorescein isothiocyanate-labeled S. aureus is added to the F aliquot (bacteria:phagocyte = 8:1), and both aliquots are incubated in a warm water bath followed by a cold water bath. Then, trypan blue is added to each aliquot to quench extracellular fluorescence, and the cells are washed with phosphate-buffered saline. Next, the red blood cells are lysed, and the white blood cells are fixed. Finally, a flow cytometer and appropriate analysis software are used to measure granulocyte and monocyte phagocytosis and OB activity. This assay has been used for over 20 years. After heavy and prolonged exertion, athletes experience a significant but transient increase in phagocytosis and an extended decrease in OB activity. The post-exercise increase in phagocytosis is correlated with inflammation. In contrast to normal weight individuals, granulocyte and monocyte phagocytosis is chronically elevated in overweight and obese participants, and is modestly correlated with C-reactive protein. In summary, this flow cytometry-based assay measures the phagocytosis and OB activity of phagocytes and can be used as an additional measure of exercise- and obesity-induced inflammation.


Subject(s)
Granulocytes/immunology , Monocytes/immunology , Phagocytosis/immunology , Respiratory Burst/immunology , Flow Cytometry/methods , Humans , Staphylococcal Infections/blood , Staphylococcal Infections/immunology , Staphylococcus aureus/metabolism
13.
J Virol ; 87(9): 5311-5, 2013 May.
Article in English | MEDLINE | ID: mdl-23449792

ABSTRACT

Maribavir (MBV) inhibits Epstein-Barr virus (EBV) replication and the enzymatic activity of the viral protein kinase BGLF4. MBV also inhibits expression of multiple EBV transcripts during EBV lytic infection. Here we demonstrate, with the use of a BGLF4 knockout virus, that effects of MBV on transcription take place primarily through inhibition of BGLF4. MBV inhibits viral genome copy numbers and infectivity to levels similar to and exceeding levels produced by BGLF4 knockout virus.


Subject(s)
Antiviral Agents/pharmacology , Benzimidazoles/pharmacology , Down-Regulation/drug effects , Epstein-Barr Virus Infections/virology , Gene Expression Regulation, Viral/drug effects , Herpesvirus 4, Human/drug effects , Herpesvirus 4, Human/genetics , Protein Serine-Threonine Kinases/metabolism , Ribonucleosides/pharmacology , Viral Proteins/metabolism , Cell Line , Genome, Viral/drug effects , Herpesvirus 4, Human/physiology , Humans , Protein Serine-Threonine Kinases/antagonists & inhibitors , Protein Serine-Threonine Kinases/genetics , Viral Proteins/antagonists & inhibitors , Viral Proteins/genetics , Virus Replication/drug effects
14.
J Virol ; 83(23): 12108-17, 2009 Dec.
Article in English | MEDLINE | ID: mdl-19759127

ABSTRACT

Although many drugs inhibit the replication of Epstein-Barr virus (EBV) in cell culture systems, there is still no drug that is effective and approved for use in primary EBV infection. More recently, maribavir (MBV), an l-ribofuranoside benzimidazole, has been shown to be a potent and nontoxic inhibitor of EBV replication and to have a mode of action quite distinct from that of acyclic nucleoside analogs such as acyclovir (ACV) that is based primarily on MBV's ability to block the phosphorylation of target proteins by EBV and human cytomegalovirus protein kinases. However, since the antiviral mechanisms of the drug are complex, we have carried out a comprehensive analysis of the effects of MBV on the RNA expression levels of all EBV genes with a quantitative real-time reverse transcription-PCR-based array. We show that in comparisons with ACV, the RNA expression profiles produced by the two drugs are entirely different, with MBV causing a pronounced inhibition of multiple viral mRNAs and with ACV causing virtually none. The results emphasize the different modes of action of the two drugs and suggest that the action of MBV may be linked to indirect effects on the transcription of EBV genes through the interaction of BGLF4 with multiple viral proteins.


Subject(s)
Antiviral Agents/pharmacology , Benzimidazoles/pharmacology , Herpesvirus 4, Human/drug effects , Ribonucleosides/pharmacology , Transcription, Genetic/drug effects , Virus Replication/drug effects , Acyclovir/pharmacology , Cell Line , Humans , RNA, Messenger/biosynthesis , RNA, Viral/biosynthesis
15.
J Virol ; 82(24): 12126-44, 2008 Dec.
Article in English | MEDLINE | ID: mdl-18829766

ABSTRACT

Kaposi's sarcoma-associated herpesvirus (KSHV) interacts with cell surface heparan sulfate (HS) and alpha3beta1 integrin during the early stages of infection of human dermal microvascular endothelial cells (HMVEC-d) and human foreskin fibroblasts (HFF), and these interactions are followed by virus entry overlapping with the induction of preexisting host cell signal pathways. KSHV also utilizes the amino acid transporter protein xCT for infection of adherent cells, and the xCT molecule is part of the cell surface heterodimeric membrane glycoprotein CD98 (4F2 antigen) complex known to interact with alpha3beta1 and alphaVbeta3 integrins. KSHV gB mediates adhesion of HMVEC-d, CV-1, and HT-1080 cells and HFF via its RGD sequence. Anti-alphaV and -beta1 integrin antibodies inhibited the cell adhesion mediated by KSHV-gB. Variable levels of neutralization of HMVEC-d and HFF infection were observed with antibodies against alphaVbeta3 and alphaVbeta5 integrins. Similarly, variable levels of inhibition of virus entry into adherent HMVEC-d, 293 and Vero cells, and HFF was observed by preincubating virus with soluble alpha3beta1, alphaVbeta3, and alphaVbeta5 integrins, and cumulative inhibition was observed with a combination of integrins. We were unable to infect HT1080 cells. Virus binding and DNA internalization studies suggest that alphaVbeta3 and alphaVbeta5 integrins also play roles in KSHV entry. We observed time-dependent temporal KSHV interactions with HMVEC-d integrins and CD98/xCT with three different patterns of association and dissociation. Integrin alphaVbeta5 interaction with CD98/xCT predominantly occurred by 1 min postinfection (p.i.) and dissociated at 10 min p.i., whereas alpha3beta1-CD98/xCT interaction was maximal at 10 min p.i. and dissociated at 30 min p.i., and alphaVbeta3-CD98/xCT interaction was maximal at 10 min p.i. and remained at the observed 30 min p.i. Fluorescence microscopy also showed a similar time-dependent interaction of alphaVbeta5-CD98. Confocal-microscopy studies confirmed the association of CD98/xCT with alpha3beta1 and KSHV. Preincubation of KSHV with soluble heparin and alpha3beta1 significantly inhibited this association, suggesting that the first contact with HS and integrin is an essential element in subsequent CD98-xCT interactions. Anti-CD98 and xCT antibodies did not block virus binding and entry and nuclear delivery of viral DNA; however, viral-gene expression was significantly inhibited, suggesting that CD98-xCT play roles in the post-entry stage of infection, possibly in mediating signal cascades essential for viral-gene expression. Together, these studies suggest that KSHV interacts with functionally related integrins (alphaVbeta3, alpha3beta1, and alphaVbeta5) and CD98/xCT molecules in a temporal fashion to form a multimolecular complex during the early stages of endothelial cell infection, probably mediating multiple roles in entry, signal transduction, and viral-gene expression.


Subject(s)
Endothelial Cells/metabolism , Fusion Regulatory Protein-1/metabolism , Herpesvirus 8, Human/metabolism , Integrins/metabolism , Microvessels/metabolism , Skin/metabolism , Biological Transport , Cell Adhesion , Cell Line , DNA, Viral/metabolism , Endothelial Cells/cytology , Fusion Regulatory Protein-1/immunology , Gene Expression Regulation, Viral , Herpesvirus 8, Human/genetics , Humans , Integrin alpha3beta1/immunology , Integrin alpha3beta1/metabolism , Integrin alphaVbeta3/immunology , Integrin alphaVbeta3/metabolism , Integrins/immunology , Ligands , Microvessels/cytology , Protein Binding , Receptors, Vitronectin/immunology , Receptors, Vitronectin/metabolism , Skin/cytology , Solubility , Viral Envelope Proteins/genetics , Viral Envelope Proteins/metabolism , Virus Internalization
16.
J Virol ; 82(18): 9065-74, 2008 Sep.
Article in English | MEDLINE | ID: mdl-18596100

ABSTRACT

The human genome encodes over 500 microRNAs (miRNAs), small RNAs (19 to 26 nucleotides [nt]) that regulate the expressions of diverse cellular genes. Many cellular processes are altered through a variety of mechanisms by human cytomegalovirus (HCMV) infection. We asked whether HCMV infection leads to changes in the expression of cellular miRNAs and whether HCMV-regulated miRNAs are important for HCMV replication. Levels of most miRNAs did not change markedly during infection, but some were positively or negatively regulated. Patterns of miRNA expression were linked to the time course of infection. Some similarly reregulated miRNAs share identical or similar seed sequences, suggesting coordinated regulation of miRNA species that have shared targets. miRNAs miR-100 and miR-101 were chosen for further analyses based on their reproducible changes in expression after infection and on the basis of having predicted targets in the 3' untranslated regions (3'-UTR) of genes encoding components of the mammalian target of rapamycin (mTOR) pathway, which is important during HCMV infection. Reporter genes that contain the 3'-UTR of mTOR (predicted targets for miR-100 and miR-101) or raptor (a component of the mTOR pathway; predicted site for miR-100) were constructed. Mimics of miR-100 and miR-101 inhibited expression from the mTOR construct, while only miR-100 inhibited the raptor construct. Together, miR-100 and miR-101 reduced mTOR protein levels. While the miR-100 and miR-101 mimics individually modestly inhibited production of infectious progeny, much greater inhibition was achieved with a combination of both (33-fold). Our key finding is that HCMV selectively manipulates the expression of some cellular miRNAs to help its own replication.


Subject(s)
Cytomegalovirus/pathogenicity , DNA Replication/drug effects , Gene Expression Regulation , MicroRNAs/metabolism , Animals , Cell Line , Cytomegalovirus/genetics , Cytomegalovirus/metabolism , Fibroblasts/virology , HeLa Cells , Humans , Mice , MicroRNAs/genetics , MicroRNAs/pharmacology , Oligonucleotide Array Sequence Analysis , Reverse Transcriptase Polymerase Chain Reaction
17.
Emerg Infect Dis ; 14(4): 579-85, 2008 Apr.
Article in English | MEDLINE | ID: mdl-18394275

ABSTRACT

We conducted a cross-sectional study of beta-herpesviruses in febrile pediatric oncology patients (n = 30), with a reference group of febrile pediatric solid-organ transplant recipients (n = 9). One (3.3%) of 30 cancer patients and 3 (33%) of 9 organ recipients were PCR positive for cytomegalovirus. Four (13%) of 30 cancer patients and 3 (33%) of 9 transplant recipients had human herpesvirus 6B (HHV-6B) DNAemia, which was more common within 6 months of initiation of immune suppression (4 of 16 vs. 0 of 14 cancer patients; p = 0.050). HHV-6A and HHV-7 were not detected. No other cause was identified in children with HHV-6B or cytomegalovirus DNAemia. One HHV-6B-positive cancer patient had febrile disease with concomitant hepatitis. Other HHV-6B-positive children had mild "viral" illnesses, as did a child with primary cytomegalovirus infection. Cytomegalovirus and HHV-6B should be included in the differential diagnosis of febrile disease in children with cancer.


Subject(s)
Betaherpesvirinae/isolation & purification , Herpesviridae Infections/complications , Herpesviridae Infections/virology , Immunocompromised Host , Neoplasms/complications , Adolescent , Adult , Child , Child, Preschool , Cross-Sectional Studies , Female , Humans , Infant , Male , Organ Transplantation/adverse effects , Viremia/complications , Viremia/virology
18.
Virology ; 354(2): 286-98, 2006 Oct 25.
Article in English | MEDLINE | ID: mdl-16904149

ABSTRACT

Human cytomegalovirus (HCMV; Human herpesvirus 5) and the other betaherpesviruses encode a number of distinct gene families, including the US12 family, which is represented only in the cytomegaloviruses of higher primates, and is comprised of a set of 10 contiguous genes (US12 through US21), each encoding a seven-transmembrane (7TM) protein. Nonessential for replication in cell culture but well-conserved among clinical isolates, little is known of possible US12 family member functions, other than a previously identified amino acid sequence similarity between US21 and a group of 7TM proteins that include known inhibitors of apoptosis, and a very limited description of similarity between US12 family members and G-protein-coupled receptors (GPCR). As a prelude to biochemical analysis, we have conducted a detailed analysis of the relationships among US12 family members and between these proteins and other proteins, particularly GPCR and other 7TM molecules. In most cases, the closest relatives of individual genes are their colinear counterparts in the other viruses. Thus, the initial duplication and divergence events that resulted in the current version of the US12 family preceded divergence of the rhesus and hominoid lineages. Our phylogenetic analysis indicates that the US12 family represents a distinct branch of the 7TM superfamily. Although they are distantly related, at least some of the US12 family members may have GPCR-related properties, but they are also likely to embody functions and mechanisms that differ from more conventional GPCRs. Our analyses suggest that the 7TM structure of US12 family members constitutes a functionally flexible structural scaffold that can be readily adapted to diverse functional ends. This strategy may be the driving force in the emergence of the several families of duplicated and diverged betaherpesvirus genes.


Subject(s)
Cytomegalovirus/metabolism , Membrane Proteins/chemistry , Primates/virology , Viral Envelope Proteins/chemistry , Viral Proteins/metabolism , Amino Acid Sequence , Animals , Cytomegalovirus/genetics , Cytomegalovirus/immunology , Cytomegalovirus Infections/veterinary , Cytomegalovirus Infections/virology , Membrane Proteins/genetics , Membrane Proteins/metabolism , Molecular Sequence Data , Phylogeny , Protein Conformation , Viral Envelope Proteins/genetics , Viral Proteins/genetics , Viral Proteins/immunology
19.
J Virol ; 80(3): 1191-203, 2006 Feb.
Article in English | MEDLINE | ID: mdl-16414996

ABSTRACT

The human cytomegalovirus (HCMV) US12 gene family is a group of predicted seven-transmembrane, G-protein-coupled receptor-related proteins, about which little is known. Specific rabbit polyclonal antibodies detected US17 and US18 beginning 54 and 36 h after infection, respectively, with expression of both proteins dependent on viral DNA synthesis. While US14 and US18 are expressed exclusively in the cytoplasm, we unexpectedly found abundant expression of US17 in both the cytoplasm and nucleoplasm. N- and C-terminally tagged versions of US17 were readily detected in the cytoplasm of transfected mammalian cells, but not in nuclei, suggesting that nuclear localization involves other viral proteins or an infection-triggered cellular process. There was no specific colocalization between US17 and other nuclear expressed HCMV-encoded proteins (IE-2, DNA polymerase processivity factor, and pp28/UL99). To determine whether the observed nuclear localization might be the product of a process by which a soluble C-terminal segment of the full-length protein is expressed, we constructed a recombinant virus that incorporates a synthetic epitope at its N terminus, which in conjunction with the antipeptide antibody that targets its predicted cytoplasmic C-terminal segment, enables simultaneous independent detection of both termini. In cells infected with the recombinant, the US17 N and C termini had limited colocalization, with the N-terminal segment not detected in nuclei, supporting the segmentation hypothesis. Consistent with this, a fragment with an apparent molecular size of 10 kDa was detected by immunoblotting. We have identified the first viral example of a seven-transmembrane protein that is either segmented or expressed in nuclei. Further study will be required to learn the mechanism by which this occurs and the function of the nuclear localizing segment. This likely represents yet another mechanism by which a virus has hijacked or modified cellular regulatory pathways for its benefit.


Subject(s)
Cytomegalovirus/metabolism , Viral Proteins/metabolism , Animals , Antibodies, Viral/biosynthesis , Base Sequence , Cell Line , Cell Nucleus/virology , Cytomegalovirus/genetics , Cytomegalovirus/immunology , Cytomegalovirus Infections/virology , Cytoplasm/virology , DNA, Viral/genetics , Gene Expression , Genes, Viral , HeLa Cells , Humans , Kinetics , Models, Biological , Nuclear Localization Signals , RNA, Messenger/genetics , RNA, Viral/genetics , Rabbits , Recombinant Proteins/genetics , Recombinant Proteins/immunology , Recombinant Proteins/metabolism , Viral Proteins/genetics , Viral Proteins/immunology
20.
J Virol ; 77(14): 7978-90, 2003 Jul.
Article in English | MEDLINE | ID: mdl-12829837

ABSTRACT

Kaposi's sarcoma (KS)-associated herpesvirus or human herpesvirus 8 (HHV-8) DNA and transcripts have been detected in the B cells, macrophages, keratinocytes, and endothelial and epithelial cells of KS patients. In vitro, HHV-8 infects human B, endothelial, epithelial, and fibroblast cells, as well as animal cells, and the infection is characterized by (i) absence of lytic replication by the input virus and (ii) latent infection. For its initial binding to target cells, HHV-8 uses ubiquitous heparan sulfate molecules via its envelope-associated glycoproteins gB and gpK8.1A. HHV-8 also interacts with the alpha3beta1 integrin via its glycoprotein gB, and virus binding studies suggest that alpha3beta1 is one of the HHV-8 entry receptors (S. M. Akula, N. P. Pramod, F. Z. Wang, and B. Chandran, Cell 108:407-419, 2002). In this study, morphological and biochemical techniques were used to examine the entry of HHV-8 into human foreskin fibroblasts (HFF). HHV-8 was detected in coated vesicles and in large, smooth-surfaced endocytic vesicles. Fusion of viral envelope with the vesicle wall was also observed. In immune electron microscopy, anti-HHV-8 gB antibodies colocalized with virus-containing endocytic vesicles. In fluorescence microscopic analyses, transferrin was colocalized with HHV-8. HHV-8 infection was significantly inhibited by preincubation of cells with chlorpromazine HCl, which blocks endocytosis via clathrin-coated pits, but not by nystatin and cholera toxin B, which blocks endocytosis via caveolae and induces the dissociation of lipid rafts, respectively. Infection was also inhibited by blocking the acidification of endosomes by NH(4)Cl and bafilomycin A. Inhibition of HHV-8 open reading frame 73 gene expression by chlorpromazine HCl, bafilomycin A, and NH(4)Cl demonstrated that the virions in the vesicles could proceed to cause an infection. Taken together, these findings suggest that for its infectious entry into HFF, HHV-8 uses clathrin-mediated endocytosis and a low-pH intracellular environment.


Subject(s)
Endocytosis , Fibroblasts/virology , Herpesvirus 8, Human/pathogenicity , Cell Line , Cells, Cultured , Clathrin/antagonists & inhibitors , Clathrin/metabolism , Endosomes/virology , Humans , Hydrogen-Ion Concentration , Microscopy, Electron , Microscopy, Immunoelectron , Sarcoma, Kaposi/virology , Transferrin/metabolism
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