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1.
Comput Biol Med ; 173: 108348, 2024 May.
Article in English | MEDLINE | ID: mdl-38531249

ABSTRACT

Drug-induced diseases are the most important component of iatrogenic disease. It is the duty of doctors to provide a reasonable and safe dose of medication. Gunqile-7 is a Mongolian medicine with analgesic and anti-inflammatory effects. As a foreign substance in the body, even with reasonable medication, it may produce varying degrees of adverse reactions or toxic side effects. Since the cost of collecting Gunqile-7 for pharmacological animal trials is high and the data sample is small, this paper employs transfer learning and data augmentation methods to study the toxicity of Gunqile-7. More specifically, to reduce the necessary number of training samples, the data augmentation approach is employed to extend the data set. Then, the transfer learning method and one-dimensional convolutional neural network are utilized to train the network. In addition, we use the support vector machine-recursive feature elimination method for feature selection to reduce features that have adverse effects on model predictions. Furthermore, due to the important role of the pre-trained model of transfer learning, we select a quantitative toxicity prediction model as the pre-trained model, which is consistent with the purpose of this paper. Lastly, the experimental results demonstrate the efficiency of the proposed method. Our method can improve accuracy by up to 9 percentage points compared to the method without transfer learning on a small sample set.


Subject(s)
Machine Learning , Neural Networks, Computer , Support Vector Machine
2.
IEEE J Biomed Health Inform ; 28(5): 3102-3113, 2024 May.
Article in English | MEDLINE | ID: mdl-38483807

ABSTRACT

The classification analysis of incomplete and imbalanced data is still a challenging task since these issues could negatively impact the training of classifiers, which were also found in our study on the physical fitness assessments of patients. And in fields such as healthcare, there are higher requirements for the accuracy of the generated imputation values. To train a high-performance classifier and pursue high accuracy, we attempted to resolve any potential negative impact by using a novel algorithmic approach based on the combination of multivariate imputation by chained equations and the ensemble learning method (MICEEN), which can solve the two problems simultaneously. We used multivariate imputation by chained equations to generate more accurate imputation values for the training set passed to ensemble learning to build a predictor. On the other hand, missing values were introduced into minority classes and used them to generate new samples belonging to the minority classes in order to balance the distribution of classes. On real-world datasets, we perform extensive experiments to assess our method and compare it to other state-of-the-art approaches. The advantages of the proposed method are demonstrated by experimental results for the benchmark datasets and self-collected datasets of physical fitness assessment of tumor patients with varying missing rates.


Subject(s)
Algorithms , Machine Learning , Humans , Databases, Factual , Physical Fitness/physiology , Multivariate Analysis
3.
Microb Biotechnol ; 17(1): e14364, 2024 Jan.
Article in English | MEDLINE | ID: mdl-37929823

ABSTRACT

The human microbiome plays a crucial role in maintaining health, with advances in high-throughput sequencing technology and reduced sequencing costs triggering a surge in microbiome research. Microbiome studies generally incorporate five key phases: design, sampling, sequencing, analysis, and reporting, with sequencing strategy being a crucial step offering numerous options. Present mainstream sequencing strategies include Amplicon sequencing, Metagenomic Next-Generation Sequencing (mNGS), and Targeted Next-Generation Sequencing (tNGS). Two innovative technologies recently emerged, namely MobiMicrobe high-throughput microbial single-cell genome sequencing technology and 2bRAD-M simplified metagenomic sequencing technology, compensate for the limitations of mainstream technologies, each boasting unique core strengths. This paper reviews the basic principles and processes of these three mainstream and two novel microbiological technologies, aiding readers in understanding the benefits and drawbacks of different technologies, thereby guiding the selection of the most suitable method for their research endeavours.


Subject(s)
Microbiota , Humans , Metagenome , High-Throughput Nucleotide Sequencing/methods , Metagenomics , Technology
4.
Sensors (Basel) ; 23(12)2023 Jun 07.
Article in English | MEDLINE | ID: mdl-37420573

ABSTRACT

Wearable exoskeletons can help people with mobility impairments by improving their rehabilitation. As electromyography (EMG) signals occur before movement, they can be used as input signals for the exoskeletons to predict the body's movement intention. In this paper, the OpenSim software is used to determine the muscle sites to be measured, i.e., rectus femoris, vastus lateralis, semitendinosus, biceps femoris, lateral gastrocnemius, and tibial anterior. The surface electromyography (sEMG) signals and inertial data are collected from the lower limbs while the human body is walking, going upstairs, and going uphill. The sEMG noise is reduced by a wavelet-threshold-based complete ensemble empirical mode decomposition with adaptive noise (CEEMDAN) reduction algorithm, and the time-domain features are extracted from the noise-reduced sEMG signals. Knee and hip angles during motion are calculated using quaternions through coordinate transformations. The random forest (RF) regression algorithm optimized by cuckoo search (CS), shortened as CS-RF, is used to establish the prediction model of lower limb joint angles by sEMG signals. Finally, root mean square error (RMSE), mean absolute error (MAE), and coefficient of determination (R2) are used as evaluation metrics to compare the prediction performance of the RF, support vector machine (SVM), back propagation (BP) neural network, and CS-RF. The evaluation results of CS-RF are superior to other algorithms under the three motion scenarios, with optimal metric values of 1.9167, 1.3893, and 0.9815, respectively.


Subject(s)
Knee , Muscle, Skeletal , Humans , Electromyography/methods , Muscle, Skeletal/physiology , Lower Extremity , Knee Joint/physiology , Algorithms
5.
Comput Biol Med ; 159: 106938, 2023 06.
Article in English | MEDLINE | ID: mdl-37119553

ABSTRACT

Using ECG signals captured by wearable devices for emotion recognition is a feasible solution. We propose a deep convolutional neural network incorporating attentional mechanisms for ECG emotion recognition. In order to address the problem of individuality differences in emotion recognition tasks, we incorporate an improved Convolutional Block Attention Module (CBAM) into the proposed deep convolutional neural network. The deep convolutional neural network is responsible for capturing ECG features. Channel attention in CBAM is responsible for adding weight information to ECG features of different channels and spatial attention is responsible for the weighted representation of ECG features of different regions inside the channel. We used three publicly available datasets, WESAD, DREAMER, and ASCERTAIN, for the ECG emotion recognition task. The new state-of-the-art results are set in three datasets for multi-class classification results, WESAD for tri-class results, and ASCERTAIN for two-category results, respectively. A large number of experiments are performed, providing an interesting analysis of the design of the convolutional structure parameters and the role of the attention mechanism used. We propose to use large convolutional kernels to improve the effective perceptual field of the model and thus fully capture the ECG signal features, which achieves better performance compared to the commonly used small kernels. In addition, channel attention and spatial attention were added to the deep convolutional model separately to explore their contribution levels. We found that in most cases, channel attention contributed to the model at a higher level than spatial attention.


Subject(s)
Neural Networks, Computer , Wearable Electronic Devices , Algorithms , Emotions , Electrocardiography
6.
IEEE J Biomed Health Inform ; 26(8): 4165-4175, 2022 08.
Article in English | MEDLINE | ID: mdl-35544509

ABSTRACT

For the purpose of quantitative analysis, this paper proposes a wearable gait analysis method for Parkinson's disease (PD) to evaluates the motor ability. The error state Kalman filter (ESKF) is used for attitude estimation, and the gait parameters are modified by phase segmentation and zero velocity update (ZUPT) algorithm. In addition, this study uses gait parameters as classifier features to recognize abnormal gait, and compares the recognition effect with statistical features. The effect of our gait system is verified by comparison with the OptiTrack system, and the mean absolute error (MAE) of step length and foot clearance are 2.52 ±3.61 cm and 0.96 ±1.24 cm respectively. Forty Parkinson's patients and forty age-matched healthy people are recruited for gait comparison, the analysis results showed significant differences between the two groups. The abnormal gait recognition results show that gait features have stronger generalization ability than statistical features in leave-one-subject-out (LOSO) validation. The method proposed in this study can be applied to the gait analysis and objective evaluation of PD.


Subject(s)
Parkinson Disease , Wearable Electronic Devices , Foot , Gait , Gait Analysis , Humans , Parkinson Disease/diagnosis
7.
IEEE J Biomed Health Inform ; 26(8): 4314-4324, 2022 08.
Article in English | MEDLINE | ID: mdl-35439149

ABSTRACT

The development of activity recognition based on multi-modal data makes it possible to reduce human intervention in the process of monitoring. This paper proposes an efficient and cost-effective multi-modal sensing framework for activity monitoring, it can automatically identify human activities based on multi-modal data, and provide help to patients with moderate disabilities. The multi-modal sensing framework for activity monitoring relies on parallel processing of videos and inertial data. A new supervised adaptive multi-modal fusion method (AMFM) is used to process multi-modal human activity data. Spatio-temporal graph convolution network with adaptive loss function (ALSTGCN) is proposed to extract skeleton sequence features, and long short-term memory fully convolutional network (LSTM-FCN) module with adaptive loss function is adapted to extract inertial data features. An adaptive learning method is proposed at the decision level to learn the contribution of the two modalities to the classification results. The effectiveness of the algorithm is demonstrated on two public multi-modal datasets (UTD-MHAD and C-MHAD) and a new multi-modal dataset H-MHAD collected from our laboratory. The results show that the performance of the AMFM approach on three datasets is better than the performance of the video or the inertial-based single-modality model. The class-balanced cross-entropy loss function further improves the model performance based on the H-MHAD dataset. The accuracy of action recognition is 91.18%, and the recall rate of falling activity is 100%. The results illustrate that using multiple heterogeneous sensors to realize automatic process monitoring is a feasible alternative to the manual response.


Subject(s)
Algorithms , Neural Networks, Computer , Fitness Trackers , Humans , Monitoring, Physiologic
8.
IEEE J Biomed Health Inform ; 26(5): 2008-2019, 2022 05.
Article in English | MEDLINE | ID: mdl-34986108

ABSTRACT

New technological innovations are changing the future of healthcare system. Identification of factors that are responsible for causing depression may lead to new experiments and treatments. Because depression as a disease is becoming a leading community health concern worldwide. Using machine learning techniques this article presents a complete methodological framework to process and explore the heterogenous data and to better understand the association between factors related to quality of life and depression. Subsequently, the experimental study is mainly divided into two parts. In the first part, a data consolidation process is presented. The relationship of data is formed and to uniquely identify each relation in data the concept of the Secure Hash Algorithm is adopted. Hashing is used to locate and index the actual items in the data. The second part proposed a model using both unsupervised and supervised machine learning techniques. The consolidation approach helped in providing a base for formulation and validation of the research hypothesis. The Self organizing map provided 08 cluster solution and the classification problems were taken from the clustered data to further validate the performance of the posterior probability multi-class Support Vector Machine. The expectations of the importance sampling resulted in factors responsible for causing depression. The proposed model was adopted to improve the classification performance, and the result showed classification accuracy of 91.16%.


Subject(s)
Depression , Quality of Life , Delivery of Health Care , Depression/diagnosis , Humans , Machine Learning , Support Vector Machine
9.
Sensors (Basel) ; 20(7)2020 Apr 08.
Article in English | MEDLINE | ID: mdl-32276521

ABSTRACT

Coaches and athletes are constantly seeking novel training methodologies in an attempt to improve athletic performance. This paper proposes a method of rowing sport capture and analysis based on Inertial Measurement Units (IMUs). A canoeist's motion was collected by multiple miniature inertial sensor nodes. The gradient descent method was used to fuse data and obtain the canoeist's attitude information after sensor calibration, and then the motions of canoeist's actions were reconstructed. Stroke quality was performed based on the estimated joint angles. Machine learning algorithm was used as the classification method to divide the stroke cycle into different phases, including propulsion-phase and recovery-phase, a quantitative kinematic analysis was carried out. Experiments conducted in this paper demonstrated that our method possesses the capacity to reveal the similarities and differences between novice and coach, the whole process of canoeist's motions can be analyzed with satisfactory accuracy validated by videography method. It can provide quantitative data for coaches or athletes, which can be used to improve the skills of rowers.


Subject(s)
Algorithms , Motion , Water Sports , Accelerometry , Biomechanical Phenomena , Humans , Joints/physiology , Principal Component Analysis , Upper Extremity/physiology , Video Recording , Wearable Electronic Devices
10.
Sensors (Basel) ; 20(4)2020 Feb 21.
Article in English | MEDLINE | ID: mdl-32098239

ABSTRACT

Human gait reflects health condition and is widely adopted as a diagnostic basisin clinical practice. This research adopts compact inertial sensor nodes to monitor the functionof human lower limbs, which implies the most fundamental locomotion ability. The proposedwearable gait analysis system captures limb motion and reconstructs 3D models with high accuracy.It can output the kinematic parameters of joint flexion and extension, as well as the displacementdata of human limbs. The experimental results provide strong support for quick access to accuratehuman gait data. This paper aims to provide a clue for how to learn more about gait postureand how wearable gait analysis can enhance clinical outcomes. With an ever-expanding gait database,it is possible to help physiotherapists to quickly discover the causes of abnormal gaits, sports injuryrisks, and chronic pain, and provides guidance for arranging personalized rehabilitation programsfor patients. The proposed framework may eventually become a useful tool for continually monitoringspatio-temporal gait parameters and decision-making in an ambulatory environment.


Subject(s)
Gait/physiology , Wearable Electronic Devices , Adult , Algorithms , Humans , Male , Monitoring, Physiologic/methods , Range of Motion, Articular/physiology , Young Adult
11.
Sensors (Basel) ; 19(20)2019 Oct 19.
Article in English | MEDLINE | ID: mdl-31635127

ABSTRACT

Combining research areas of biomechanics and pedestrian dead reckoning (PDR) provides a very promising way for pedestrian positioning in environments where Global Positioning System (GPS) signals are degraded or unavailable. In recent years, the PDR systems based on a smartphone's built-in inertial sensors have attracted much attention in such environments. However, smartphone-based PDR systems are facing various challenges, especially the heading drift, which leads to the phenomenon of estimated walking path passing through walls. In this paper, the 2D PDR system is implemented by using a pocket-worn smartphone, and then enhanced by introducing a map-matching algorithm that employs a particle filter to prevent the wall-crossing problem. In addition, to extend the PDR system for 3D applications, the smartphone's built-in barometer is used to measure the pressure variation associated to the pedestrian's vertical displacement. Experimental results show that the map-matching algorithm based on a particle filter can effectively solve the wall-crossing problem and improve the accuracy of indoor PDR. By fusing the barometer readings, the vertical displacement can be calculated to derive the floor transition information. Despite the inherent sensor noises and complex pedestrian movements, smartphone-based 3D pedestrian positioning systems have considerable potential for indoor location-based services (LBS).

12.
Micromachines (Basel) ; 9(9)2018 Sep 03.
Article in English | MEDLINE | ID: mdl-30424375

ABSTRACT

Gait and posture are regular activities which are fully controlled by the sensorimotor cortex. In this study, fluctuations of joint angle and asymmetry of foot elevation in human walking stride records are analyzed to assess gait in healthy adults and patients affected with gait disorders. This paper aims to build a low-cost, intelligent and lightweight wearable gait analysis platform based on the emerging body sensor networks, which can be used for rehabilitation assessment of patients with gait impairments. A calibration method for accelerometer and magnetometer was proposed to deal with ubiquitous orthoronal error and magnetic disturbance. Proportional integral controller based complementary filter and error correction of gait parameters have been defined with a multi-sensor data fusion algorithm. The purpose of the current work is to investigate the effectiveness of obtained gait data in differentiating healthy subjects and patients with gait impairments. Preliminary clinical gait experiments results showed that the proposed system can be effective in auxiliary diagnosis and rehabilitation plan formulation compared to existing methods, which indicated that the proposed method has great potential as an auxiliary for medical rehabilitation assessment.

13.
IEEE Trans Inf Technol Biomed ; 16(4): 691-9, 2012 Jul.
Article in English | MEDLINE | ID: mdl-22614724

ABSTRACT

Human activity recognition by using wearable sensors has gained tremendous interest in recent years among a range of health-related areas. To automatically recognize various human activities from wearable sensor data, many classification methods have been tried in prior studies, but most of them lack the incremental learning abilities. In this study, an incremental learning method is proposed for sensor-based human activity recognition. The proposed method is designed based on probabilistic neural networks and an adjustable fuzzy clustering algorithm. The proposed method may achieve the following features. 1) It can easily learn additional information from new training data to improve the recognition accuracy. 2) It can freely add new activities to be detected, as well as remove existing activities. 3) The updating process from new training data does not require previously used training data. An experiment was performed to collect realistic wearable sensor data from a range of activities of daily life. The experimental results showed that the proposed method achieved a good tradeoff between incremental learning ability and the recognition accuracy. The experimental results from comparison with other classification methods demonstrated the effectiveness of the proposed method further.


Subject(s)
Activities of Daily Living/classification , Fuzzy Logic , Monitoring, Ambulatory/instrumentation , Monitoring, Ambulatory/methods , Movement/physiology , Neural Networks, Computer , Acceleration , Adult , Algorithms , Clothing , Cluster Analysis , Databases, Factual , Electronics, Medical , Female , Humans , Male , Models, Statistical , Reproducibility of Results , Telemetry/instrumentation , Telemetry/methods
14.
Physiol Meas ; 32(3): 347-58, 2011 Mar.
Article in English | MEDLINE | ID: mdl-21330698

ABSTRACT

Human activity recognition (HAR) by using wearable accelerometers has gained significant interest in recent years in a range of healthcare areas, including inferring metabolic energy expenditure, predicting falls, measuring gait parameters and monitoring daily activities. The implementation of HAR relies heavily on the correctness of sensor fixation. The installation errors of wearable accelerometers may dramatically decrease the accuracy of HAR. In this paper, a method is proposed to improve the robustness of HAR to the installation errors of accelerometers. The method first calculates a transformation matrix by using Gram-Schmidt orthonormalization in order to eliminate the sensor's orientation error and then employs a low-pass filter with a cut-off frequency of 10 Hz to eliminate the main effect of the sensor's misplacement. The experimental results showed that the proposed method obtained a satisfactory performance for HAR. The average accuracy rate from ten subjects was 95.1% when there were no installation errors, and was 91.9% when installation errors were involved in wearable accelerometers.


Subject(s)
Acceleration , Activities of Daily Living , Monitoring, Ambulatory/instrumentation , Monitoring, Ambulatory/methods , Algorithms , Calibration , Female , Humans , Male , Monitoring, Ambulatory/standards , Research Design , Young Adult
15.
J Telemed Telecare ; 15(1): 23-7, 2009.
Article in English | MEDLINE | ID: mdl-19139216

ABSTRACT

Telemedicine in China began in the mid-1980s and the early Chinese telemedicine activities were mostly based on store-and-forward techniques as the telecommunication infrastructure required for realtime work was not available. In recent years, telemedicine in China has developed quickly with the rapid growth of telecommunication networks. China now has three major telemedicine networks: the Golden Health Network (GHN), the International MedioNet of China (IMNC) network and the People's Liberation Army (PLA) telemedicine network. Nonetheless, research and application of telemedicine is at a relatively early stage in China. We suggest that the Chinese government needs to make a policy in favour of rural people and invest more in telemedicine, so that they can enjoy low-cost telemedicine services and foster a large telemedicine market.


Subject(s)
Rural Health Services/organization & administration , Telemedicine/organization & administration , China , Computer Communication Networks/trends , Healthcare Disparities , Humans , Rural Population , Telemedicine/economics , Telemedicine/trends
16.
Int J Med Robot ; 4(3): 252-7, 2008 Sep.
Article in English | MEDLINE | ID: mdl-18720426

ABSTRACT

BACKGROUND: Computer-assisted orthopaedic surgery (CAOS) has great advantages in precise determination of focus, planning an optimal surgical project and assuring the success of operation. In adopting CAOS, China is facing many problems, gaining experience and learning lessons. METHODS: A literature review of the current development of CAOS in China and case studies, including adopted CAOS systems, CAOS clinical applications in the orthopaedic field and emerging CAOS research in China was carried out. Experience and lessons gained through adopting CAOS in China are also illustrated and analysed. RESULTS AND DISCUSSION: In the course of investigating the current development of CAOS in China, existing problems were analysed, experience gained and lessons illustrated. CONCLUSIONS: By summarizing the Chinese experience and lessons of adopting CAOS, we not only deliver an in-depth understanding of present CAOS development and give advice for future CAOS development in China; this also has implications for other developing countries where CAOS development is burgeoning.


Subject(s)
Forecasting , Orthopedic Procedures/trends , Robotics/trends , Surgery, Computer-Assisted/trends , User-Computer Interface , China
17.
Telemed J E Health ; 14(5): 454-60, 2008 Jun.
Article in English | MEDLINE | ID: mdl-18578680

ABSTRACT

The objective of this study was to develop a medical information query system based on Unstructured Supplementary Service Data. Several wireless data transmission modes of Global Systems for Mobile networks are discussed and each mode is analyzed in detail. The framework and configuration of the system is described, and functions of main system modules are illustrated. The medical information query system was implemented and tested to demonstrate practicality and reliability. The practical test shows that the system is convenient, efficient, quick, and secure.


Subject(s)
Information Storage and Retrieval/methods , Telemedicine , China , Databases as Topic
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