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1.
Cardiol Young ; 30(8): 1109-1117, 2020 Aug.
Article in English | MEDLINE | ID: mdl-32631466

ABSTRACT

OBJECTIVE: To determine the Final ICU Need in the 24 hours prior to ICU discharge for children with cardiac disease by utilising a single-centre survey. METHODS: A cross-sectional survey was utilised to determine Final ICU Need, which was categorised as "Cardiovascular", "Respiratory", "Feeding", "Sedation", "Systems Issue", or "Other" for each encounter. Survey responses were obtained from attending physicians who discharged children (≤18 years of age with ICU length of stay >24 hours) from the Cardiac ICU between April 2016 and July 2018. MEASUREMENTS AND RESULTS: Survey response rate was 99% (n = 1073), with 667 encounters eligible for analysis. "Cardiovascular" (61%) and "Respiratory" (26%) were the most frequently chosen Final ICU Needs. From a multivariable mixed effects logistic regression model fitted to "Cardiovascular" and "Respiratory", operations with significantly reduced odds of having "Cardiovascular" Final ICU Need included Glenn palliation (p = 0.003), total anomalous pulmonary venous connection repair (p = 0.024), truncus arteriosus repair (p = 0.044), and vascular ring repair (p < 0.001). Short lengths of stay (<7.9 days) had significantly higher odds of "Cardiovascular" Final ICU Need (p < 0.001). "Cardiovascular" and "Respiratory" Final ICU Needs were also associated with provider and ICU discharge season. CONCLUSIONS: Final ICU Need is a novel metric to identify variations in Cardiac ICU utilisation and clinical trajectories. Final ICU Need was significantly influenced by benchmark operation, length of stay, provider, and season. Future applications of Final ICU Need include targeting quality and research initiatives, calibrating provider and family expectations, and identifying provider-level variability in care processes and mental models.


Subject(s)
Intensive Care Units, Pediatric , Patient Discharge , Child , Cross-Sectional Studies , Humans , Intensive Care Units , Length of Stay , Logistic Models , Risk Factors
2.
J Neurol Neurosurg Psychiatry ; 76(11): 1601-3, 2005 Nov.
Article in English | MEDLINE | ID: mdl-16227563

ABSTRACT

Some authors contend that patients with idiopathic neurological disease who are also anti-gliadin antibody seropositive are gluten sensitive. However, anti-gliadin antibodies lack disease specificity being found in 10% of healthy blood donors. We report a study comparing anti-gliadin antibody with other food antibodies in patients with idiopathic ataxia (20), hereditary ataxias (seven), or idiopathic peripheral neuropathy (32). Patients were HLA typed. IgA anti-tissue transglutaminase antibodies (tTG) were measured. No case was positive for IgA anti-tTG making occult coeliac disease unlikely. HLA DQ2 and HLA DQ8 were found distributed equally across all patient groups and unrelated to gliadin antibody status. HLA DQ2 expressing, anti-gliadin antibody positive cases (so called "gluten ataxia") were rare in our clinics (four cases in 2 years from a population of 2 million). We conclude that coeliac disease per se is not commonly associated with either idiopathic ataxia or idiopathic peripheral neuropathy. Our study also casts doubt on the nosological status of "gluten ataxia" as a discreet disease entity. All food antibodies tested, particularly IgG, were a common finding in both ataxia and peripheral neuropathy groups. No particular food antibody was associated with any patient group. Food antibodies were equally common in hereditary ataxias. We conclude they are a non-specific finding.


Subject(s)
Antibodies/immunology , Ataxia/immunology , Gliadin/immunology , Peripheral Nervous System Diseases/immunology , Adult , Aged , Aged, 80 and over , Enzyme-Linked Immunosorbent Assay , Female , HLA-DQ Antigens/immunology , Humans , Immunoglobulin A/immunology , Immunoglobulin G/immunology , Male , Middle Aged , Prospective Studies
3.
Proteins ; 61 Suppl 7: 143-151, 2005.
Article in English | MEDLINE | ID: mdl-16187356

ABSTRACT

A number of new and newly improved methods for predicting protein structure developed by the Jones-University College London group were used to make predictions for the CASP6 experiment. Structures were predicted with a combination of fold recognition methods (mGenTHREADER, nFOLD, and THREADER) and a substantially enhanced version of FRAGFOLD, our fragment assembly method. Attempts at automatic domain parsing were made using DomPred and DomSSEA, which are based on a secondary structure parsing algorithm and additionally for DomPred, a simple local sequence alignment scoring function. Disorder prediction was carried out using a new SVM-based version of DISOPRED. Attempts were also made at domain docking and "microdomain" folding in order to build complete chain models for some targets.


Subject(s)
Computational Biology/methods , Proteomics/methods , Algorithms , Computer Simulation , Computers , Databases, Protein , Dimerization , Humans , Models, Molecular , Protein Conformation , Protein Folding , Protein Structure, Secondary , Protein Structure, Tertiary , Reproducibility of Results , Sequence Alignment , Software
4.
J Mol Biol ; 337(3): 635-45, 2004 Mar 26.
Article in English | MEDLINE | ID: mdl-15019783

ABSTRACT

An automatic method for recognizing natively disordered regions from amino acid sequence is described and benchmarked against predictors that were assessed at the latest critical assessment of techniques for protein structure prediction (CASP) experiment. The method attains a Wilcoxon score of 90.0, which represents a statistically significant improvement on the methods evaluated on the same targets at CASP. The classifier, DISOPRED2, was used to estimate the frequency of native disorder in several representative genomes from the three kingdoms of life. Putative, long (>30 residue) disordered segments are found to occur in 2.0% of archaean, 4.2% of eubacterial and 33.0% of eukaryotic proteins. The function of proteins with long predicted regions of disorder was investigated using the gene ontology annotations supplied with the Saccharomyces genome database. The analysis of the yeast proteome suggests that proteins containing disorder are often located in the cell nucleus and are involved in the regulation of transcription and cell signalling. The results also indicate that native disorder is associated with the molecular functions of kinase activity and nucleic acid binding.


Subject(s)
Models, Molecular , Proteins/chemistry , Databases, Genetic , Genome , Genome, Bacterial , Genome, Fungal , Protein Conformation
5.
Bioinformatics ; 19(13): 1650-5, 2003 Sep 01.
Article in English | MEDLINE | ID: mdl-12967961

ABSTRACT

MOTIVATION: A new method that uses support vector machines (SVMs) to predict protein secondary structure is described and evaluated. The study is designed to develop a reliable prediction method using an alternative technique and to investigate the applicability of SVMs to this type of bioinformatics problem. METHODS: Binary SVMs are trained to discriminate between two structural classes. The binary classifiers are combined in several ways to predict multi-class secondary structure. RESULTS: The average three-state prediction accuracy per protein (Q(3)) is estimated by cross-validation to be 77.07 +/- 0.26% with a segment overlap (Sov) score of 73.32 +/- 0.39%. The SVM performs similarly to the 'state-of-the-art' PSIPRED prediction method on a non-homologous test set of 121 proteins despite being trained on substantially fewer examples. A simple consensus of the SVM, PSIPRED and PROFsec achieves significantly higher prediction accuracy than the individual methods.


Subject(s)
Algorithms , Artificial Intelligence , Cluster Analysis , Models, Statistical , Proteins/chemistry , Sequence Alignment/methods , Sequence Analysis, Protein/methods , Benchmarking , Computing Methodologies , Pattern Recognition, Automated , Protein Structure, Secondary , Proteins/classification , Reproducibility of Results , Sensitivity and Specificity
6.
Clin Diagn Lab Immunol ; 5(4): 543-9, 1998 Jul.
Article in English | MEDLINE | ID: mdl-9665964

ABSTRACT

The effects of three resuscitation fluids, hydroxyethyl starch (HES), Haemaccel, and fresh autologous blood, on reticuloendothelial system phagocytic and catabolic functions and resistance to infection after 40% hemorrhages in BALB/c mice were studied. The mice, anesthetized with isoflurane, were bled over a 10-min period, left hypovolemic for 30 min, and then resuscitated with their shed blood or the same volume of asanguineous fluid. Normothermia was maintained throughout the experiments. The uptake and catabolism of intravenously injected double-labelled sheep erythrocytes (51Cr-125I-SRBC) in liver and spleen were determined at 1 and 48 h after hemorrhage. No significant changes in the uptake or catabolism of SRBC in liver or spleen were found at 1 h after hemorrhage and resuscitation with any of the fluids. However, at 48 h a significant increase in liver uptake of SRBC was seen in animals resuscitated with either Haemaccel or HES compared to that in animals resuscitated with shed blood or in animals subjected to a sham operation. The increase in liver uptake was accompanied by a small decrease in spleen uptake in animals resuscitated with Haemaccel but not with HES. No great changes in catabolic activity were seen at 48 h, although activity levels tended to be higher in animals resuscitated with Haemaccel. Separate groups of animals were challenged by an intraperitoneal injection with live Escherichia coli at 1 or 48 h after hemorrhage and resuscitation. Sixty-four percent of the animals resuscitated with shed blood survived the challenge with E. coli at 1 h after hemorrhage, whereas only 10 and 0% survival was seen for animals resuscitated with Haemaccel and HES, respectively. At 48 h survival was 80% for shed-blood-resuscitated animals and 60 and 70% for Haemaccel- and HES-resuscitated animals, respectively.


Subject(s)
Hemorrhage/therapy , Infections/etiology , Mononuclear Phagocyte System/physiopathology , Plasma Substitutes/adverse effects , Animals , Blood Transfusion, Autologous , Colloids , Erythrocytes/immunology , Escherichia coli Infections/etiology , Escherichia coli Infections/prevention & control , Hemorrhage/complications , Hemorrhage/physiopathology , Hydroxyethyl Starch Derivatives , Infection Control , Male , Mice , Mice, Inbred BALB C , Phagocytosis , Polygeline , Resuscitation , Sheep , Time Factors
7.
Shock ; 8(3): 219-24, 1997 Sep.
Article in English | MEDLINE | ID: mdl-9377170

ABSTRACT

Although the efficacy of colloid resuscitation fluids in restoring cardiovascular status in hemorrhagic shock is accepted, the effect they have on the activity of the reticuloendothelial system (RES) is less clear. As interaction with the RES may be important in determining susceptibility to infections after resuscitation the effects of three such fluids, hydroxyethyl starch, Haemaccel, and fresh autologous blood on RES function after a 40% hemorrhage have been investigated in BALB/C mice. The mice, anesthetized with isoflurane, were bled over a 10 min period, left hypovolemic for 30 min, and then resuscitated with their shed blood or the same volume of asanguineous fluid. Normothermia was maintained throughout the experiments. Whole body phagocytic activity was assessed at 1, 6, 24, 48, and 72 h after the end of hemorrhage by measuring the clearance rate (K) of intravenously injected 51Cr-labeled sheep red blood cells. No significant change in K was found at any time in animals resuscitated with shed blood. However, significant increases in K were found 48 h after resuscitation with Haemaccel. Hepatic uptake of sheep red blood cells was significantly increased at 48 and 72 h in Haemaccel-resuscitated animals compared with hydroxyethyl starch or shed blood resuscitation, whereas spleen uptake decreased at 72 h. Lung uptake was not affected at any time with any fluid. The same volume of Haemaccel had no significant effect either on K or on organ uptake when given to normovolemic animals. The changes in organ uptake after hemorrhage and resuscitation with Haemaccel were partially prevented if animals were resuscitated with Haemaccel plus autologous red cells.


Subject(s)
Hemorrhage/drug therapy , Mononuclear Phagocyte System/physiology , Phagocytosis , Polygeline/pharmacology , Resuscitation/methods , Animals , Antigens/pharmacology , Blood Pressure , Blood Transfusion , Body Weight , Fluid Therapy , Hematocrit , Hemorrhage/physiopathology , Hydroxyethyl Starch Derivatives/pharmacology , Liver/drug effects , Liver/physiology , Lung/drug effects , Male , Mice , Mice, Inbred BALB C , Mononuclear Phagocyte System/drug effects , Organ Size , Plasma Substitutes/pharmacology , Spleen/drug effects
8.
Med Sci Sports Exerc ; 29(7): 943-9, 1997 Jul.
Article in English | MEDLINE | ID: mdl-9243494

ABSTRACT

On two separate occasions, eight subjects controlled speed to run the greatest distance possible in 30 min in a hot, humid environment (ambient temperature 32 degrees C, relative humidity 60%). For the experimental test (precooling), exercise was preceeded by cold-water immersion. Precooling increased the distance run by 304 +/- 166 m (P < 0.05). Precooling decreased the pre-exercise rectal and mean skin temperature by 0.7 degrees C and 5.9 degrees C, respectively (P < 0.05). Rectal and mean skin temperature were decreased up to 20 and 25 min during exercise, respectively (P < 0.05). Mean body temperature decreased from 36.5 +/- 0.1 degrees C to 33.8 +/- 0.2 degrees C following precooling (P < 0.05) and remained lower throughout exercise (P < 0.01) and at the end of exercise (by 0.8 degrees C; P < 0.05). The rate of heat storage at the end of exercise increased from 113 +/- 45 to 249 +/- 55 W.m-2 (P < 0.005). Precooling lowered the heart rate at rest (13%), 5 (9%), and 10 min (10%) exercise (P < 0.05) and increased the end of exercise blood lactate from 4.9 +/- 0.5 to 7.4 +/- 0.9 mmol.L-1 (P < 0.01). The VO2 at 10 and 20 min of exercise and total body sweating are not different between tests. In conclusion, water immersion precooling increased exercise endurance in hot, humid conditions with an enhanced rate of heat storage and decreased thermoregulatory strain.


Subject(s)
Body Temperature , Hot Temperature , Humidity , Physical Endurance/physiology , Running/physiology , Adult , Body Temperature Regulation/physiology , Exercise Test , Female , Humans , Male
9.
Shock ; 7(4): 300-3, 1997 Apr.
Article in English | MEDLINE | ID: mdl-9110417

ABSTRACT

The effects of hypothermia and hemorrhage, alone and together, on reticuloendothelial system function have been studied in male BALB/c mice anesthetized with isoflurane. Whole body phagocytic activity was assessed at a deep body temperature (Tc) between 30 and 37 degrees C by measuring the clearance rate (K) of intravenously injected 51Cr-labeled sheep red blood cells (SRBC). There was a positive linear relationship between K and Tc. At a Tc of 30 degrees C splenic uptake of 51Cr-SRBC was reduced to approximately 50% of that at 37 degrees C, whilst liver and lung uptake were unaffected by the change in Tc. The hypothermia-induced reduction in K was rapidly reversed by rewarming to normothermia. A hemorrhage of 40% of measured blood volume followed after 30 min by return of the shed blood had no effect on K provided Tc was maintained at 37 degrees C. If Tc was allowed to fall to 30 degrees C during the hemorrhage, K was reduced to the same extent as in control hypothermic animals. There was also a tendency for uptake by liver, as well as spleen, to be reduced. These studies indicate that it is important to pay attention to core temperature when studying the effects of hemorrhage on aspects of reticuloendothelial function, at least in a small-animal model.


Subject(s)
Hemorrhage/physiopathology , Hypothermia/physiopathology , Mononuclear Phagocyte System/physiopathology , Animals , Antigens/metabolism , Antigens/pharmacology , Blood Pressure , Chromium Radioisotopes , Hemorrhage/complications , Hypothermia/complications , Liver/metabolism , Liver/physiopathology , Lung/metabolism , Lung/physiopathology , Male , Mice , Mice, Inbred BALB C , Phagocytosis/physiology , Resuscitation , Spleen/metabolism , Spleen/physiopathology , Temperature
10.
Article in English | MEDLINE | ID: mdl-9349651

ABSTRACT

The purpose of this investigation was to measure expired air temperature under cool- and hot-humid environmental conditions at rest and during prolonged exercise to: (1) establish if significant increases in body core temperature affected expired air temperature, and (2) to determine if the temperature setting for heating the pneumotachometer in an open-circuit system requires adjustment during prolonged exercise tests to account for changes in expired air temperature. Six male distance runners completed two tests in cool-humid [dry bulb temperature (Tdb) 15.5 (SD 1.3) degrees C, wet bulb temperature (TWb) 12.1 (SD 1.4) degrees C] and hot-humid [Tdb 31.6 (SD 0.6) degrees C, TWb 24.9 (SD 0.6) degrees C, black globe temperature (Tg) 34.3 (SD 0.3) degrees C] environments, running at a velocity corresponding to 65% [67.1 (SD 2.82)%] of their maximal oxygen uptake. Rectal temperature and expired air temperatures were compared at rest, and after 30 min and 60 min of exercise for each environment. The main finding of this investigation was a significant (P < 0.05) but small increase in expired air temperature between the 30-min and 60-min measures in the hot-humid environment. No significant differences in expired air temperature were found between the 30-min and 60-min measures in the cool-humid environment. These findings suggest that: (1) expired air temperature is influenced by elevations in body core temperature during prolonged exercise in hot-humid conditions, and (2) that the temperature setting for heating the head of the pneumotachometer (after determining the appropriate temperature through measuring expired air temperature for the set environmental condition) may require adjustment during prolonged exercise trials in hot-humid environmental conditions.


Subject(s)
Body Temperature/physiology , Exercise/physiology , Hot Temperature/adverse effects , Humidity/adverse effects , Adult , Humans , Male , Oxygen Consumption/physiology , Pulmonary Gas Exchange/physiology , Respiration/physiology , Running/physiology , Temperature
11.
Clin Orthop Relat Res ; (252): 299-306, 1990 Mar.
Article in English | MEDLINE | ID: mdl-2406070

ABSTRACT

The overall biocompatibility characteristics of metallic implants are important considerations in orthopedic surgery. A review of the literature shows very few reports of neoplasms in association with metallic implants. This case report demonstrates osteogenic sarcoma at the site of a Smith-Petersen nail that had been implanted for nine years in a 65-year-old woman for fixation of a femoral neck fracture. Gross examination revealed debris at the tumor site, with a concentration of 14 ppm of nickel within the tumor tissue. Experimental investigations support the possibility of neoplastic induction by heavy metals, particularly cobalt, cadmium, and nickel. Circumstantial evidence shows osteogenic sarcoma that developed at the site of this device, possibly in response to metal or factors at the site of metal.


Subject(s)
Femoral Neoplasms/chemically induced , Metals/adverse effects , Osteosarcoma/chemically induced , Prostheses and Implants/adverse effects , Aged , Alloys/adverse effects , Bone Nails/adverse effects , Female , Femoral Neoplasms/analysis , Humans , Osteosarcoma/analysis , Spectrophotometry, Atomic
13.
Foot Ankle ; 8(5): 248-53, 1988 Apr.
Article in English | MEDLINE | ID: mdl-3284799

ABSTRACT

Since tendon transplantation relies on successful fixation of the tendon transplant, a quantitative comparison of various methods of tendon attachment to bone was investigated in mongrel dogs. The methods included attaching tendon to periosteum, suturing a tendon to itself after passing through bone, stapling, and wedging a dowel plug into a hole with the tendon. Tests to failure were conducted at 0, 10, 28, and 63 days of healing. The dowel plug technique provided strong immediate fixation. After 63 days the staple, the tendon passed through bone, and the dowel plug techniques showed significant increases in strength. On tendons of similar size, the dowel plug method showed the greatest tensile strength when compared to the staple fixation. This method was a simple, reproducible technique.


Subject(s)
Bone and Bones/surgery , Suture Techniques , Tendon Transfer/methods , Animals , Dogs , Surgical Staplers , Surgical Wound Infection/etiology , Tensile Strength
15.
Respir Care ; 30(4): 250-5, 1985 Apr.
Article in English | MEDLINE | ID: mdl-10315658

ABSTRACT

Ten patients with known but clinically stable chronic obstructive pulmonary disease (COPD) were studied while breathing low-flow (1-2 L/min) supplemental oxygen by nasal cannula and by biflow nasal mask. Although the increase in inspired oxygen when breathing with the cannula has been documented, the nasal mask has not been tested by measurement of PaO2 change. The mean age of the group was 64.6 years, and their mean PaO2 was 54 +/- 10.5 torr while they were at rest and breathing room air. Patients were each given oxygen alternately with the mask and cannula, with no change in flowrate; time was allowed between the two for equilibration and return to baseline values. PaO2 values were compared by t test for nonindependent samples, which provided a t value of 1.893, with P = 0.09. Differences in measured arterial saturation (SaO2) and PaCO2 also proved to be insignificant when patients breathed via the two devices. The conclude that the nasal cannula and the biflow nasal mask produce comparable PaO2 in patients who may need low-flow supplemental oxygen at rest. The mask can be considered an alternative oxygen appliance if preferred by patients because of comfort.


Subject(s)
Oxygen Inhalation Therapy/instrumentation , Masks
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