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1.
Nat Commun ; 9(1): 3971, 2018 09 28.
Article in English | MEDLINE | ID: mdl-30266969

ABSTRACT

Terpenes constitute the largest and structurally most diverse natural product family. Most terpenoids exhibit a stereochemically complex macrocyclic core, which is generated by C-C bond forming of aliphatic oligo-prenyl precursors. This reaction is catalysed by terpene synthases (TPSs), which are capable of chaperoning highly reactive carbocation intermediates through an enzyme-specific reaction. Due to the instability of carbocation intermediates, the proteins' structural dynamics and enzyme:substrate interactions during TPS catalysis remain elusive. Here, we present the structure of the diterpene synthase CotB2, in complex with an in crystallo cyclised abrupt reaction product and a substrate-derived diphosphate. We captured additional snapshots of the reaction to gain an overview of CotB2's catalytic mechanism. To enhance insights into catalysis, structural information is augmented with multiscale molecular dynamic simulations. Our data represent fundamental TPS structure dynamics during catalysis, which ultimately enable rational engineering towards tailored terpene macrocycles that are inaccessible by conventional chemical synthesis.


Subject(s)
Alkyl and Aryl Transferases/chemistry , Bacterial Proteins/chemistry , Diterpenes/chemistry , Molecular Dynamics Simulation , Alkyl and Aryl Transferases/genetics , Alkyl and Aryl Transferases/metabolism , Bacterial Proteins/genetics , Bacterial Proteins/metabolism , Biocatalysis , Crystallography, X-Ray , Cyclization , Diterpenes/metabolism , Models, Chemical , Molecular Structure , Mutation
2.
J Med Chem ; 59(18): 8381-97, 2016 09 22.
Article in English | MEDLINE | ID: mdl-27556704

ABSTRACT

Natural products found in Mitragyna speciosa, commonly known as kratom, represent diverse scaffolds (indole, indolenine, and spiro pseudoindoxyl) with opioid activity, providing opportunities to better understand opioid pharmacology. Herein, we report the pharmacology and SAR studies both in vitro and in vivo of mitragynine pseudoindoxyl (3), an oxidative rearrangement product of the corynanthe alkaloid mitragynine. 3 and its corresponding corynantheidine analogs show promise as potent analgesics with a mechanism of action that includes mu opioid receptor agonism/delta opioid receptor antagonism. In vitro, 3 and its analogs were potent agonists in [(35)S]GTPγS assays at the mu opioid receptor but failed to recruit ß-arrestin-2, which is associated with opioid side effects. Additionally, 3 developed analgesic tolerance more slowly than morphine, showed limited physical dependence, respiratory depression, constipation, and displayed no reward or aversion in CPP/CPA assays, suggesting that analogs might represent a promising new generation of novel pain relievers.


Subject(s)
Analgesics, Opioid/pharmacology , Receptors, Opioid, delta/antagonists & inhibitors , Receptors, Opioid, mu/agonists , Secologanin Tryptamine Alkaloids/pharmacology , beta-Arrestin 2/metabolism , Analgesics, Opioid/chemistry , Animals , Cell Line , Humans , Male , Mice , Mitragyna/chemistry , Molecular Docking Simulation , Receptors, Opioid, delta/metabolism , Receptors, Opioid, mu/metabolism , Secologanin Tryptamine Alkaloids/chemistry
3.
Environ Sci Technol ; 43(20): 7699-705, 2009 Oct 15.
Article in English | MEDLINE | ID: mdl-19921881

ABSTRACT

The expanding use of manufactured nanoparticles has increased the potential for their release into the natural environment. Particularly, TiO2 nanoparticles pose significant exposure risk to humans and other living species due to their extensive use in a wide range of fields. To better understand the environmental and health risks associated with the release of TiO2 nanoparticles, knowledge on their fate and transport is needed. This study evaluates the transport of two different TiO2 nanoparticles: one commercially available (P25 TiO2 and the other synthesized at a lab scale (synthesized TiO2). Laboratory flume, column, and batch experiments were conducted to investigate the processes dominating the transport of TiO2 nanoparticles between streams and streambeds and to characterize the properties of these nanoparticles under different physicochemical conditions. Results show that the synthesized TiO2 was more stable compared to the P25 TiO2, which underwent significant aggregation under the same experimental conditions. As a result, P25 TiO2 deposited at a faster rate than the synthesized TiO2 in the streambed. Both types of TiO2 nanoparticles deposited in the streambed were easily released when the stream velocity was increased. The aggregation and deposition of P25 TiO2 were highly dependent on pH. A process-based colloid exchange model was applied to interpret the observed transport behavior of the TiO2 nanoparticles.


Subject(s)
Geologic Sediments/chemistry , Nanoparticles/chemistry , Rivers/chemistry , Titanium/chemistry , Colloids/chemistry , Models, Chemical
4.
J Athl Train ; 39(3): 259-262, 2004 Sep.
Article in English | MEDLINE | ID: mdl-15496996

ABSTRACT

OBJECTIVE: Despite widespread use of skinfolds to estimate body fatness, few prediction models have been validated on female athletes. Most skinfold models have been validated with hydrodensitometry, which does not account for the variability in bone density that may exist among female athletes. Our purpose was to develop a skinfold model that predicts fat-free mass (FFM) in female collegiate athletes. DESIGN AND SETTING: A skinfold model was developed using dual-energy x-ray absorptiometry (DEXA) as the criterion method. Four skinfold measures (abdominal, suprailiac, thigh, triceps), height, and weight were entered into a regression model. The best model was developed and validated by calculating the predicted error sum of squares statistic. SUBJECTS: Study participants included 101 National Collegiate Athletic Association Division I female athletes (age = 20.3 +/- 1.4 years, height = 166.7 +/- 7.8 cm, mass = 63.1 +/- 8.1 kg) from several sports. MEASUREMENTS: Each participant's FFM was measured via DEXA. Skinfold thicknesses were measured and entered into the regression model. RESULTS: The final regression model included mass and abdominal and thigh skinfolds: FFM = 8.51 + (0.809 x mass) - (0.178 x abdominal skinfold) - (0.225 x thigh skinfold). The model showed excellent predictive ability (R = 0.98, standard error of the estimate = 1.1 kg). Pairwise comparisons indicated that prediction error showed no overprediction or underprediction bias. CONCLUSIONS: In female collegiate athletes, FFM can be predicted accurately from body mass and abdominal and thigh skinfolds. This model is practical and can be used in most athletic settings.

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