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1.
Int J Mol Sci ; 25(10)2024 May 14.
Article in English | MEDLINE | ID: mdl-38791402

ABSTRACT

Alkaloids are natural compounds useful as scaffolds for discovering new bioactive molecules. This study utilized alkaloid gramine to synthesize two groups of C3-substituted indole derivatives, which were either functionalized at N1 or not. The compounds were characterized by spectroscopic methods. The protective effects of the new compounds against in vitro oxidative hemolysis induced by standard oxidant 2,2'-azobis(2-amidinopropane dihydro chloride (AAPH) on human erythrocytes as a cell model were investigated. Additionally, the compounds were screened for antimicrobial activity. The results indicated that most of the indole derivatives devoid of the N1 substitution exhibited strong cytoprotective properties. The docking studies supported the affinities of selected indole-based ligands as potential antioxidants. Furthermore, the derivatives obtained exhibited potent fungicidal properties. The structures of the eight derivatives possessing indole moiety bridged to the imidazole-, benzimidazole-, thiazole-, benzothiazole-, and 5-methylbenzothiazoline-2-thiones were determined by X-ray diffraction. The C=S bond lengths in the thioamide fragment pointed to the involvement of zwitterionic structures of varying contribution. The predominance of zwitterionic mesomers may explain the lack of cytoprotective properties, while steric effects, which limit multiple the hydrogen-bond acceptor properties of a thione sulfur, seem to be responsible for the high hemolytic activity.


Subject(s)
Erythrocytes , Hemolysis , Indoles , Humans , Hemolysis/drug effects , Indoles/chemistry , Indoles/pharmacology , Erythrocytes/drug effects , Molecular Docking Simulation , Anti-Infective Agents/pharmacology , Anti-Infective Agents/chemistry , Structure-Activity Relationship , Antioxidants/pharmacology , Antioxidants/chemistry , Microbial Sensitivity Tests , Cytoprotection/drug effects , Amidines
2.
Molecules ; 28(10)2023 May 16.
Article in English | MEDLINE | ID: mdl-37241873

ABSTRACT

The ability of the indole-imidazole hybrid ligands to coordinate with the Zn(II) ion and the resulting structures of this new class of coordination compounds were analyzed in order to determine their structural properties and biological functionalities. For this purpose, six novel Zn(II) complexes, [Zn(InIm)2Cl2] (1), [Zn(InMeIm)2Cl2] (2), [Zn(IniPrIm)2Cl2] (3), [Zn(InEtMeIm)2Cl2] (4), [Zn(InPhIm)2Cl2] (5) and [Zn2(InBzIm)2Cl2] (6) (where InIm is 3-((1H-imidazol-1-yl)methyl)-1H-indole), were synthesized by the reactions of ZnCl2 and the corresponding ligand in a 1:2 molar ratio in methanol solvent at an ambient temperature. The structural and spectral characterization of these complexes was performed using NMR, FT-IR and ESI-MS spectrometry and elemental analysis, and the crystal structures of 1-5 were determined using single-crystal X-ray diffraction. Complexes 1-5 form polar supramolecular aggregates by utilizing, for this purpose, the N-H(indole)∙∙∙Cl(chloride) intermolecular hydrogen bonds. The assemblies thus formed differ depending on the distinctive molecular shape, which can be either compact or extended. All complexes were screened for their hemolytic, cytoprotective, antifungal, and antibacterial activities. The results show that the cytoprotective activity of the indole/imidazole ligand significantly increases upon its complexation with ZnCl2 up to a value comparable with the standard antioxidant Trolox, while the response of its substituted analogues is diverse and less pronounced.


Subject(s)
Coordination Complexes , Zinc , Zinc/chemistry , Ligands , Spectroscopy, Fourier Transform Infrared , Imidazoles , Indoles , Coordination Complexes/pharmacology , Coordination Complexes/chemistry
3.
Molecules ; 28(2)2023 Jan 10.
Article in English | MEDLINE | ID: mdl-36677766

ABSTRACT

In the search for new bioactive compounds, a methodology based on combining two molecules with biological properties into a new hybrid molecule was used to design and synthesize of a series of ten indole derivatives bearing imidazole, benzothiazole-2-thione, or benzoxazole-2-thione moieties at the C-3 position. The compounds were spectroscopically characterized and tested for their antioxidant, antibacterial, and fungicidal activities. The crystal structures were determined for five of them. Comparison of the closely related structures containing either benzothiazole-2-thione or benzoxazole-2-thione clearly shows that the replacement of -S- and -O- ring atoms modify molecular conformation in the crystal, changes intermolecular interactions, and has a severe impact on biological activity. The results indicate that indole-imidazole derivatives with alkyl substituent exhibit an excellent cytoprotective effect against AAPH-induced oxidative hemolysis and act as effective ferrous ion chelating agents. The indole-imidazole compound with chlorine atoms inhibited the growth of fungal strains: Coriolus versicolor (Cv), Poria placenta (Pp), Coniophora puteana (Cp), and Gloeophyllum trabeum (Gt). The indole-imidazole derivatives showed the highest antibacterial activity, for which the largest growth-inhibition zones were noted in M. luteus and P. fluorescens cultures. The obtained results may be helpful in the development of selective indole derivatives as effective antioxidants and/or antimicrobial agents.


Subject(s)
Antioxidants , Thiones , Antioxidants/pharmacology , Thiones/chemistry , Benzoxazoles/chemistry , Imidazoles/pharmacology , Anti-Bacterial Agents/chemistry , Benzothiazoles/chemistry , Antifungal Agents/pharmacology , Indoles/pharmacology , Molecular Structure
4.
Sci Rep ; 11(1): 15425, 2021 07 29.
Article in English | MEDLINE | ID: mdl-34326403

ABSTRACT

A series of fifteen indole derivatives substituted at the C-3 position were synthesized and characterized. The antioxidant activity of all derivatives was investigated by three in vitro antioxidant assays, and the derivative with pyrrolidinedithiocarbamate moiety was the most active as a radical scavenger and Fe3+-Fe2+ reducer. It can be stated that possible hydrogen and electron transfer mechanism is suggested for the quenching of the free radical. Moreover, the indolyl radical stabilization and the presence of unsubstituted indole nitrogen atom are mandatory for the observed antioxidant activity, which strongly depends on the type of the substituent directly connected to the methylene group at the C-3 position. Human red blood cells (RBC) have been used as a cell model to study derivatives interaction with the cell membrane. Haemolytic activity and RBC shape transformation were observed for certain derivatives in a concentration-dependent manner. However, most of the derivatives at sublytic concentration showed high cytoprotective activity against oxidative haemolysis induced by 2,2'-azobis(2-methylpropionamidine) dihydrochloride (AAPH). The cytoprotective properties of derivatives can be explained mostly due to their interactions with the RBC membrane components. Taking together, theoretical estimations and experimental data confirm the beneficial interactions between the selected C-3 substituted indole derivatives and the RBC membrane under oxidative stress conditions. These results encourage us to further structural optimization of C-3 substituted indole derivatives as potent antioxidant compounds.

5.
J Inorg Biochem ; 208: 111089, 2020 07.
Article in English | MEDLINE | ID: mdl-32442762

ABSTRACT

Three novel Zn(II) complexes, [ZnCl2(qz)2] (1), [ZnCl2(1,5-naph)]n (2) and [ZnCl2(4,7-phen)2] (3), where qz is quinazoline, 1,5-naph is 1,5-naphthyridine and 4,7-phen is 4,7-phenanthroline, were synthesized by the reactions of ZnCl2 and the corresponding N-heterocyclic ligand in 1:2 molar ratio in ethanol at ambient temperature. The characterization of these complexes was done by NMR, IR and UV-Vis spectroscopy, and their crystal structures were determined by single-crystal X-ray diffraction analysis. Complexes 1 and 3 are mononuclear species, in which Zn(II) ion is tetrahedrally coordinated by two nitrogen atoms belonging to two qz or 4,7-phen ligands, respectively, and by two chloride anions, while complex 2 is a 1D coordination polymer that contains 1,5-naph as bridging ligand between two metal ions. In agar disc-diffusion assay, complexes 1-3 manifested good inhibitory activity against two investigated Candida strains (C. albicans and C. parapsilosis), while not inducing toxic effects on the healthy human fibroblast cell line (MRC-5). This activity was not fungicidal, as revealed by the broth microdilution assay, however complex 3 showed the ability to modulate Candida hyphae formation, which is an important process during infection and showed significant synergistic effect with clinically used antifungal polyene nystatin.


Subject(s)
Antifungal Agents , Candida albicans/growth & development , Candida parapsilosis/growth & development , Coordination Complexes , Heterocyclic Compounds , Nystatin , Zinc , Antifungal Agents/chemical synthesis , Antifungal Agents/chemistry , Antifungal Agents/pharmacology , Cell Line, Tumor , Coordination Complexes/agonists , Coordination Complexes/chemical synthesis , Coordination Complexes/chemistry , Coordination Complexes/pharmacology , Drug Synergism , Heterocyclic Compounds/agonists , Heterocyclic Compounds/chemistry , Heterocyclic Compounds/pharmacology , Humans , Nystatin/agonists , Nystatin/chemistry , Nystatin/pharmacology , Zinc/agonists , Zinc/chemistry , Zinc/pharmacology
6.
RSC Adv ; 10(72): 44481-44493, 2020 Dec 09.
Article in English | MEDLINE | ID: mdl-35517158

ABSTRACT

A series of mononuclear gold(iii) complexes of the general formula [AuCl3(diazanaphthalene)], where diazanaphthalene is quinazoline (qz, 1), phthalazine (phtz, 2), 1,5-naphthyridine (1,5-naph, 3), 1,6-naphthyridine (1,6-naph, 4) or 1,8-naphthyridine (1,8-naph, 5), were prepared and fully characterized. The complexes 1-5 consist of discrete monomeric species with the Au(iii) cation in a square planar coordination geometry surrounded by three chloride anions and one diazanaphthalene ligand. Crystallographic studies indicate the presence of an extended 4 + 1 or 4 + 2 geometry around the square planar [AuCl3(diazanaphthalene)] center due to Au⋯Cl and Au⋯N interactions. The crystal structures of these complexes are controlled by a variety of intermolecular interactions that utilize the amphiphilic properties of the coordinated chloride anions and involve C-H groups, π-electrons, and an uncoordinated nitrogen atom of the diazanaphthalene ligand. The usual offset π-stacking between the N-heteroaromatic ligands appears to be completely hindered between the 1,5-naph fragments and significantly weakened between the 1,6-naph and 1,8-naph in their respective complexes 3, 4 and 5, for which the average molecular polarizability (α) values are the lowest in the series. It is remarkable that the [AuCl3(benzodiazine)] complexes 1 and 2 form centrosymmetric crystals, but the [AuCl3(naphthyridine)] complexes 3-5 assemble into non-centrosymmetric aggregates, making them potential alternatives to the previously studied systems for application in various fields by taking advantage of their polarity.

7.
Bioinorg Chem Appl ; 2018: 3294948, 2018.
Article in English | MEDLINE | ID: mdl-29853829

ABSTRACT

Dinuclear platinum(II) complexes, [{Pt(en)Cl}2(µ-qx)]Cl2·2H2O (1), [{Pt(en)Cl}2(µ-qz)](ClO4)2 (2), and [{Pt(en)Cl}2(µ-phtz)]Cl2·4H2O (3), were synthesized and characterized by different spectroscopic techniques. The crystal structure of 1 was determined by single-crystal X-ray diffraction analysis, while the DFT M06-2X method was applied in order to optimize the structures of 1-3. The chlorido Pt(II) complexes 1-3 were converted into the corresponding aqua species 1a-3a, and their reactions with an equimolar amount of Ac-L-Met-Gly and Ac-L-His-Gly dipeptides were studied by 1H NMR spectroscopy in the pH range 2.0 < pH < 2.5 at 37°C. It was found that, in all investigated reactions with the Ac-L-Met-Gly dipeptide, the cleavage of the Met-Gly amide bond had occurred, but complexes 2a and 3a showed lower catalytic activity than 1a. However, in the reactions with Ac-L-His-Gly dipeptide, the hydrolysis of the amide bond involving the carboxylic group of histidine was observed only with complex 1a. The observed disparity in the catalytic activity of these complexes is thought to be due to different relative positioning of nitrogen atoms in the bridging qx, qz, and phtz ligands and consequent variation in the intramolecular separation of the two platinum(II) metal centers.

8.
Chemistry ; 24(23): 6041-6046, 2018 Apr 20.
Article in English | MEDLINE | ID: mdl-29486101

ABSTRACT

Substituted 2,4- and 4,6-dihydroxyisophthalaldehydes were condensed with optically pure and racemic trans-1,2-diaminocyclohexane to form resorcinarene-like polyimine macrocycles (resorcinsalens), the structure and stoichiometry of which were controlled by the choice of the reaction medium. Particularly, the cyclocondensation reactions were driven by the solubility, tautomerization, or by social self-sorting. The resorcinsalens crystallized as inclusion compounds, in which the guest molecules were situated either in channels or in voids. In the highly hydrated crystals of one of the [2+2] macrocycles and chloroform-solvated crystals of a [4+4] product the channels were interconnected, as in zeolites, enabling possible migration of loosely bound solvent molecules in three dimensions. The association mode depended on the structural modification of the host molecule and the type of included solvent molecule(s).


Subject(s)
Calixarenes/chemical synthesis , Phenylalanine/analogs & derivatives , Calixarenes/chemistry , Cyclohexylamines/chemistry , Models, Molecular , Molecular Structure , Phenylalanine/chemical synthesis , Phenylalanine/chemistry , Phthalic Acids/chemistry , Solvents , Stereoisomerism
9.
J Inorg Biochem ; 174: 156-168, 2017 09.
Article in English | MEDLINE | ID: mdl-28675847

ABSTRACT

Gold(III) complexes with 1,7- and 4,7-phenanthroline ligands, [AuCl3(1,7-phen-κN7)] (1) and [AuCl3(4,7-phen-κN4)] (2) were synthesized and structurally characterized by spectroscopic (NMR, IR and UV-vis) and single-crystal X-ray diffraction techniques. In these complexes, 1,7- and 4,7-phenanthrolines are monodentatedly coordinated to the Au(III) ion through the N7 and N4 nitrogen atoms, respectively. In comparison to the clinically relevant anti-angiogenic compounds auranofin and sunitinib, gold(III)-phenanthroline complexes showed from 1.5- to 20-fold higher anti-angiogenic potential, and 13- and 118-fold lower toxicity. Among the tested compounds, complex 1 was the most potent and may be an excellent anti-angiogenic drug candidate, since it showed strong anti-angiogenic activity in zebrafish embryos achieving IC50 value (concentration resulting in an anti-angiogenic phenotype at 50% of embryos) of 2.89µM, while had low toxicity with LC50 value (the concentration inducing the lethal effect of 50% embryos) of 128µM. Molecular docking study revealed that both complexes and ligands could suppress angiogenesis targeting the multiple major regulators of angiogenesis, such as the vascular endothelial growth factor receptor (VEGFR-2), the matrix metalloproteases (MMP-2 and MMP-9), and thioredoxin reductase (TrxR1), where the complexes showed higher binding affinity in comparison to ligands, and particularly to auranofin, but comparable to sunitinib, an anti-angiogenic drug of clinical relevance.


Subject(s)
Angiogenesis Inhibitors/chemistry , Auranofin/chemistry , Indoles/chemistry , Matrix Metalloproteinase 2/chemistry , Matrix Metalloproteinase 9/chemistry , Molecular Docking Simulation , Phenanthrolines/chemistry , Pyrroles/chemistry , Thioredoxin Reductase 1/chemistry , Vascular Endothelial Growth Factor Receptor-2/chemistry , A549 Cells , Animals , HeLa Cells , Humans , Sunitinib , Zebrafish
10.
Chemphyschem ; 18(16): 2197-2207, 2017 Aug 18.
Article in English | MEDLINE | ID: mdl-28544199

ABSTRACT

The benzhydryl (diphenylmethyl) group is a molecular propeller that can act as a chirality reporter if it is introduced nearby a stereogenic center by making an ether bond. The hydrophobic character of the benzhydryl group allows transformation of insoluble natural tartaric acid derivatives into soluble entities in a nonpolar environment. Electronic circular dichroism spectra, recorded within the short-wavelength region of the phenyl 1 B transitions (190-200 nm) shows strong bisignate Cotton effects. The signs and magnitudes of these Cotton effects are a function of absolute configuration and conformation of the molecule and do not primarily arise from exciton coupling of chiral benzhydryl chromophores. In crystals, the main-chain conformation is stabilized by intramolecular hydrogen bonds and CH-CO dipolar interactions. The number of the donor NH groups has a pronounced effect on the preferred conformations and inclusion properties of benzhydryl-(R,R)-tartaric acid diamides. Evidence is shown for the solvent dependency of the conformations of NH amides of tartaric acid diphenylmethyl ethers.

11.
Dalton Trans ; 46(8): 2594-2608, 2017 Feb 21.
Article in English | MEDLINE | ID: mdl-28155927

ABSTRACT

Gold(iii) complexes with different l-histidine-containing dipeptides, [Au(Gly-l-His-NA,NP,N3)Cl]Cl·3H2O (1a), [Au(Gly-l-His-NA,NP,N3)Cl]NO3·1.25H2O (1b), [Au(l-Ala-l-His-NA,NP,N3)Cl][AuCl4]·H2O (2a), [Au(l-Ala-l-His-NA,NP,N3)Cl]NO3·2.5H2O (2b), [Au(l-Val-l-His-NA,NP,N3)Cl]Cl·2H2O (3), [Au(l-Leu-l-His-NA,NP,N3)Cl]Cl (4a) and [Au(l-Leu-l-His-NA,NP,N3)Cl][AuCl4]·H2O (4b), have been synthesized and structurally characterized by spectroscopic (1H NMR, IR and UV-vis) and single-crystal X-ray diffraction techniques. The antimicrobial efficiency of these gold(iii) complexes, along with K[AuCl4] and the corresponding dipeptides, was evaluated against the broad panel of Gram-positive and Gram-negative bacteria and fungi, displaying their moderate inhibiting activity. Moreover, the cytotoxic properties of the investigated complexes were assessed against the normal human lung fibroblast cell line (MRC5) and two human cancer, cervix (HeLa) and lung (A549) cell lines. None of the complexes exerted significant cytotoxic activity; nevertheless complexes that did show selectivity in terms of cancer vs. normal cell lines (2a/b and 4a/b) have been evaluated using zebrafish (Danio rerio) embryos for toxicity and antiangiogenic potential. Although the gold(iii) complexes achieved an antiangiogenic effect comparable to the known angiogenic inhibitors auranofin and sunitinib malate at 30-fold higher concentrations, they had no cardiovascular side effects, which commonly accompany auranofin and sunitinib malate treatment. Finally, binding of the gold(iii) complexes to the active sites of both human and bacterial (Escherichia coli) thioredoxin reductases (TrxRs) was demonstrated by conducting a molecular docking study, suggesting that the mechanism of biological action of these complexes can be associated with their interaction with the TrxR active site.


Subject(s)
Dipeptides/chemistry , Gold/chemistry , Histidine/chemistry , Organometallic Compounds/chemistry , Organometallic Compounds/pharmacology , Anti-Infective Agents/chemical synthesis , Anti-Infective Agents/chemistry , Anti-Infective Agents/metabolism , Anti-Infective Agents/pharmacology , Antineoplastic Agents/chemical synthesis , Antineoplastic Agents/chemistry , Antineoplastic Agents/metabolism , Antineoplastic Agents/pharmacology , Catalytic Domain , Escherichia coli/enzymology , Humans , Molecular Docking Simulation , Organometallic Compounds/chemical synthesis , Organometallic Compounds/metabolism , Thioredoxin-Disulfide Reductase/chemistry , Thioredoxin-Disulfide Reductase/metabolism
12.
Bioorg Med Chem Lett ; 26(16): 3994-8, 2016 08 15.
Article in English | MEDLINE | ID: mdl-27400888

ABSTRACT

A series of nine thio-caffeine analogues were synthesized and characterised by NMR, FT-IR and MS spectroscopic methods. Molecular structures of four of them were determined using single crystal X-ray diffraction methods. The antioxidant properties of all compounds, at concentration ranges from 0.025 to 0.1mg/mL, were evaluated by various chemical- and cell-based antioxidant assays. Human erythrocytes were used to examine in vitro haemolytic activity of all compounds and their protective effect against oxidative haemolysis induced by AAPH, one of the commonly used free radical generator. All compounds studied showed no effect on the human erythrocytes membrane structure and permeability with the exception of 8-(phenylsulfanyl)caffeine. Among the nine caffeine thio-analogues tested, the newly synthesized 8-[(pyrrolidin-1-ylcarbonothioyl)sulfanyl]caffeine possessed exceptionally high antioxidant properties. Moreover, it protects human erythrocytes against AAPH-induced oxidative damage as efficiently as the standard antioxidant Trolox. Therefore, 8-[(pyrrolidin-1-ylcarbonothioyl)sulfanyl]caffeine may have a significant cytoprotective potential caused by its antioxidant activity.


Subject(s)
Antioxidants/chemistry , Caffeine/chemistry , Protective Agents/chemistry , Sulfhydryl Compounds/chemistry , Antioxidants/chemical synthesis , Antioxidants/pharmacology , Caffeine/chemical synthesis , Caffeine/pharmacology , Crystallography, X-Ray , Erythrocytes/cytology , Erythrocytes/drug effects , Erythrocytes/metabolism , Hemolysis/drug effects , Humans , Magnetic Resonance Spectroscopy , Mass Spectrometry , Molecular Conformation , Protective Agents/chemical synthesis , Protective Agents/pharmacology , Spectroscopy, Fourier Transform Infrared
13.
Spectrochim Acta A Mol Biomol Spectrosc ; 128: 773-80, 2014 Jul 15.
Article in English | MEDLINE | ID: mdl-24699296

ABSTRACT

The selenoanalogue of nicotine has been synthesized and characterized by spectroscopic and X-ray diffraction methods. The crystals of selenonicotine are isomorphic with the thionicotine homologue and consist of molecules engaged in columnar π⋯π stacking interactions between antiparallely arranged pyridine moieties. These interactions, absent in other crystals containing nicotine fragments, seem to be induced by the presence of a lactam group. The molecular structures in the vacuum of the oxo-, thio- and selenonicotine homologues have been calculated by the DFT method and compared with the available X-ray data. The delocalized structure of thionicotine is stabilized by intramolecular C-H⋯S hydrogen bond, which becomes weaker in the partial zwitterionic resonance structure of selenonicotine in favor of multiple C-H⋯Se intermolecular hydrogen-bonds. The calculated data allow a complete assignment of vibration modes in the solid state FTIR spectra. The (1)H and (13)C NMR chemical shifts were calculated by the GIAO method with B3LYP/6-311G(3df) level. A comparison between experimental and calculated theoretical results indicates that the density functional B3LYP method provided satisfactory results for predicting FTIR, (1)H, (13)C NMR spectra properties.


Subject(s)
Lactams/chemistry , Lactams/chemical synthesis , Models, Molecular , Nicotine/chemistry , Nicotine/chemical synthesis , Magnetic Resonance Spectroscopy , Molecular Structure , Spectroscopy, Fourier Transform Infrared , X-Ray Diffraction
14.
Chem Commun (Camb) ; 49(25): 2524-6, 2013 Mar 28.
Article in English | MEDLINE | ID: mdl-23422938

ABSTRACT

An exceptionally large size cuboctahedral imine cage is obtained from small size organic molecules in a thermodynamically driven [8+12] cyclocondensation. This is a demonstration of the role of entropy of symmetry as a driving force in reversible reactions.

15.
Molecules ; 17(3): 2567-78, 2012 Mar 02.
Article in English | MEDLINE | ID: mdl-22388967

ABSTRACT

The facile preparation of a racemic hydrazine bridged diphosphonium compound possessing a ring system analogous to bicyclo[3.3.2]decane is reported. Although the reaction yield is low, the structure of the compound, which possesses an eight-membered ring, two phosphonium cationic centers, a biimino bridge, molecular chirality and two fused aromatic rings locked into roughly perpendicular planes is unusual. The compound displays substantial biological activity in the brine shrimp test and cleaves plasmid DNA.


Subject(s)
Bridged Bicyclo Compounds/chemical synthesis , Cytotoxins/chemical synthesis , Animals , Artemia/drug effects , Bridged Bicyclo Compounds/chemistry , Bridged Bicyclo Compounds/pharmacology , Crystallography, X-Ray , Cytotoxins/chemistry , Cytotoxins/pharmacology , DNA Cleavage , DNA, Circular/chemistry , Lethal Dose 50 , Magnetic Resonance Spectroscopy , Models, Molecular , Molecular Conformation , Molecular Structure , Plasmids/chemistry
16.
J Phys Chem A ; 116(1): 680-8, 2012 Jan 12.
Article in English | MEDLINE | ID: mdl-22145745

ABSTRACT

Selected guaianolide type sesquiterpene lactones were studied combining solution and solid-state NMR spectroscopy with theoretical calculations of the chemical shifts in both environments and with the X-ray data. The experimental (1)H and (13)C chemical shifts in solution were successfully reproduced by theoretical calculations (with the GIAO method and DFT B3LYP 6-31++G**) after geometry optimization (DFT B3LYP 6-31 G**) in vacuum. The GIPAW method was used for calculations of solid-state (13)C chemical shifts. The studied cases involved two polymorphs of helenalin, two pseudopolymorphs of 6α-hydroxydihydro-aromaticin and two cases of multiple asymmetric units in crystals: one in which the symmetry-independent molecules were connected by a series of hydrogen bonds (geigerinin) and the other in which the symmetry-independent molecules, deprived of any specific intermolecular interactions, differed in the conformation of the side chain (badkhysin). Geometrically different molecules present in the crystal lattices could be easily distinguished in the solid-state NMR spectra. Moreover, the experimental differences in the (13)C chemical shifts corresponding to nuclei in different polymorphs or in geometrically different molecules were nicely reproduced with the GIPAW calculations.


Subject(s)
Lactones/chemistry , Models, Molecular , Sesquiterpenes, Guaiane/chemistry , Crystallography, X-Ray , Hydrogen Bonding , Magnetic Resonance Spectroscopy , Molecular Structure , Quantum Theory , Solutions , Stereoisomerism , Thermodynamics
17.
Dalton Trans ; 39(38): 8906-13, 2010 Oct 14.
Article in English | MEDLINE | ID: mdl-20725685

ABSTRACT

Monocationic gold(III) complexes with histidine-containing peptides, glycyl-L-histidine (Gly-L-His) and L-alanyl-L-histidine (L-Ala-L-His) have been synthesized and characterized by (1)H NMR spectroscopy and X-ray crystallography. The crystallized Au(III) complexes, [Au(Gly-L-His-N,N',N'')Cl]NO(3)·1.25H(2)O and [Au(L-Ala-L-His-N,N',N'')Cl]NO(3)·2.5H(2)O, were obtained from water solution at pH < 1.0. The chemical shifts in the (1)H NMR spectra of [Au(Gly-L-His-N,N',N'')Cl]NO(3)·1.25H(2)O and [Au(L-Ala-L-His-N,N',N'')Cl]NO(3)·2.5H(2)O complexes were compared with those for the corresponding Pd(II) complexes and for Pd(II) and Au(III) complexes with Gly-Gly-L-His tripeptide. Crystal data for the hydrated [Au(Gly-L-His-N,N',N'')Cl]NO(3)·1.25H(2)O complex and its serendipitously obtained unhydrated form were compared with previously reported X-ray data for the hydrated chloride complex [Au(Gly-L-His-N,N',N'')Cl]Cl·3H(2)O and with the analogous, though uncharged, Pd(II) and Pt(II) complexes. Furthermore, in the present study the crystal structure of the nitrate salt of Au(III) complex with L-Ala-L-His dipeptide, [Au(L-Ala-L-His-N,N',N'')Cl]NO(3)·2.5H(2)O has been determined.


Subject(s)
Alanine/chemistry , Dipeptides/chemistry , Gold/chemistry , Anions , Crystallography, X-Ray , Magnetic Resonance Spectroscopy , Organometallic Compounds/chemistry , Solvents/chemistry
18.
Acta Crystallogr C ; 66(Pt 2): m51-4, 2010 Feb.
Article in English | MEDLINE | ID: mdl-20124681

ABSTRACT

Crystallographic analysis of a solid solution of two diastereoisomers, i.e. ({(1S,R)-1-carboxy-3-[(R,S)-methylsulfinyl]propyl}aminocarbonyl)methanaminium tetrachloridoaurate(III) and ({(1S,R)-1-carboxy-3-[(S,R)-methylsulfinyl]propyl}aminocarbonyl)methanaminium tetrachloridoaurate(III), (C(7)H(15)N(2)O(4)S)[AuCl(4)], has shown that in the presence of gold(III), the methionine part of the Gly-D,L-Met dipeptide is oxidized to sulfoxide, and no coordination to the Au(III) cation through the S atom of the sulfoxide is observed. In view of our observation, literature reports that methionine acts as an N,S-bidentate donor ligand forming stable gold(III) complexes require verification. Moreover, it has been demonstrated that crystallization of the oxidation product leads to a substantial 77:23 excess of both S-methionine/R-sulfoxide and R-methionine/S-sulfoxide over S-methionine/S-sulfoxide and R-methionine/R-sulfoxide. The presence of two different diastereoisomers at the same crystallographic site is a source of static disorder at this site.


Subject(s)
Dipeptides/chemistry , Gold/chemistry , Safrole/analogs & derivatives , Crystallography, X-Ray , Isomerism , Models, Molecular , Oxidation-Reduction , Safrole/chemistry
19.
J Org Chem ; 74(12): 4573-83, 2009 Jun 19.
Article in English | MEDLINE | ID: mdl-19453115

ABSTRACT

Previously unknown diaryl esters of l-tartaric acid have been synthesized. Their conformations have been studied by DFT calculations, NMR and circular dichroism spectroscopy in solution, as well as by X-ray diffraction in the crystalline state. The four-carbon tartrate chain of diaryl esters was found to be extended in all cases, with a higher degree of nonplanarity in the crystals. Dinaphthyl tartrates show unusually strong exciton Cotton effects (A = -228 for di-1-naphthyl l-tartrate) due to the coupling of allowed 1B(b) transitions in naphthyl chromophores, despite the acyclic structure and significant distance (over 10 A) between the two chromophores.

20.
Acta Crystallogr Sect E Struct Rep Online ; 65(Pt 6): m648-9, 2009 May 14.
Article in English | MEDLINE | ID: mdl-21583014

ABSTRACT

The title compound, {[Cd(2)(C(2)H(3)O(3))(2)(SO(4))(H(2)O)(4)]·H(2)O}(n), was obtained unintentionally in a transmetallation reaction. The crystal structure contains a two-dimensional metal-organic framework based on Cd(II)-(µ-hydroxy-acetato-κ(4)O(1),O(2):O(1),O(1'))-Cd(II) zigzag chains joined together by bridging SO(4) anions. The resulting layers are shifted with respect to each other and are stacked along the c axis. Their construction is supported by hydrogen bonds between water molecules and between water molecules and carboxylate or sulfate groups. Neighbouring layers are bridged by hydrogen bonds between the hydroxyl substituent and a sulfate anion. The sulfate anion and solvent water mol-ecule are located on twofold axes. The results demonstrate that care must be taken when preparing ethyl-enediamine-tetra-acetic acid-type complexes by transmetallation, in order to avoid precipitation of metal complexes with the α-hydroxy-acetate ligand.

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