AlveoMPU: Bridging the Gap in Lung Model Interactions Using a Novel Alveolar Bilayer Film.

The alveoli, critical sites for gas exchange in the lungs, comprise alveolar epithelial cells and pulmonary capillary endothelial cells. Traditional experimental models rely on porous polyethylene terephthalate or polycarbonate membranes, which restrict direct cell-to-cell contact. To address this limitation, we developed AlveoMPU, a new foam-based mortar-like polyurethane-formed alveolar model that facilitates direct cell-cell interactions. AlveoMPU features a unique anisotropic mortar-shaped configuration with larger pores at the top and smaller pores at the bottom, allowing the alveolar epithelial cells to gradually extend toward the bottom. The underside of the film is remarkably thin, enabling seeded pulmonary microvascular endothelial cells to interact with alveolar epithelial cells. Using AlveoMPU, it is possible to construct a bilayer structure mimicking the alveoli, potentially serving as a model that accurately simulates the actual alveoli. This innovative model can be utilized as a drug-screening tool for measuring transepithelial electrical resistance, assessing substance permeability, observing cytokine secretion during inflammation, and evaluating drug efficacy and pharmacokinetics.

CO oxidation activity of non-reducible oxide-supported mass-selected few-atom Pt single-clusters.

Platinum nanocatalysts play critical roles in CO oxidation, an important catalytic conversion process. As the catalyst size decreases, the influence of the support material on catalysis increases which can alter the chemical states of Pt atoms in contact with the support. Herein, we demonstrate that under-coordinated Pt atoms at the edges of the first cluster layer are rendered cationic by direct contact with the Al2O3 support, which affects the overall CO oxidation activity. The ratio of neutral to cationic Pt atoms in the Pt nanocluster is strongly correlated with the CO oxidation activity, but no correlation exists with the total surface area of surface-exposed Pt atoms. The low oxygen affinity of cationic Pt atoms explains this counterintuitive result. Using this relationship and our modified bond-additivity method, which only requires the catalyst-support bond energy as input, we successfully predict the CO oxidation activities of various sized Pt clusters on TiO2.

Morphology of size-selected Ptn clusters on CeO2(111).

Supported Pt catalysts and ceria are well known for their application in automotive exhaust catalysts. Size-selected Pt clusters supported on a CeO2(111) surface exhibit distinct physical and chemical properties. We investigated the morphology of the size-selected Ptn (n = 5-13) clusters on a CeO2(111) surface using scanning tunneling microscopy at room temperature. Ptn clusters prefer a two-dimensional morphology for n = 5 and a three-dimensional (3D) morphology for n ≥ 6. We further observed the preference for a 3D tri-layer structure when n ≥ 10. For each cluster size, we quantitatively estimated the relative fraction of the clusters for each type of morphology. Size-dependent morphology of the Ptn clusters on the CeO2(111) surface was attributed to the Pt-Pt interaction in the cluster and the Pt-O interaction between the cluster and CeO2(111) surface. The results obtained herein provide a clear understanding of the size-dependent morphology of the Ptn clusters on a CeO2(111) surface.

Significant Transient Mobility of Platinum Clusters via a Hot Precursor State on the Alumina Surface.

Relaxation dynamics of hot metal clusters on oxide surfaces play a crucial role in a variety of physical and chemical processes. However, their transient mobility has not been investigated as much as other systems such as atoms and molecules on metal surfaces due to experimental difficulties. To study the role of the transient mobility of clusters on the oxide surface, we investigated the initial adsorption process of size-selected Pt clusters on a thin Al2O3 film. Soft-landing the size-selected clusters while suppressing the thermal migration resulted in the transient migration controlling the initial adsorption states as an isolated and aggregated cluster, as revealed using scanning tunneling microscopy. We demonstrate that transient migration significantly contributes to the initial cluster adsorption process; the cross section for aggregation is seven times larger than the expected value from geometrical considerations, indicating that metal clusters are highly mobile during a energy dissipation process on the oxide surface.

Morphology and chemical states of size-selected Pt(n) clusters on an aluminium oxide film on NiAl(110).

The adsorption states of size-selected Ptn clusters (7 ≤ n ≤ 20) soft-landed on an Al2O3/NiAl(110) substrate were investigated using scanning tunneling microscopy, infrared reflection absorption spectroscopy, and temperature programmed desorption. Ptn clusters lay flat on the surface with a planar structure (n ≤ 18), and three-dimensional two-layer clusters start to appear at n ≥ 19. By considering the Pt-Pt and Pt-oxide bonds in the cluster, the morphological transition could be reasonably explained. Using CO probe molecules, the chemical states of the Pt atoms inside the clusters were investigated. Two ontop CO species were observed inside the clusters, and were assigned as adsorbed CO on neutral and slightly cationic Pt atoms. Despite the first layer Pt atoms, the Ptn clusters are composed of two kinds of Pt atoms. The observed size dependence of the Pt atoms inside the clusters may contribute to the size-dependent chemical reactivity of Ptn clusters on the Al2O3 surface.

Epitaxial growth of CeO2(111) film on Ru(0001): scanning tunneling microscopy (STM) and x-ray photoemission spectroscopy (XPS) study.

We formed an epitaxial film of CeO2(111) by sublimating Ce atoms on Ru(0001) surface kept at elevated temperature in an oxygen ambient. X-ray photoemission spectroscopy measurement revealed a decrease of Ce(4+)/Ce(3+) ratio in a small temperature window of the growth temperature between 1070 and 1096 K, which corresponds to the reduction of the CeO2(111). Scanning tunneling microscope image showed that a film with a wide terrace and a sharp step edge was obtained when the film was grown at the temperatures close to the reduction temperature, and the terrace width observed on the sample grown at 1060 K was more than twice of that grown at 1040 K. On the surface grown above the reduction temperature, the surface with a wide terrace and a sharp step was confirmed, but small dots were also seen in the terrace part, which are considerably Ce atoms adsorbed at the oxygen vacancies on the reduced surface. This experiment demonstrated that it is required to use the substrate temperature close to the reduction temperature to obtain CeO2(111) with wide terrace width and sharp step edges.

Atomically precise cluster catalysis towards quantum controlled catalysts.

Catalysis of atomically precise clusters supported on a substrate is reviewed in relation to the type of reactions. The catalytic activity of supported clusters has generally been discussed in terms of electronic structure. Several lines of evidence have indicated that the electronic structure of clusters and the geometry of clusters on a support, including the accompanying cluster-support interaction, are strongly correlated with catalytic activity. The electronic states of small clusters would be easily affected by cluster-support interactions. Several studies have suggested that it is possible to tune the electronic structure through atomic control of the cluster size. It is promising to tune not only the number of cluster atoms, but also the hybridization between the electronic states of the adsorbed reactant molecules and clusters in order to realize a quantum-controlled catalyst.

RactIP: fast and accurate prediction of RNA-RNA interaction using integer programming.

MOTIVATION: Considerable attention has been focused on predicting RNA-RNA interaction since it is a key to identifying possible targets of non-coding small RNAs that regulate gene expression post-transcriptionally. A number of computational studies have so far been devoted to predicting joint secondary structures or binding sites under a specific class of interactions. In general, there is a trade-off between range of interaction type and efficiency of a prediction algorithm, and thus efficient computational methods for predicting comprehensive type of interaction are still awaited. RESULTS: We present RactIP, a fast and accurate prediction method for RNA-RNA interaction of general type using integer programming. RactIP can integrate approximate information on an ensemble of equilibrium joint structures into the objective function of integer programming using posterior internal and external base-paring probabilities. Experimental results on real interaction data show that prediction accuracy of RactIP is at least comparable to that of several state-of-the-art methods for RNA-RNA interaction prediction. Moreover, we demonstrate that RactIP can run incomparably faster than competitive methods for predicting joint secondary structures. AVAILABILITY: RactIP is implemented in C++, and the source code is available at http://www.ncrna.org/software/ractip/.

Atomic-resolution imaging of size-selected platinum clusters on TiO(2)(110) surfaces.

Size-selected Pt(n) (n=4,7-10,15) clusters were deposited on TiO(2)(110)-(1x1) surfaces and imaged at atomic resolution using an ultrahigh-vacuum scanning tunneling microscope with a carbon nanotube tip. Clusters smaller than Pt(7) lay flat on the surface with a planar structure and a planar-to-three-dimensional transition occurred at n=8 for Pt(n) clusters on TiO(2). However, both Pt(8) and Pt(9) had two types of geometric structures. The geometric structures depend strongly on the number of atoms in the deposited cluster possibly because of the differences in binding energies in different-sized clusters and different degrees of interaction with the surface. We obtained atomic-resolution images of size-selected clusters on surfaces for the first time, enabling the identification of atomic alignments in the clusters on the surface.

Reactions of nitrogen monoxide on cobalt cluster ions: reaction enhancement by introduction of hydrogen.

Absolute cross sections for NO chemisorption, NO decomposition, and cluster dissociation in the collision of a nitrogen monoxide molecule, NO, with cluster ions Con+ and ConH+ (n=2-5) were measured as a function of the cluster size, n, in a beam-gas geometry in a tandem mass spectrometer. Size dependency of the cross sections and the change of the cross sections by introduction of H to Con+ (effect of H-introduction) are explained by a statistical model based on the RRK theory, with the aid of the energetics obtained by a DFT calculation. It was found that the reactions are governed by the energetics rather than dynamics. For instance, Co3+ does not react appreciably with NO because the reactions are endothermic, while Co3H+ does because the reaction becomes exothermic by the H-introduction.