Methods to estimate changes in soil water for phenotyping root activity in the field.

BACKGROUND AND AIMS: There is an urgent need to develop new high throughput approaches to phenotype roots in the field. Excavating roots to make direct measurements is labour intensive. An alternative to excavation is to measure soil drying profiles and to infer root activity. METHODS: We grew 23 lines of wheat in 2013, 2014 and 2015. In each year we estimated soil water profiles with electrical resistance tomography (ERT), electromagnetic inductance (EMI), penetrometer measurements and measurements of soil water content. We determined the relationships between the measured variable and soil water content and matric potential. RESULTS: We found that ERT and penetrometer measurements were closely related to soil matric potential and produced the best discrimination between wheat lines. We found genotypic differences in depth of water uptake in soil water profiles and in the extent of surface drying. CONCLUSIONS: Penetrometer measurements can provide a reliable approach to comparing soil drying profiles by different wheat lines, and genotypic rankings are repeatable across years. EMI, which is more sensitive to soil water content than matric potential, and is less effective in drier soils than the penetrometer or ERT, nevertheless can be used to rapidly screen large populations for differences in root activity.

Wavelet analysis of the variability of nitrous oxide emissions from soil at decameter to kilometer scales.

We analyzed data on nitrous oxide emissions and on soil properties that were collected on a 7.5-km transect across an agricultural landscape in eastern England using the discrete wavelet packet transform. We identified a wavelet packet "best basis" for the emission data. Wavelet packet basis functions are used to decompose the data into a set of coefficients that represent the variation in the data at different spatial frequencies and locations. The "best basis" for a set of data is adapted to the variability in the data by ensuring that the spatial resolution of local features is good at those spatial frequencies where variation is particularly intermittent. The best basis was shown to be adapted to represent such intermittent variation, most markedly at wavelengths of 100 m or less. Variation at these wavelengths was shown to be correlated particularly with chemical properties of the soil, such as nitrate content. Variation at larger wavelengths showed less evidence of intermittency and was found to be correlated with soil chemical and physical constraints on emission rates. In addition to frequency-dependent intermittent variation, it was found that the variance of emission rates at some wavelengths changed at particular locations along the transect. One factor causing this appeared to be contrasts in parent material. The complex variation in emission rates identified by these analyses has implications for how emission rates are estimated.

Methane fluxes in aerobic soils.

Aerobic soils are an important sink for methane (CH4), contributing up to 15% of global CH4 destruction. However, the sink strength is significantly affected by land management, nitrogen (N) fertilizers and acidity. The rates of uptake from the atmosphere of both enhanced (10 ppmv) and ambient (2 ppmv) concentrations of CH4 were measured in laboratory incubations of soil cores under controlled conditions taken from sites in the U.K. and Germany. The most rapid rates of uptake were measured in soil from deciduous woodland at pH 4 (measured in water). Extended (150 years) cultivation of land for arable crops reduced uptake rate by 85% compared to that in the same soil under an adjacent woodland. The long-term application of ammonium (NH4)-based fertilizer, but not nitrate (NO3)-based fertilizer, completely inhibited CH4 uptake, but the application for the same period of farmyard manure (FYM) that contained more N than the fertilizer had no inhibitory effect. Where a combination of FYM and inorganic fertilizer was applied there was a reduction in methane uptake rate compared to plots receiving solely FYM.Autoclaving showed that the uptake of CH4 was microbially mediated. The most likely causes of the inhibitory effects seen are (i) insufficient concentrations of CH4 in situ to activate methane monooxygenase; (ii) the direct inhibition of CH4 oxidation by NH inf4 (sup+) ions; (iii) the suppression of methanotrophs by NH4-based fertilizers; (iv) the requirement of methanotrophs for a stable soil architecture which is incompatible with the disturbance caused by regular arable cultivation.