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1.
Article in Chinese | MEDLINE | ID: mdl-33910286

ABSTRACT

Objective: To understand the mastery of occupational hygienic knowledge and the implementing of occupational health protection measures in the group which were exposed to the procedure of manufacture and use in glass fiber company, and to explore the feasibility of the prevention of the skin injury by occupational health education in glass fiber workers. Methods: We selected 257 on-the-job employees as the research object in a ceramic enterprise in Nanjing from June 2018 to August 2019, with the method of cluster random sampling. According to Solomon's design, the intervention group in which we took measures with health education was divided into RG(1) (O(1)XO(2)) and RG(3) (XO(5)) group, and the control group where we didn't take any intervention was divided into RG(2) (O(3)-O(4)) and RG(4) (-O(6)) group. The intervention effect of health education on the occupational protection of glass fiber workers was evaluated by the results of questionnaire. Results: After training, the average score of occupational health knowledge in the intervention group was 27.34 points higher than that before training, the intervention index was 1.42, 23.62-27.73 points higher than the control glass fiber workers and 33.62-35.52 points higher than the control glass non-glass fiber workers; Compared with the control group, the positive attitude rate of fiber glass workers in the intervention group increased by 13.28%, 13.51%, 11.68% and 11.48%, and the intervention indexes were 1.18, 1.17, 1.14 and 1.15, which was corresponding to using protective cream, wearing gloves, wearing working clothes, washing hands and bathing after work, respectively; Compared with the control group, the implementation rate of occupational protection measures which were represented by wearing gloves、washing hands and bathing for glass fiber workers in the intervention group increased by 29.25% and 7.27% respectively, and the intervention indexes were 1.43 and 1.08 respectively; The skin injury rate of fiberglass workers in the intervention group was reduced by 11.43% comparing to the control group, the intervention index was 1.67. Conclusion: According to the occupational health education of fiberglass workers, it improves the mastery of occupational health knowledge, positive atti-tude rate and the implementation rate of occupational protection measures, meanwhile, it reduces the skin injury rate of the intervention objects to a certain extent.


Subject(s)
Occupational Exposure , Occupational Health , Glass , Health Education , Humans , Occupational Exposure/prevention & control , Surveys and Questionnaires
2.
Eur Rev Med Pharmacol Sci ; 23(17): 7526-7531, 2019 Sep.
Article in English | MEDLINE | ID: mdl-31539142

ABSTRACT

OBJECTIVE: Diabetic ketoacidosis is one of the most serious acute complications of the gestational diabetes and is marked by the triad of the uncontrolled hyperglycemia, acidosis, and ketosis. Diabetic ketoacidosis can be a life-threatening emergency for mother and fetus, whose genetic factors resulting in diabetic ketoacidosis remain unclear. This study aimed to explore the correlation between SLC26A6 gene polymorphism rs184187143 and the risk of diabetic ketoacidosis of gestational diabetic mellitus (GDM). PATIENTS AND METHODS: A total of 98 patients with GDM and 98 patients with diabetic ketoacidosis of GDM were enrolled. The direct sequencing of the products by Polymerase Chain Reactions of the extracted genomic DNA from the involved patients was performed to analyze the SLC26A6 gene polymorphism rs184187143, and the further genotype frequencies were compared to the statistical analysis of the clinical and biochemical data. RESULTS: A significantly increased prevalence of the G allele (p = 0.032, OR = 2.326, 95% CI = 1.539-3.516), C/G genotype (p = 0.021, OR = 3.582, 95% CI = 1.216-10.558), and a previously uncharacterized rs184187143, was discovered in the diabetic ketoacidosis of the GDM group. The genotype of SLC26A6 rs184187143 was shown to be markedly associated with increased prevalence of the diabetic ketoacidosis of GDM. CONCLUSIONS: Our study firstly established that the G allele and C/G genotype of rs184187143 single nucleotide polymorphism (SNP) in SLC26A6 gene was closely linked with the increased risk for the development of the diabetic ketoacidosis of GDM.


Subject(s)
Diabetes, Gestational/genetics , Diabetic Ketoacidosis/epidemiology , Polymorphism, Single Nucleotide , Sulfate Transporters/genetics , Aged , Case-Control Studies , Diabetic Ketoacidosis/genetics , Female , Genetic Association Studies , Humans , Middle Aged , Pregnancy , Prevalence , Sequence Analysis, DNA
3.
Genet Mol Res ; 15(3)2016 Aug 26.
Article in English | MEDLINE | ID: mdl-27706623

ABSTRACT

Sequence-characterized amplified region (SCAR) is a valuable molecular marker for the genetic identification of any species. This marker is mainly derived from molecular cloning of random amplified polymorphic DNA (RAPD). We have previously reported the use of an improved RAPD technique for the genetic characterization of different samples of Canarium album (Lour.) Raeusch (C. album). In this study, DNA fragments were amplified using improved RAPD amplified from different samples of C. album. The amplified DNA fragment was excised, purified from an agarose gel and cloned into a pGM-T vector; subsequently, a positive clone, called QG12-5 was identified by PCR amplification and enzymatic digestion and sequenced by Sanger di-deoxy sequencing method. This clone was revealed consisting of 510 nucleotides of C. album. The SCAR marker QG12-5 was developed using specifically designed PCR primers and optimized PCR conditions. This SCAR marker expressed seven continuous "TATG" [(TATG)n] tandem repeats, which was found to characterize C. album. Subsequently, this novel SCAR marker was deposited in GenBank with accession No. KT359568. Therefore, we successfully developed a C. album-specific SCAR marker for the identification and authentication of different C. album species in this study.


Subject(s)
Burseraceae/genetics , DNA, Plant/genetics , Genetic Markers , Genome, Plant , Random Amplified Polymorphic DNA Technique , Base Sequence , Cloning, Molecular , DNA Primers/chemical synthesis , Minisatellite Repeats , Plants, Medicinal , Polymerase Chain Reaction , Sequence Analysis, DNA
4.
Genet Mol Res ; 15(3)2016 Sep 16.
Article in English | MEDLINE | ID: mdl-27706740

ABSTRACT

Random amplified polymorphic DNA (RAPD) is a widely used molecular marker technique. As traditional RAPD has poor reproducibility and productivity, we previously developed an improved RAPD method (termed RAMP-PCR), which increased the reproducibility, number of bands, and efficiency of studies on polymorphism. To further develop the efficiency of this method, we used high-GC content primers for improved RAMP-PCR with DNA samples from Lonicera japonica. Comparison of amplification profiles obtained by standard RAPD primers with those obtained by regular PCR and RAMP-PCR, and high-GC primers with regular PCR and RAMP-PCR showed that the average number of bands and polymorphisms per primer gradually and significantly increased (from 6.4 to 15.0 and from 4.6 to 10.2, respectively). Cluster dendrograms showed similar results, indicating that this new method is consistent and reproducible. A total of 22 samples from different species, including plants, animals, and humans, were used for RAMP-PCR with high-GC primers. Multiple bands were successfully amplified from all samples, demonstrating that this method is a reliable technique with consistent results and may be of general interest in studies on different genera and species. We developed highly effective DNA markers, which can provide a more effective and potentially valuable approach than traditional RAPD for the genetic identification of various organisms, particularly of medicinal plants.


Subject(s)
Genetic Markers , Lonicera/genetics , Random Amplified Polymorphic DNA Technique/methods , DNA Primers , DNA, Plant/genetics , Polymerase Chain Reaction , Polymorphism, Genetic
5.
Genet Mol Res ; 15(3)2016 Aug 19.
Article in English | MEDLINE | ID: mdl-27706590

ABSTRACT

Development of sequence-characterized amplified region (SCAR) markers from random-amplified polymorphic DNA (RAPD) fragments is a valuable molecular approach for the genetic identification of different species. By using SCAR markers, molecular analysis is reduced to a simple polymerase chain reaction (PCR) analysis using primers designed from the amplicon sequence of RAPD. In this study, the DNA fragments from an improved RAPD amplification of Ganoderma species were cloned into a pGM-T vector; positive clones were identified by PCR amplification and enzymatic digestion, and finally, DNA fragments were sequenced using the Sanger sequencing method for developing the SCAR markers. Two SCAR markers, named LZ4-1 with 534 nucleotides, and LZ5-2 with 337 nucleotides were identified, which are specific to Ganoderma lucidium (Leysser: Fr) Karst species. BLAST of these two nucleotide sequences in the GenBank database showed no identity to other species. We deposited these sequences into the GenBank database (LZ4-1 accession No. KM391933, LZ5-2 accession No. KM391934). PCR assays confirmed them as novel molecular markers for G. lucidium (Leysser: Fr) Karst, which might be used for genetic authentication of adulterant samples. Thus, our study developed two specific SCAR markers for identifying and distinguishing the medicinal mushroom G. lucidium (Leysser: Fr) Karst from other Ganoderma species.


Subject(s)
Reishi/genetics , Cloning, Molecular , DNA, Fungal/genetics , DNA, Fungal/isolation & purification , Genes, Fungal , Genetic Markers , Polymorphism, Genetic , Random Amplified Polymorphic DNA Technique , Sequence Analysis, DNA
6.
Beijing Da Xue Xue Bao Yi Xue Ban ; 48(3): 442-7, 2016 Jun 18.
Article in Chinese | MEDLINE | ID: mdl-27318905

ABSTRACT

OBJECTIVE: To see the influence of different antiplatelet therapies on stroke patients' readmission by performing a deep data-mining into Beijing Healthcare Insuring Database, based on a large sample size. METHODS: Aretrospective cohort study, was adopted to extract patients primarily diagnosed as ischemic stroke from healthcare database. The first hospital records were considered as the patient's baseline in this study, who were divided into MAPT (aspirin) and DAPT (aspirin and clopidogrel) according to the patient's baseline medications. A follow-up was conducted to see whether the patients would have rehospitalization record because of major result events after medication. The major result events, included: (1) recurrence of ischemic stroke; (2) hemorrhagic transformation of ischemic stroke; (3) myocardial infarction; (4) the digestive hemorrhage. The Kaplan-Meier figure was used to compare the survival situations between these two groups, the log-rank test was used to test the difference of the survival curve, and 1:1 propensity score matching was calculated from the patients' baseline data. Cox proportional hazards model was used to calculate the hazard ratio (HR). RESULTS: A total of 27 695 patients From January 2010 to September 2013 were included, 4 047 with DAPT, and 23 648 with MAPT. Because the baseline characteristics of the patients was disequilibrium, so we used 1:1 propensity score matching, after which, the number of the two groups was 4 046 each. Adjusted for the general demographic characteristics such as age, sex, nationality, complication and drug combination, no statistical significance was observed between the survival curves of the two groups (P=0.06). HR value of major result events between the groups was 0.91 (0.82-1.01, P=0.07), which was not statistically significant. The covariate gender HR=1.36 (1.20-1.55, P<0.05), accompanied by diabetes HR= 1.36 (1.20-1.54, P<0.05), dyslipidemia HR=1.13 (1.00-1.27, P=1.13), heart disease HR=1.39 (1.22-1.58, P<0.05) was statistically significant. Drug combination with other antiplatelet agents HR=1.05 (0.95-1.17, P>1.05) did not increase the risk of readmission. CONCLUSION: There was no difference in prevention of readmission between patients with DAPT and MAPT. Patients with complications should actively treat the complications at the same time as they prevent recurrence after first attack.


Subject(s)
Aspirin/therapeutic use , Patient Readmission/statistics & numerical data , Platelet Aggregation Inhibitors/therapeutic use , Stroke/drug therapy , Ticlopidine/analogs & derivatives , Beijing , Clopidogrel , Drug Therapy, Combination , Hemorrhage , Humans , Myocardial Infarction , Proportional Hazards Models , Recurrence , Retrospective Studies , Secondary Prevention , Ticlopidine/therapeutic use
7.
Genet Mol Res ; 15(2)2016 Apr 28.
Article in English | MEDLINE | ID: mdl-27173286

ABSTRACT

Sequence-characterized amplified region (SCAR) markers were further developed from high-GC primer RAMP-PCR-amplified fragments from Lonicera japonica DNA by molecular cloning. The four DNA fragments from three high-GC primers (FY-27, FY-28, and FY-29) were successfully cloned into a pGM-T vector. The positive clones were sequenced; their names, sizes, and GenBank numbers were JYHGC1-1, 345 bp, KJ620024; YJHGC2-1, 388 bp, KJ620025; JYHGC7-2, 1036 bp, KJ620026; and JYHGC6-2, 715 bp, KJ620027, respectively. Four novel SCAR markers were developed by designing specific primers, optimizing conditions, and PCR validation. The developed SCAR markers were used for the genetic authentication of L. japonica from its substitutes. This technique provides another means of developing DNA markers for the characterization and authentication of various organisms including medicinal plants and their substitutes.


Subject(s)
Cloning, Molecular/methods , GC Rich Sequence , Lonicera/genetics , Random Amplified Polymorphic DNA Technique/methods , DNA Primers/chemistry , DNA Primers/genetics , Genetic Markers
8.
Oncogene ; 35(18): 2311-21, 2016 05 05.
Article in English | MEDLINE | ID: mdl-26234679

ABSTRACT

The MDS1 and ecotropic viral integration site 1 (EVI1) complex locus (MECOM) gene encodes several transcription factor variants including MDS1-EVI1, EVI1 and EVI1Δ324. Although MDS1-EVI1 has been associated with tumor-suppressing activity, EVI1 is a known oncogene in various cancers, whose expression is associated with poor patient survival. Although EVI1Δ324 is co-transcribed with EVI1, its activity in cancer cells is not fully understood. Previous reports described that unlike EVI1, EVI1Δ324 protein cannot transform fibroblasts because of its disrupted N-terminal zinc finger (ZNF) domain. To better understand EVI1Δ324 biology and function, we obtained genome-wide binding occupancies and expression data in ovarian cancer cells. We characterized its DNA-binding sites, binding motif and target genes. Comparative analyses with previous study show that EVI1 and EVI1Δ324 share similar transcriptional activities linked to their common C-terminus ZNF domain. They bind to an E-twenty-six family (ETS)-like motif, target to a large extent the same genes and cooperate with AP1 transcription factor. EVI1Δ324-occupied genes were 70.7% similar to EVI1-bound genes. More strikingly, EVI1 and EVI1Δ324 differentially expressed genes were 99.87% identical, indicating comparable transcriptional regulatory functions. Consistently with gene ontologies linked to these target genes, EVI1Δ324 expression in HeLa cells could enhance anchorage-independent growth, such as EVI1, showing that EVI1Δ324 expression also lead to pro-oncogenic effects. The main specific feature of EVI1 variant is its N-terminus ZNF domain that binds DNA through GATA-like motif. We found that most GATA-like EVI1 chromatin immunoprecipitation sequencing peaks are far from genes and are not involved in transcriptional regulation. These genomic regions were enriched in simple sequence repeats and displayed high meiotic recombination rates. Overall, our genomics analyses uncovered common and specific features of two major MECOM isoforms. Their influence on transcription and downstream cell proliferation was comparable. However, EVI1-specific GATA-like binding sites, from its N-terminus ZNF domain, associated with high recombination rates, suggesting possible additional oncogenic potential for EVI1 in modulating genomic stability.


Subject(s)
Carcinogenesis/genetics , DNA-Binding Proteins/genetics , DNA-Binding Proteins/metabolism , Genomics , Proto-Oncogenes/genetics , Transcription Factors/genetics , Transcription Factors/metabolism , Transcription, Genetic , Base Sequence , Cell Line, Tumor , DNA-Binding Proteins/chemistry , Female , Genomic Instability , Humans , MDS1 and EVI1 Complex Locus Protein , Meiosis/genetics , Nucleotide Motifs , Ovarian Neoplasms/pathology , Protein Domains , Protein Isoforms/chemistry , Protein Isoforms/genetics , Protein Isoforms/metabolism , Recombination, Genetic , Transcription Factors/chemistry
9.
Genet Mol Res ; 14(4): 14488-95, 2015 Nov 19.
Article in English | MEDLINE | ID: mdl-26600507

ABSTRACT

Y chromosomal microdeletions at the azoospermia factor locus and chromosome abnormalities have been implicated as the major causes of idiopathic male infertility. A marker chromosome is a structurally abnormal chromosome in which no part can be identified by cytogenetics. In this study, to identify the origin of the marker chromosomes and to perform a genetic diagnosis of patients with azoospermia, two-color fluorescence in situ hybridization (FISH) and polymerase chain reaction (PCR) techniques were carried out. The marker chromosomes for the two patients with azoospermia originated in the Y chromosome; it was ascertained that the karyotype of both patients was 46,X, ish del(Y)(q11)(DYZ3+, DXZ1-). The combination of two-color FISH and PCR techniques is an important method for the identification of the origin of marker chromosomes. Thus, genetic counseling and a clear genetic diagnosis of patients with azoospermia before intracytoplasmic sperm injection or other clinical managements are important.


Subject(s)
Azoospermia/diagnosis , Chromosome Aberrations , In Situ Hybridization, Fluorescence , Sex Chromosome Disorders of Sex Development/diagnosis , Azoospermia/genetics , Azoospermia/pathology , Chromosome Deletion , Chromosomes, Human, Y/genetics , Humans , Infertility, Male , Karyotype , Male , Polymerase Chain Reaction , Sex Chromosome Aberrations , Sex Chromosome Disorders of Sex Development/genetics , Sex Chromosome Disorders of Sex Development/pathology
10.
Genet Mol Res ; 14(4): 18078-89, 2015 Dec 22.
Article in English | MEDLINE | ID: mdl-26782455

ABSTRACT

Non-invasive prenatal diagnosis is used to detect the genetic material of the fetus by isolating the cell-free fetal DNA (cffDNA) from maternal peripheral blood. In order to establish an isolation method for cffDNA from maternal peripheral blood in Chinese women, the cffDNA was acquired with a two-step centrifugation using a QlAamp DNA Blood mini kit. The SRY gene of plasma DNA was amplified by polymerase chain reaction (PCR). Real-time quantitative PCR was used to measure the concentration of cffDNA in maternal peripheral blood in different pregnant women. The results of the SRY gene amplification of plasma DNA from pregnant women was the same as that of the amniocyte DNA. The average concentration of cffDNA in maternal peripheral blood of pregnant women in different gestational stages was 0.98 ng/mL (0.26-1.49 ng/mL), 1.43 ng/mL (0.46- 2.34 ng/mL), and 1.95 ng/mL (0.65-6.81 ng/mL) from early, middle, and late gestational stages, respectively. The mean of cffDNA from total DNA in plasma in different stages of gestation was 22.28% (9.86-27.81%). The lowest concentration of DNA amplified by nested-PCR in our research was 10-4-10-3 ng/µL. The isolation method for cffDNA from maternal peripheral blood was successfully established and further research into its applications will be conducted.


Subject(s)
DNA/blood , Fetus , Prenatal Diagnosis/methods , SOXB1 Transcription Factors/blood , Adult , Chromosomes, Human, Y/genetics , DNA/isolation & purification , Female , Gestational Age , Humans , Pregnancy , SOXB1 Transcription Factors/genetics
11.
Oncogene ; 31(13): 1695-709, 2012 Mar 29.
Article in English | MEDLINE | ID: mdl-21860422

ABSTRACT

The transition from quiescence to proliferation is a key regulatory step that can be induced by serum stimulation in cultured fibroblasts. The transcription factor Myc is directly induced by serum mitogens and drives a secondary gene expression program that remains largely unknown. Using mRNA profiling, we identify close to 300 Myc-dependent serum response (MDSR) genes, which are induced by serum in a Myc-dependent manner in mouse fibroblasts. Mapping of genomic Myc-binding sites by ChIP-seq technology revealed that most MDSR genes were directly targeted by Myc, but represented a minor fraction (5.5%) of all Myc-bound promoters (which were 22.4% of all promoters). Other target loci were either induced by serum in a Myc-independent manner, were not significantly regulated or were negatively regulated. MDSR gene products were involved in a variety of processes, including nucleotide biosynthesis, ribosome biogenesis, DNA replication and RNA control. Of the 29 MDSR genes targeted by RNA interference, three showed a requirement for cell-cycle entry upon serum stimulation and 11 for long-term proliferation and/or survival. Hence, proper coordination of key regulatory and biosynthetic pathways following mitogenic stimulation relies upon the concerted regulation of multiple Myc-dependent genes.


Subject(s)
Chromosome Mapping , Fibroblasts/metabolism , Gene Expression Regulation , Proto-Oncogene Proteins c-myc/metabolism , Serum/physiology , Animals , Cell Line , Mice
12.
Chin J Physiol ; 42(2): 73-81, 1999 Jun 30.
Article in English | MEDLINE | ID: mdl-10513602

ABSTRACT

In the present study, we investigated the effects of corticotropin-releasing factor (CRF) injected into the dentate gyrus (DG) of the hippocampus on brain-derived neurotrophic factor (BDNF) mRNA expression and studied whether N-methyl-D-aspartate (NMDA) receptor mediates the effects of CRF on BDNF mRNA expression in the DG. Since both CRF and BDNF gene expressions are involved in memory processing in rats, we further investigated whether CRF facilitates memory retention through enhanced BDNF mRNA expression in the hippocampus. Effect of direct BDNF injection to the DG on retention performance in rats was also assessed. Results indicated that intra-DG CRF injection produced a dose-dependent (0.1 microg, 1.0 microg and 10 microg) increase in BDNF mRNA level, while intra-DG MK801 injection produced a dose-dependent (0.08 microg, 0.2 microg and 2.0 microg) decrease in BDNF mRNA expression in the DG. MK801, at a dose having no significant effect alone (0.08 microg), significantly antagonized the effect of CRF on BDNF mRNA expression. On the other hand, CRF (1.0 microg) consistently and markedly improved retention performance in rats in an inhibitory avoidance learning task. BDNF antisense oligonucleotide treatment, at a concentration which did not affect retention performance alone (0.5 mM), blocked the memory-enhancing effect of CRF. However, direct and chronic BDNF injection to the DG did not improve memory performance in rats. These results together suggest that at least one of the mechanisms responsible for the memory-facilitating effect of CRF is mediated through enhanced BDNF mRNA expression in the hippocampus. The lack of an effect of intra-DG BDNF injection on memory retention is also discussed.


Subject(s)
Brain-Derived Neurotrophic Factor/genetics , Corticotropin-Releasing Hormone/pharmacology , Gene Expression/drug effects , Retention, Psychology/drug effects , Retention, Psychology/physiology , Animals , Brain-Derived Neurotrophic Factor/pharmacology , Corticotropin-Releasing Hormone/antagonists & inhibitors , Dentate Gyrus/metabolism , Dentate Gyrus/physiology , Dizocilpine Maleate/pharmacology , Dose-Response Relationship, Drug , Injections , Male , RNA, Messenger/metabolism , Rats , Rats, Sprague-Dawley
13.
Proc Natl Acad Sci U S A ; 96(22): 12406-11, 1999 Oct 26.
Article in English | MEDLINE | ID: mdl-10535935

ABSTRACT

During recent studies of ribonucleolytic "degradosome" complexes of Escherichia coli, we found that degradosomes contain certain RNAs as well as RNase E and other protein components. One of these RNAs is ssrA (for small stable RNA) RNA (also known as tm RNA or 10Sa RNA), which functions as both a tRNA and mRNA to tag the C-terminal ends of truncated proteins with a short peptide and target them for degradation. Here, we show that mature 363-nt ssrA RNA is generated by RNase E cleavage at the CCA-3' terminus of a 457-nt ssrA RNA precursor and that interference with this cleavage in vivo leads to accumulation of the precursor and blockage of SsrA-mediated proteolysis. These results demonstrate that RNase E is required to produce mature ssrA RNA and for normal ssrA RNA peptide-tagging activity. Our findings indicate that RNase E, an enzyme already known to have a central role in RNA processing and decay in E. coli, also has the previously unsuspected ability to affect protein degradation through its role in maturation of the 3' end of ssrA RNA.


Subject(s)
Endoribonucleases/metabolism , Peptides/metabolism , RNA Processing, Post-Transcriptional , RNA, Bacterial/genetics , RNA/metabolism , Base Sequence , Blotting, Northern , DNA Primers , Hydrolysis , Nucleic Acid Conformation , RNA/chemistry
14.
Proc Natl Acad Sci U S A ; 96(9): 4936-41, 1999 Apr 27.
Article in English | MEDLINE | ID: mdl-10220397

ABSTRACT

Three genes-reaper, grim, and hid-are crucial to the regulation of programmed cell death in Drosophila melanogaster. Mutations involving all three genes virtually abolish apoptosis during development, and homozygous hid mutants die as embryos with extensive defects in apoptosis. Although Hid is central to apoptosis in Drosophila, it has no mammalian homologue identified to date. We present evidence that expression of Drosophila Hid in mammalian cells induces apoptosis. This activity is subject to regulation by inhibitors of mammalian cell death. We show that the N terminus of Hid, which is a region of homology with Reaper and Grim, is essential for Hid's function in mammalian cells. We demonstrate that Hid is localized to the mitochondria via a hydrophobic region at its C terminus and functionally interacts with BclXL. This study shows that the function of Hid as a death inducer in Drosophila is conserved in mammalian cells and argues for the existence of a mammalian homologue of this critical regulator of apoptosis.


Subject(s)
Apoptosis/genetics , Conserved Sequence , Drosophila Proteins , Drosophila melanogaster/genetics , Neuropeptides/genetics , Peptides/genetics , Animals , Gene Expression Regulation , Genes, Insect , Humans , Transfection
15.
Proc Natl Acad Sci U S A ; 95(6): 3157-61, 1998 Mar 17.
Article in English | MEDLINE | ID: mdl-9501232

ABSTRACT

Recently, we found that a multicomponent ribonucleolytic degradosome complex formed around RNase E, a key mRNA-degrading and 9S RNA-processing enzyme, contains RNA in addition to its protein components. Herein we show that the RNA found in the degradosome consists primarily of rRNA fragments that have a range of distinctive sizes. We further show that rRNA degradation is carried out in the degradosome by RNase E cleavage of A+U-rich single-stranded regions of mature 16S and 23S rRNAs. The 5S rRNA, which is known to be generated by RNase E processing of the 9S precursor, was also identified in the degradosome, but tRNAs, which are not cleaved by RNase E in vitro, were absent. Our results, which provide evidence that decay of mature rRNAs occurs in growing Escherichia coli cells in the RNA degradosome, implicate RNase E in degradosome-mediated decay.


Subject(s)
Endoribonucleases/metabolism , Multienzyme Complexes/metabolism , Polyribonucleotide Nucleotidyltransferase/metabolism , RNA Helicases , RNA Processing, Post-Transcriptional , RNA, Bacterial/metabolism , RNA, Ribosomal/metabolism , Chromatography, Affinity , Endoribonucleases/immunology , Endoribonucleases/isolation & purification , Escherichia coli/enzymology , Multienzyme Complexes/immunology , Multienzyme Complexes/isolation & purification , Oligopeptides , Peptides , Polyribonucleotide Nucleotidyltransferase/immunology , Polyribonucleotide Nucleotidyltransferase/isolation & purification , RNA Precursors/metabolism , RNA, Ribosomal, 16S/metabolism , RNA, Ribosomal, 23S/metabolism , RNA, Ribosomal, 5S/metabolism , RNA, Transfer/metabolism , Substrate Specificity
16.
Neuroscience ; 82(4): 957-67, 1998 Feb.
Article in English | MEDLINE | ID: mdl-9466420

ABSTRACT

We have examined the relationship between brain-derived neurotrophic factor gene expression in the hippocampus and memory retention as well as long-term potentiation of rats. One-way inhibitory avoidance learning was adopted as the behavioural paradigm. Results revealed that brain-derived neurotrophic factor messenger RNA levels in the dentate gyrus of the hippocampus were markedly increased at 1 h, 3 h and 6 h post-training in rats showing good retention performance when compared with the poor retention controls. Direct injection of brain-derived neurotrophic factor antisense oligonucleotide into the dentate gyrus of the hippocampus before memory consolidation takes place markedly impaired retention performance in rats. It also significantly decreased brain-derived neurotrophic factor messenger RNA level in the dentate gyrus. The same antisense treatment also markedly reduced the amplitude and slope of excitatory postsynaptic potential as well as the brain-derived neurotrophic factor messenger RNA level in the dentate gyrus. These results suggest that hippocampal brain-derived neurotrophic factor gene expression plays an important role in the memory consolidation process and in the expression of long-term potentiation in rats. These results provide the first evidence to relate brain-derived neurotrophic factor gene expression and memory function in vertebrates. It further suggests that brain-derived neurotrophic factor gene expression is involved in behavioural plasticity.


Subject(s)
Brain-Derived Neurotrophic Factor/genetics , Long-Term Potentiation/drug effects , Memory/drug effects , Oligonucleotides, Antisense/pharmacology , Animals , Avoidance Learning/drug effects , Brain Chemistry/drug effects , Brain Chemistry/physiology , Brain-Derived Neurotrophic Factor/biosynthesis , Electric Stimulation , Electrophysiology , Hypoxanthine Phosphoribosyltransferase/biosynthesis , Male , Motor Activity/drug effects , Polymerase Chain Reaction , RNA, Messenger/biosynthesis , Rats , Rats, Sprague-Dawley
17.
Biochem Biophys Res Commun ; 226(3): 607-12, 1996 Sep 24.
Article in English | MEDLINE | ID: mdl-8831665

ABSTRACT

Xanthomonas campestris pv. campestris produces a large quantity of exopolysaccharide, xanthan gum, rendering the colonies mucoid. G76E was a non-mucoid mutant isolated from Xc17 by Tn5 mutagenesis. A 3.0-kb KpnI-EcoRI fragment from the Xc17 chromosome was able to restore mucoid phenotype to G76E. Sequence analysis of the region responsible for the restoration revealed an open reading frame, ORF324, able to encode a polypeptide of 35,232 Da which shows striking similarity to the UDP-glucose pyrophosphorylases from bacteria. The activity of UDP-glucose pyrophosphorylase reduced drastically in G76E was found to be regained in the presence of the cloned 3.0-kb KpnI-EcoRI fragment. In vitro expression of the gene in the S30 transcription/translation system produced a protein of ca. 35 kDa.


Subject(s)
Genes, Bacterial , Polysaccharides, Bacterial/biosynthesis , UTP-Glucose-1-Phosphate Uridylyltransferase/genetics , Xanthomonas campestris/enzymology , Amino Acid Sequence , Base Sequence , Cloning, Molecular , Conserved Sequence , Kinetics , Molecular Sequence Data , Molecular Weight , Mutagenesis, Insertional , Open Reading Frames , Recombinant Proteins/metabolism , Restriction Mapping , Sequence Homology, Amino Acid , Sinorhizobium meliloti/enzymology , UTP-Glucose-1-Phosphate Uridylyltransferase/chemistry , UTP-Glucose-1-Phosphate Uridylyltransferase/metabolism , Xanthomonas campestris/genetics
18.
Proc Natl Acad Sci U S A ; 93(9): 3865-9, 1996 Apr 30.
Article in English | MEDLINE | ID: mdl-8632981

ABSTRACT

The Escherichia coli endoribonuclease RNase E is essential for RNA processing and degradation. Earlier work provided evidence that RNase E exists intracellularly as part of a multicomponent complex and that one of the components of this complex is a 3'-to-5' exoribonuclease, polynucleotide phosphorylase (EC 2.7.7.8). To isolate and identify other components of the RNase E complex, FLAG-epitope-tagged RNase E (FLAG-Rne) fusion protein was purified on a monoclonal antibody-conjugated agarose column. The FLAG-Rne fusion protein, eluted by competition with the synthetic FLAG peptide, was found to be associated with other proteins. N-terminal sequencing of these proteins revealed the presence in the RNase E complex not only of polynucleotide phosphorylase but also of DnaK, RNA helicase, and enolase (EC 4.2.1.11). Another protein associated only with epitope-tagged temperature-sensitive (Rne-3071) mutant RNase E but not with the wild-type enzyme is GroEL. The FLAG-Rne complex has RNase E activity in vivo and in vitro. The relative amount of proteins associated with wild-type and Rne-3071 expressed at an elevated temperature differed.


Subject(s)
Endoribonucleases/chemistry , Escherichia coli Proteins , Escherichia coli/enzymology , Polyribonucleotide Nucleotidyltransferase/isolation & purification , Amino Acid Sequence , Animals , Base Sequence , Chaperonin 60/chemistry , DNA Primers , Endoribonucleases/biosynthesis , Endoribonucleases/isolation & purification , Epitopes , HSP70 Heat-Shock Proteins/chemistry , Molecular Sequence Data , Myocardium/enzymology , Oligopeptides , Peptides/chemistry , Peptides/isolation & purification , Phosphopyruvate Hydratase/chemistry , Plasmids , Point Mutation , Polymerase Chain Reaction , Polyribonucleotide Nucleotidyltransferase/biosynthesis , RNA Helicases , RNA Nucleotidyltransferases/chemistry , Recombinant Fusion Proteins/biosynthesis , Recombinant Fusion Proteins/chemistry , Recombinant Fusion Proteins/isolation & purification , Restriction Mapping , Sequence Homology, Amino Acid
19.
J Biol Chem ; 270(39): 22788-94, 1995 Sep 29.
Article in English | MEDLINE | ID: mdl-7559407

ABSTRACT

Translation initiation factor eIF1A is required in vitro for maximal rates of protein synthesis in mammalian systems. It functions primarily by dissociating ribosomes and stabilizing 40 S preinitiation complexes. To better elucidate its precise role in promoting the translation initiation process, the yeast form of eIF1A has been identified in Saccharomyces cerevisiae and purified to homogeneity on the basis of its cross-reaction with antibodies prepared against mammalian eIF1A. The apparent mass of yeast eIF1A (22 kDa) resembles that of the mammalian homolog (20 kDa), and the yeast factor is active in stimulating methionyl-puromycin synthesis in an assay composed of mammalian components. The gene encoding yeast eIF1A, named TIF11, was cloned and shown to be single copy. TIF11 encodes a protein comprising 153 amino acids (17.4 kDa); the deduced amino acid sequence exhibits 65% identity with the sequence of human eIF1A. Both human and yeast eIF1A contain clusters of positive residues at the N terminus and negative residues at the C terminus. Deletion/disruption of TIF11 demonstrates that eIF1A is essential for cell growth. Expression of human eIF1A cDNA rescues the growth defect of TIF11-disrupted cells, indicating that the structure/function of yeast and mammalian eIF1A is highly conserved.


Subject(s)
Eukaryotic Initiation Factor-1 , Genes, Fungal , Peptide Initiation Factors/biosynthesis , Peptide Initiation Factors/genetics , Saccharomyces cerevisiae/genetics , Saccharomyces cerevisiae/metabolism , Amino Acid Sequence , Animals , Base Sequence , Cloning, Molecular , Conserved Sequence , Genotype , Humans , Immunoblotting , Kinetics , Mammals , Molecular Sequence Data , Mutagenesis , Peptide Initiation Factors/metabolism , Puromycin/analogs & derivatives , Puromycin/biosynthesis , RNA, Transfer, Met/metabolism , Recombinant Proteins/biosynthesis , Recombinant Proteins/metabolism , Saccharomyces cerevisiae/physiology , Sequence Deletion , Sequence Homology, Amino Acid , Spores, Fungal
20.
J Biol Chem ; 270(11): 5764-71, 1995 Mar 17.
Article in English | MEDLINE | ID: mdl-7890705

ABSTRACT

Eukaryotic initiation factor (eIF) 1A (formerly called eIF-4C) is a small protein that promotes dissociation of 80 S ribosomes into subunits, stabilizes methionyl-tRNA binding to 40 S ribosomal subunits, and is required for the binding of mRNA to ribosomes. The sequence of eIF-1A derived from its cloned cDNA possesses a high frequency of basic residues and acidic residues at its N and C termini, respectively. Northwestern blotting with a fragment of mRNA indicates that eIF-1A binds RNA. Overexpression of the human eIF-1A cDNA in Escherichia coli and subsequent purification enabled us to prepare large quantities of active factor. The level of eIF-1A in HeLa cells determined by Western immunoblotting is 0.01% of total protein, which corresponds to 0.2 molecules of eIF-1A/ribosome. The moderate abundance means that eIF-1A is equal to or in excess of native 40 S subunits and suggests that the factor may not be limiting for protein synthesis, a conclusion reinforced by the failure of overproduced eIF-1A to stimulate translation rates in transiently transfected COS-1 cells. S1 nuclease protection and primer extension analyses show that eIF-1A mRNA possesses an unusually long 5'-untranslated leader that is very G/C-rich (72%). Unexpectedly, the mRNA is efficiently translated in HeLa cells as judged by polysome profile analyses.


Subject(s)
Eukaryotic Initiation Factor-1 , Peptide Initiation Factors/metabolism , RNA, Messenger/metabolism , RNA-Binding Proteins/metabolism , Animals , Antibodies/isolation & purification , Base Sequence , Blotting, Northern , Cell Line , Chlorocebus aethiops , Chromatography, Affinity , Cloning, Molecular , DNA Primers , DNA, Complementary , Escherichia coli , Humans , Immunoblotting , Kidney , Kinetics , Models, Structural , Molecular Sequence Data , Nucleic Acid Conformation , Peptide Initiation Factors/biosynthesis , Peptide Initiation Factors/isolation & purification , RNA, Messenger/biosynthesis , RNA, Messenger/chemistry , Rabbits/immunology , Recombinant Proteins/biosynthesis , Recombinant Proteins/isolation & purification , Recombinant Proteins/metabolism , Repetitive Sequences, Nucleic Acid , Restriction Mapping , Transfection
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