Dissolved organic matter (DOM) is independently stratified in thermally stratified water bodies.

Thermal stratification often occurs in deep-water bodies, including oceans, lakes, and reservoirs. Dissolved organic matter (DOM) plays a critical role in regulating the dynamics of aquatic food webs and water quality in aquatic ecosystems. In the past, thermal stratification boundaries have been sometimes used exclusively to analyze the vertical distribution of DOM in thermally stratified water bodies. However, the validity of this practice has been challenged. Currently, there is limited understanding of the formation mechanism and stratification of the vertical distribution of DOM in thermally stratified water bodies, which hinders the analysis of the interactions between DOM and vertical aquatic ecological factors. To address this gap, we conducted a comprehensive study to extensively collect the vertical distribution of DOM in thermally stratified water bodies and identify the primary factors influencing this distribution. We found that DOM was independently stratified in thermally stratified water bodies (including two cases in unstratified water bodies), and that the formation mechanisms and statuses of DOM stratification were different from those of thermal stratification. The boundaries and numbers of DOM stratification were generally inconsistent with those of thermal stratification. Therefore, it is more accurate to divide DOM into different layers according to its own vertical profile, and analyze DOM characteristics of each layer based on its own stratification instead of thermal stratification. This study sheds light on the relationship between DOM and thermal stratification and provides a novel approach for analyzing DOM vertical distribution characteristics and their impact on aquatic ecosystems. This finding also holds significant implications for the design and implementation of environmental management programs aimed at preserving the health and functionality of aquatic ecosystems.

Efficient heterotrophic nitrification by a novel bacterium Sneathiella aquimaris 216LB-ZA1-12T isolated from aquaculture seawater.

High concentration of ammonia poses a common threat to the healthy breeding of marine aquaculture organisms. Since aquaculture water is rich in organic matter, heterotrophic nitrifying bacteria might play a crucial role in ammonia removal. However, their roles in ammonia oxidation remain unknown. Here, we report a novel strain isolated from shrimp aquaculture seawater, identified as Sneathiella aquimaris 216LB-ZA1-12T, capable of heterotrophic nitrification. It is the first characterized heterotrophic nitrifier of the order Sneathiellales in the class Alphaproteobacteria. It exhibits high activity in heterotrophic nitrification, removing nearly 94% of ammonium-N under carbon-constrained conditions in 8 days with no observed nitrite accumulation. The heterotrophic nitrification pathway, inferred based on detection and genomic data was as follows: NH4+→NH2OH→NO→NO2-→NO3-. While this pathway aligns with the classical nitrification pathway, while the significant difference lies in the absence of classical HAO and HOX encoding genes in the genome, which is common in heterotrophic nitrifying bacteria. In summary, this bacterium is not only valuable for studying the nitrifying mechanism, but also holds potential for practical applications in ammonia removal in marine aquaculture systems and saline wastewater.

Sneathiella marina sp. nov., isolated from a sea anemone in the Western Pacific Ocean.

A novel marine bacterium designated strain PHK-P5T was isolated from a sea anemone (Actinostolidae sp. 1). Phylogenetic analysis based on 16S rRNA gene sequences indicated that strain PHK-P5T belonged to the genus Sneathiella. The bacterium was Gram-stain-negative, aerobic, oxidase- and catalase- positive, oval- to rod-shaped, and motile. Growth was observed at pH 6.0-9.0, salinities of 2.0-9.0 % and temperatures of 4-37 °C. The G+C content of the chromosomal DNA was 49.2 %. The respiratory quinone was determined to be Q-10. The principal fatty acids of strain PHK-P5T were C19 : 0cyclo ω8c (25.19 %), C16 : 0 (22.76 %), summed feature 8 (C18 : 1 ω7c/ω6c; 16.14 %), C14 : 0 (8.81 %), C17 : 0cyclo (8.10 %), summed feature 2 (C12 : 0 aldehyde and/or unknown 10.928; 7.19 %) and C18 : 1 ω7c 11-methyl (5.03 %). The major polar lipids were diphosphatidylglycerol, phosphatidylethanolamine and phosphatidylglycerol. The average nucleotide identity and digital DNA-DNA hybridization values among the genomes of strain PHK-P5T and the reference strains were 68.7-70.9 % and 17.4-18.1 %, respectively. The combined genotypic and phenotypic data showed that strain PHK-P5T represents a novel species within the genus Sneathiella, for which the name Sneathiella marina sp. nov. is proposed, with the type strain PHK-P5T (=MCCC M21824T=KCTC 82924T).

A Novel Identified Long Intergenic Noncoding RNA, LINC01574, Contributes to Breast Cancer Deterioration via the Regulation of miR-6745/TTYH3 Axis.

Objective: Compelling evidence suggested that lncRNAs performed vital functions in the development of breast cancer (BC). The study intended to mine the functional roles of LINC01574 in BC and further excavated its underlying regulatory mechanism. Methods: The expression and prognosis of LINC01574 in BC were detected by integrating analysis of data mining, bioinformatics, and RT-qPCR. Then, the effect of LINC01574 knockdown on BC cell growth and metastasis was evaluated in vitro and in vivo. Interactions between miR-6745 and LINC01574 or TTYH3 were revealed by both target prediction and dual luciferase reporter assay. Results: Our data found that LINC01574 was markedly elevated in BC tissues and cells and was an independent prognostic risk factor for patients with BC. Further functional studies revealed that knockdown of LINC01574 remarkably inhibited the growth and metastasis of BC cells in vitro and in vivo. Mechanistically, LINC01574 competitively binds with miR-6745 to prevent the degradation of TTYH3, thereby promoting the development of BC. Conclusion: Our results unmasked a novel LINC01574/miR-6745/TTYH3 regulatory axis in BC progression and suggested that LINC01574 might be a promising prognostic indicator and therapeutic target for patients with BC.

Relationship between non-point source pollution and fluorescence fingerprint of riverine dissolved organic matter is season dependent.

The source identification of water pollution and quantification of pollution sources are vital for water environment management. Dissolved organic matter (DOM) affects the form, solubility, and toxicity of pollutants, so the migration and transformation of DOM are crucial for water quality assessment. Therefore, the aim of this study was to identify pollution sources and quantify their contribution in water environments using fluorescence fingerprint of DOM. The Danjiangkou Reservoir and its main tributaries were selected as the study area. The DOM fluorescence components of pollution source samples were analyzed and the quantitative relationship between DOM spectral indices and nitrate isotopes (δ15N-NO3- and δ18O-NO3-) was established. It was found that humic-like substances were mainly derived from non-point source (NPS) pollution and protein-like substances were from point source (PS) pollution. The fluorescence index (FI) of DOM was positively correlated with PS pollution and negatively correlated with NPS pollution. The quantitative relationship between three-dimensional (3D) fluorescence spectra characteristics of DOM and water quality indicators or NPS pollution was established, which realized the convenient quantitative evaluation of pollution load and pollution source contribution using DOM fluorescence spectra characteristics. The strength of the correlation between DOM fluorescence spectra characteristics and water quality indicators (or NPS pollution) was affected by seasonal rainfall due to changes in the contribution of PS and NPS pollution. This study provides a new approach for source identification of water pollution and quantification of pollution sources using 3D fluorescence fingerprint of DOM.

Characterization of the complete chloroplast genome of Rhododendron henanense subsp. lingbaoense Fang.

Rhododendron henanense subsp. lingbaoense is endemic in China. The cpDNA of R. henanense subsp. lingbaoense is a typical quadripartite structure with a length of 208,015 bp, including a large single-copy region of 110,593 bp and a small single-copy region of 2606 bp separated by a pair of identical inverted repeat regions of 47,408 bp each. The chloroplast genome contains 119 genes, including 86 protein-coding genes, four ribosomal RNA genes, and 29 transfer RNA genes. The phylogenetic analysis of R. henanense subsp. lingbaoense showed a relatively close relationship with Rhododendron delavayi.

A hybrid biomaterial of biosilica and C-phycocyanin for enhanced photodynamic effect towards tumor cells.

Intricate mesoporous biosilica has many biomedical applications as a nanocarrier. However, its potential use in photodynamic therapy (PDT) has received little attention. This work reports the first fabrication of bio-engineered materials by covalently conjugating C-phycocyanin (C-PC), a natural photosensitizer, to biosilica for the PDT of tumor-associated macrophages. The resulting hybrid material showed outstanding photodynamic activity under 620 nm laser irradiation. Furthermore, it enhanced the relatively weak photodynamic effect of C-PC. This study also explored methods of biofunctionalizing biosilica for cancer phototherapy, a new pharmacological application of non-toxic C-PC.

The Role of Cyclooxygenases-2 in Benzo(a)pyrene-Induced Neurotoxicity of Cortical Neurons.

With the help of particulate matter, benzo(a)pyrene (BaP) has become a widely distributed environmental contaminant. In addition to the well-known carcinogenicity, a growing number of studies have focused on the neurotoxicity of BaP, especially on adverse neurobehavioral effects. However, the molecular modulating mechanisms remain unclear. In this paper, we confirmed that BaP exposure produced a neuronal insult via its metabolite benzo(a)pyrene diol epoxide (BPDE) on the primary cultured cortical neuron in vitro and mice in vivo models, and the effects were largely achieved by activating cyclooxygenases-2 (COX-2) enhancement. Also, the action of BaP on elevating COX-2 was initiated by BPDE firmly binding to the active pockets of COX-2, then followed by the production of prostaglandin E2 (PGE2) and upregulation of its EP2 and EP4 receptors, finally stimulating the cyclic adenosine monophosphate/protein kinase A (cAMP/PKA) signaling pathway. Our results reveal a mechanistic association underlying BaP exposure and increased risk for neurological dysfunction and clarify the ways to prevent and treat brain injuries in polluted environments.