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1.
Alzheimers Dement (Amst) ; 16(3): e12613, 2024.
Article in English | MEDLINE | ID: mdl-38966622

ABSTRACT

INTRODUCTION: Alzheimer's disease (AD) is often misclassified in electronic health records (EHRs) when relying solely on diagnosis codes. This study aimed to develop a more accurate, computable phenotype (CP) for identifying AD patients using structured and unstructured EHR data. METHODS: We used EHRs from the University of Florida Health (UFHealth) system and created rule-based CPs iteratively through manual chart reviews. The CPs were then validated using data from the University of Texas Health Science Center at Houston (UTHealth) and the University of Minnesota (UMN). RESULTS: Our best-performing CP was "patient has at least 2 AD diagnoses and AD-related keywords in AD encounters," with an F1-score of 0.817 at UF, 0.961 at UTHealth, and 0.623 at UMN, respectively. DISCUSSION: We developed and validated rule-based CPs for AD identification with good performance, which will be crucial for studies that aim to use real-world data like EHRs. Highlights: Developed a computable phenotype (CP) to identify Alzheimer's disease (AD) patients using EHR data.Utilized both structured and unstructured EHR data to enhance CP accuracy.Achieved a high F1-score of 0.817 at UFHealth, and 0.961 and 0.623 at UTHealth and UMN.Validated the CP across different demographics, ensuring robustness and fairness.

2.
medRxiv ; 2024 Feb 06.
Article in English | MEDLINE | ID: mdl-38370766

ABSTRACT

INTRODUCTION: Alzheimer's Disease (AD) are often misclassified in electronic health records (EHRs) when relying solely on diagnostic codes. This study aims to develop a more accurate, computable phenotype (CP) for identifying AD patients by using both structured and unstructured EHR data. METHODS: We used EHRs from the University of Florida Health (UF Health) system and created rule-based CPs iteratively through manual chart reviews. The CPs were then validated using data from the University of Texas Health Science Center at Houston (UT Health) and the University of Minnesota (UMN). RESULTS: Our best-performing CP is " patient has at least 2 AD diagnoses and AD-related keywords " with an F1-score of 0.817 at UF, and 0.961 and 0.623 at UT Health and UMN, respectively. DISCUSSION: We developed and validated rule-based CPs for AD identification with good performance, crucial for studies that aim to use real-world data like EHRs.

3.
Sleep ; 47(2)2024 Feb 08.
Article in English | MEDLINE | ID: mdl-37950486

ABSTRACT

STUDY OBJECTIVES: To use relatively noisy routinely collected clinical data (brain magnetic resonance imaging (MRI) data, clinical polysomnography (PSG) recordings, and neuropsychological testing), to investigate hypothesis-driven and data-driven relationships between brain physiology, structure, and cognition. METHODS: We analyzed data from patients with clinical PSG, brain MRI, and neuropsychological evaluations. SynthSeg, a neural network-based tool, provided high-quality segmentations despite noise. A priori hypotheses explored associations between brain function (measured by PSG) and brain structure (measured by MRI). Associations with cognitive scores and dementia status were studied. An exploratory data-driven approach investigated age-structure-physiology-cognition links. RESULTS: Six hundred and twenty-three patients with sleep PSG and brain MRI data were included in this study; 160 with cognitive evaluations. Three hundred and forty-two participants (55%) were female, and age interquartile range was 52 to 69 years. Thirty-six individuals were diagnosed with dementia, 71 with mild cognitive impairment, and 326 with major depression. One hundred and fifteen individuals were evaluated for insomnia and 138 participants had an apnea-hypopnea index equal to or greater than 15. Total PSG delta power correlated positively with frontal lobe/thalamic volumes, and sleep spindle density with thalamic volume. rapid eye movement (REM) duration and amygdala volume were positively associated with cognition. Patients with dementia showed significant differences in five brain structure volumes. REM duration, spindle, and slow-oscillation features had strong associations with cognition and brain structure volumes. PSG and MRI features in combination predicted chronological age (R2 = 0.67) and cognition (R2 = 0.40). CONCLUSIONS: Routine clinical data holds extended value in understanding and even clinically using brain-sleep-cognition relationships.


Subject(s)
Dementia , Sleep , Humans , Female , Middle Aged , Aged , Male , Sleep/physiology , Brain/diagnostic imaging , Cognition , Sleep, REM/physiology
4.
Entropy (Basel) ; 23(11)2021 Oct 24.
Article in English | MEDLINE | ID: mdl-34828088

ABSTRACT

Despite the importance of few-shot learning, the lack of labeled training data in the real world makes it extremely challenging for existing machine learning methods because this limited dataset does not well represent the data variance. In this research, we suggest employing a generative approach using variational autoencoders (VAEs), which can be used specifically to optimize few-shot learning tasks by generating new samples with more intra-class variations on the Labeled Faces in the Wild (LFW) dataset. The purpose of our research is to increase the size of the training dataset using various methods to improve the accuracy and robustness of the few-shot face recognition. Specifically, we employ the VAE generator to increase the size of the training dataset, including the basic and the novel sets while utilizing transfer learning as the backend. Based on extensive experimental research, we analyze various data augmentation methods to observe how each method affects the accuracy of face recognition. The face generation method based on VAEs with perceptual loss can effectively improve the recognition accuracy rate to 96.47% using both the base and the novel sets.

5.
Curr Top Med Chem ; 19(31): 2919-2936, 2019.
Article in English | MEDLINE | ID: mdl-31763974

ABSTRACT

Cilostazol is a unique platelet inhibitor that has been used clinically for more than 20 years. As a phosphodiesterase type III inhibitor, cilostazol is capable of reversible inhibition of platelet aggregation and vasodilation, has antiproliferative effects, and is widely used in the treatment of peripheral arterial disease, cerebrovascular disease, percutaneous coronary intervention, etc. This article briefly reviews the pharmacological mechanisms and clinical application of cilostazol.


Subject(s)
Cilostazol/pharmacology , Platelet Aggregation Inhibitors/pharmacology , Platelet Aggregation/drug effects , Cell Proliferation/drug effects , Cilostazol/chemistry , Humans , Molecular Structure , Platelet Aggregation Inhibitors/chemistry
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