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1.
CEN Case Rep ; 10(4): 510-514, 2021 11.
Article in English | MEDLINE | ID: mdl-33837952

ABSTRACT

Glomerulopathy with Fibronectin Deposits (GFND) is a rare, autosomal dominant disease characterized by proteinuria, hematuria and progressive renal failure associated with glomerular deposition of fibronectin, frequently resulting in end-stage renal disease (ESRD). There is no established treatment for this condition beyond conservative measures such as blood pressure control and the use of angiotensin-converting enzyme (ACE) inhibitors. We present a case of GFND associated with progressive chronic kidney disease (CKD) and nephrotic range proteinuria showing a sustained response to prednisone treatment. A 27-year-old G2P2 Caucasian female presented with 3 g/day of proteinuria, serum creatinine (Cr) 0.7 mg/dL, inactive urinary sediment and normotension without medication. She was part of a large family with glomerular disease, including three members who died of cerebral hemorrhage or stroke in their thirties. The patient's kidney biopsy showed mesangial deposition of fibronectin consistent with GFND. No interstitial fibrosis was seen. Genotyping revealed the Y973C FN1 gene mutation. Despite maximal tolerable ACE inhibition, proteinuria increased to 4-6 g/g Cr and serum Cr increased to 1.0 mg/dL. She was treated with prednisone 60 mg (~ 1 mg/Kg) daily for 2 mos and then tapered by ~ 0.2 mg/Kg every month for 6 mos of total therapy. Proteinuria decreased to ~ 1 g/g Cr for > 5 years and serum Cr stabilized in the 1.2 mg/dL range with treatment. No significant side effects were encountered. In conclusion, this protocol should be considered in GFND patients with nephrotic range proteinuria despite maximal angiotensin system inhibition who have relatively preserved renal function.


Subject(s)
Glomerulonephritis, Membranoproliferative/drug therapy , Glucocorticoids/therapeutic use , Prednisone/therapeutic use , Adult , Female , Glomerulonephritis, Membranoproliferative/genetics , Glomerulonephritis, Membranoproliferative/pathology , Humans , Kidney/ultrastructure , Remission Induction
2.
Sci Rep ; 9(1): 10019, 2019 Jul 05.
Article in English | MEDLINE | ID: mdl-31273219

ABSTRACT

A correction to this article has been published and is linked from the HTML and PDF versions of this paper. The error has been fixed in the paper.

3.
PLoS One ; 13(11): e0206407, 2018.
Article in English | MEDLINE | ID: mdl-30388136

ABSTRACT

The aryl hydrocarbon receptor (AHR) is a ligand activated bHLH transcription factor that belongs to the Per-Arnt-Sim (PAS) superfamily of proteins involved in mediating responses to cellular environment regulating normal physiological and developmental pathways. The AHR binds a broad range of naturally derived and synthetic compounds, and plays a major role in mediating effects of certain environmental chemicals. Although our understanding of the physiological roles of the AHR in the immune system is evolving, there is little known about its role in hematopoiesis and hematopoietic diseases. Prior studies demonstrated that AHR null (AHR-KO) mice have impaired hematopoietic stem cell (HSC) function; they develop myeloproliferative changes in peripheral blood cells, and alterations in hematopoietic stem and progenitor cell populations in the bone marrow. We hypothesized mice lacking AHR expression only within hematopoietic cells (AHRVav1 mice) would develop similar changes. However, we did not observe a complete phenocopy of AHR-KO and AHRVav1 animals at 2 or 18 months of age. To illuminate the signaling mechanisms underlying the alterations in hematopoiesis observed in these mice, we sorted a population of cells highly enriched for HSC function (LSK cells: CD34-CD48-CD150+) and performed microarray analyses. Ingenuity Pathway and Gene Set Enrichment Analyses revealed that that loss of AHR within HSCs alters several gene and signaling networks important for HSC function. Differences in gene expression networks among HSCs from AHR-KO and AHRVav1 mice suggest that AHR in bone marrow stromal cells also contributes to HSC function. In addition, numerous studies have suggested a role for AHR in both regulation of hematopoietic cells, and in the development of blood diseases. More work is needed to define what these signals are, and how they act upon HSCs.


Subject(s)
Basic Helix-Loop-Helix Transcription Factors/deficiency , Basic Helix-Loop-Helix Transcription Factors/genetics , Gene Deletion , Hematopoietic Stem Cells/metabolism , Receptors, Aryl Hydrocarbon/deficiency , Receptors, Aryl Hydrocarbon/genetics , Transcriptome/genetics , Animals , Basic Helix-Loop-Helix Transcription Factors/metabolism , Hematopoietic Stem Cells/cytology , Mice , Phenotype , Receptors, Aryl Hydrocarbon/metabolism , Signal Transduction/genetics
4.
Sci Rep ; 8(1): 1630, 2018 01 26.
Article in English | MEDLINE | ID: mdl-29374238

ABSTRACT

Candida albicans is a diploid fungus and a predominant opportunistic human pathogen. Notably, C. albicans employs reversible chromosomal aneuploidies as a means of survival in adverse environments. We previously characterized transcription on the monosomic chromosome 5 (Ch5) that arises with adaptation to growth on the toxic sugar sorbose in the mutant Sor125(55). We now extend this analysis to the trisomic hybrid Ch4/7 within Sor125(55) and a diverse group of three mutants harboring a single Ch5. We find a similar pattern of transcriptional changes on either type of aneuploid chromosome within these mutants wherein expression of many genes follows chromosome ploidy, consistent with a direct mechanism to regulate genes important for adaptation to growth. In contrast, a significant number of genes are expressed at the disomic level, implying distinct mechanisms compensating for gene dose on monosomic or trisomic chromosomes consistent with maintaining cell homeostasis. Finally, we find evidence for an additional mechanism that elevates expression of genes on normal disomic Ch4 and Ch7 in mutants to levels commensurate with that found on the trisomic Ch4/7b in Sor125(55). Several of these genes are similarly differentially regulated among mutants, suggesting they play key functions in either maintaining aneuploidy or adaptation to growth conditions.


Subject(s)
Adaptation, Biological , Aneuploidy , Candida albicans/genetics , Chromosomes, Fungal , Gene Expression Regulation , Sorbose/toxicity , Transcription, Genetic , Candida albicans/drug effects
5.
Epigenetics Chromatin ; 10(1): 52, 2017 11 07.
Article in English | MEDLINE | ID: mdl-29115969

ABSTRACT

After the publication of this work [1], it was noticed that an initial was missing from the author name: Jeffrey Hayes. His name should be written as: Jeffrey J. Hayes.

6.
Epigenetics Chromatin ; 10(1): 49, 2017 10 23.
Article in English | MEDLINE | ID: mdl-29061172

ABSTRACT

BACKGROUND: The major human fungal pathogen Candida albicans possesses a diploid genome, but responds to growth in challenging environments by employing chromosome aneuploidy as an adaptation mechanism. For example, we have shown that C. albicans adapts to growth on the toxic sugar L-sorbose by transitioning to a state in which one chromosome (chromosome 5, Ch5) becomes monosomic. Moreover, analysis showed that while expression of many genes on the monosomic Ch5 is altered in accordance with the chromosome ploidy, expression of a large fraction of genes is increased to the normal diploid level, presumably compensating for gene dose. RESULTS: In order to understand the mechanism of the apparent dosage compensation, we now report genome-wide ChIP-microarray assays for a sorbose-resistant strain harboring a monosomic Ch5. These data show a significant chromosome-wide elevation in histone H4 acetylation on the mCh5, but not on any other chromosome. Importantly, strains lacking subunits of the NuA4 H4 histone acetyltransferase complex, orthologous to a complex previously shown in Drosophila to be associated with a similar gene dosage compensation mechanism, did not show an increase in H4 acetylation. Moreover, loss of NuA4 subunits severely compromised the adaptation to growth on sorbose. CONCLUSIONS: Our results are consistent with a model wherein chromosome-wide elevation of H4 acetylation mediated by the NuA4 complex plays a role in increasing gene expression in compensation for gene dose and adaption to growth in a toxic environment.


Subject(s)
Drug Resistance, Fungal , Fungal Proteins/metabolism , Histone Acetyltransferases/metabolism , Histones/metabolism , Protein Processing, Post-Translational , Acetylation , Candida albicans/enzymology , Candida albicans/genetics , Candida albicans/metabolism , Dosage Compensation, Genetic , Fungal Proteins/genetics , Gene Expression Regulation, Fungal , Histone Acetyltransferases/genetics , Monosomy
7.
PLoS One ; 11(5): e0155347, 2016.
Article in English | MEDLINE | ID: mdl-27228053

ABSTRACT

We have previously shown that regulatory T cells (Tregs) infiltrating follicular lymphoma lymph nodes are quantitatively and qualitatively different than those infiltrating normal and reactive nodes. To gain insight into how such Treg populations differ, we performed RNA sequence (RNAseq) analyses on flow sorted Tregs from all three sources. We identify several molecules that could contribute to the observed increased suppressive capacity of follicular lymphoma nodal tregs, including upregulation of CTLA-4, IL-10, and GITR, all confirmed by protein expression. In addition, we identify, and confirm functionally, a novel mechanism by which Tregs target to and accumulate within a human tumor microenvironment, through the down regulation of S1PR1, SELL (L-selectin) and CCR7, potentially resulting in greater lymph node retention. In addition we identify and confirm functionally the upregulation of the chemokine receptor CXCR5 as well as the secretion of the chemokines CXCL13 and IL-16 demonstrating the unique ability of the follicular derived Tregs to localize and accumulate within not only the malignant lymph node, but also localize and accumulate within the malignant B cell follicle itself. Such findings offer significant new insights into how follicular lymphoma nodal Tregs may contribute to the biology of follicular lymphoma and identify several novel therapeutic targets.


Subject(s)
Cell Movement/immunology , Gene Expression Regulation, Neoplastic/immunology , Lymph Nodes/immunology , Lymphoma, Follicular/immunology , Neoplasm Proteins/immunology , T-Lymphocytes, Regulatory/immunology , Transcriptome/immunology , B-Lymphocytes/immunology , B-Lymphocytes/pathology , Female , Gene Expression Profiling , Humans , Lymph Nodes/pathology , Lymphoma, Follicular/pathology , Male , T-Lymphocytes, Regulatory/pathology , Up-Regulation/immunology
8.
PLoS One ; 10(9): e0138110, 2015.
Article in English | MEDLINE | ID: mdl-26413862

ABSTRACT

Current approaches to study transcriptional profiles post influenza infection typically rely on tissue sampling from one or two sites at a few time points, such as spleen and lung in murine models. In this study, we infected female C57/BL6 mice intranasally with mouse-adapted H3N2/Hong Kong/X31 avian influenza A virus, and then analyzed the gene expression profiles in four different compartments (blood, lung, mediastinal lymph nodes, and spleen) over 11 consecutive days post infection. These data were analyzed by an advanced statistical procedure based on ordinary differential equation (ODE) modeling. Vastly different lists of significant genes were identified by the same statistical procedure in each compartment. Only 11 of them are significant in all four compartments. We classified significant genes in each compartment into co-expressed modules based on temporal expression patterns. We then performed functional enrichment analysis on these co-expression modules and identified significant pathway and functional motifs. Finally, we used an ODE based model to reconstruct gene regulatory network (GRN) for each compartment and studied their network properties.


Subject(s)
Gene Regulatory Networks , Immunity/genetics , Influenza A virus/physiology , Organ Specificity/genetics , Orthomyxoviridae Infections/genetics , Orthomyxoviridae Infections/immunology , Adaptive Immunity/genetics , Animals , Female , Gene Expression Profiling , Gene Expression Regulation , Immunity, Innate/genetics , Lung/metabolism , Lymph Nodes/metabolism , Mice, Inbred C57BL , Orthomyxoviridae Infections/virology , Time Factors , Transcriptome/genetics
9.
PLoS One ; 10(7): e0133791, 2015.
Article in English | MEDLINE | ID: mdl-26208102

ABSTRACT

Dysregulation of hematopoietic stem cell (HSC) signaling can contribute to the development of diseases of the blood system. Lack of aryl hydrocarbon receptor (AhR) has been associated with alterations in gene expression related to HSC function and the subsequent development of a myeloproliferative disorder in aging female mice. We sorted the most primitive population of HSCs with the highest stem cell potential (Long-term, or LT-HSCs) from 18-month-old AhR-null-allele (AhR-KO) and WT mice and analyzed gene expression using microarray to determine alterations in gene expression and cell signaling networks in HSCs that could potentially contribute to the aging phenotype of AhR-KO mice. Comparisons with previous array data from 8-week old mice indicated that aging alone is sufficient to alter gene expression. In addition, a significant number of gene expression differences were observed in aged LT-HSCs that are dependent on both aging and lack of AhR. Pathway analysis of these genes revealed networks related to hematopoietic stem cell activity or function. qPCR was used to confirm the differential expression of a subset of these genes, focusing on genes that may represent novel AhR targets due to the presence of a putative AhR binding site in their upstream regulatory region. We verified differential expression of PDGF-D, Smo, Wdfy1, Zbtb37 and Zfp382. Pathway analysis of this subset of genes revealed overlap between cellular functions of the novel AhR targets and AhR itself. Lentiviral-mediated knockdown of AhR in lineage-negative hematopoietic cells was sufficient to induce changes in all five of the candidate AhR targets identified. Taken together, these data suggest a role for AhR in HSC functional regulation, and identify novel HSC AhR target genes that may contribute to the phenotypes observed in AhR-KO mice.


Subject(s)
Aging/genetics , Basic Helix-Loop-Helix Transcription Factors/genetics , Hematopoietic Stem Cells/metabolism , Receptors, Aryl Hydrocarbon/genetics , Transcriptome , Animals , Cluster Analysis , Female , Gene Expression Profiling , Gene Expression Regulation , Gene Knockdown Techniques , Gene Regulatory Networks , Mice , Mice, Knockout , Phenotype , Reproducibility of Results , Signal Transduction
10.
J Clin Invest ; 124(7): 3200-14, 2014 Jul.
Article in English | MEDLINE | ID: mdl-24892805

ABSTRACT

NOTCH-dependent signaling pathways are critical for normal bone remodeling; however, it is unclear if dysfunctional NOTCH activation contributes to inflammation-mediated bone loss, as observed in rheumatoid arthritis (RA) patients. We performed RNA sequencing and pathway analyses in mesenchymal stem cells (MSCs) isolated from transgenic TNF-expressing mice, a model of RA, to identify pathways responsible for decreased osteoblast differentiation. 53 pathways were dysregulated in MSCs from RA mice, among which expression of genes encoding NOTCH pathway members and members of the noncanonical NF-κB pathway were markedly elevated. Administration of NOTCH inhibitors to RA mice prevented bone loss and osteoblast inhibition, and CFU-fibroblasts from RA mice treated with NOTCH inhibitors formed more new bone in recipient mice with tibial defects. Overexpression of the noncanonical NF-κB subunit p52 and RELB in a murine pluripotent stem cell line increased NOTCH intracellular domain-dependent (NICD-dependent) activation of an RBPjκ reporter and levels of the transcription factor HES1. TNF promoted p52/RELB binding to NICD, which enhanced binding at the RBPjκ site within the Hes1 promoter. Furthermore, MSC-enriched cells from RA patients exhibited elevated levels of HES1, p52, and RELB. Together, these data indicate that persistent NOTCH activation in MSCs contributes to decreased osteoblast differentiation associated with RA and suggest that NOTCH inhibitors could prevent inflammation-mediated bone loss.


Subject(s)
Arthritis, Rheumatoid/metabolism , NF-kappa B/metabolism , Osteoblasts/metabolism , Receptors, Notch/metabolism , Animals , Arthritis, Rheumatoid/drug therapy , Arthritis, Rheumatoid/pathology , Basic Helix-Loop-Helix Transcription Factors/genetics , Bone Resorption/metabolism , Bone Resorption/pathology , Bone Resorption/prevention & control , Cell Differentiation , Dipeptides/pharmacology , Disease Models, Animal , Gene Expression , Homeodomain Proteins/genetics , Humans , Mesenchymal Stem Cells/drug effects , Mesenchymal Stem Cells/metabolism , Mesenchymal Stem Cells/pathology , Mice , Mice, Inbred C57BL , Mice, Knockout , Mice, Transgenic , NF-kappa B/genetics , NF-kappa B p52 Subunit/genetics , NF-kappa B p52 Subunit/metabolism , Osteoblasts/drug effects , Osteoblasts/pathology , Promoter Regions, Genetic , Receptors, Notch/antagonists & inhibitors , Receptors, Notch/genetics , Signal Transduction , Transcription Factor HES-1 , Transcription Factor RelB/genetics , Transcription Factor RelB/metabolism , Tumor Necrosis Factor-alpha/genetics , Tumor Necrosis Factor-alpha/metabolism
11.
Stem Cells Dev ; 23(2): 95-106, 2014 Jan 15.
Article in English | MEDLINE | ID: mdl-24138668

ABSTRACT

Loss of immune function and increased hematopoietic disease are among the most clinically significant consequences of aging. Hematopoietic stem cells (HSCs) from mice lacking aryl hydrocarbon receptor (AhR) have high rates of cell division. Studies were designed to test the hypothesis that aging AhR-null allele (AhR-KO) mice develop premature HSC exhaustion, and changes leading to hematological disease. Compared to wild-type, aging AhR-KO mice showed a decreased survival rate, splenomegaly, increased circulating white blood cells, hematopoietic cell accumulation in tissues, and anemia. Analysis of bone marrow indicated increased numbers of stem/progenitor and lineage-committed cells, but decreased erythroid progenitors. There was also decreased self-renewal capacity of HSCs determined by competitive repopulation and serial transplantation. HSCs also showed increased levels of reactive oxygen species (ROS), Ki-67, and γ-H2A.X, but decreased p16(Ink4a). Splenic cells from aging KO mice had abnormal expression of genes, including Gata-1, Sh2d3c, Gfi-1, p21, and c-myc, involved in trafficking and associated with leukemia. HSCs from AhR-KO mice had gene changes related to HSC maintenance and consistent with phenotype observed. The most prominent gene changes (overexpression of Srpk2, Creb1, Hes1, mtor, pdp1) have been associated with HSC hyperproliferation, leukemia, and accelerated aging. Pathway analyses also indicated an enrichment of genes associated with oxidative stress, acute myelogenous leukemia, aging, and heat shock response, and the ß-catenin/Wnt pathways. These data indicate that loss of AhR and associated changes in multiple signaling pathways promote premature HSC exhaustion and development of a myeloproliferative disorder. They also implicate a critical role of the AhR in the regulation of HSCs.


Subject(s)
Aging/genetics , Aging/immunology , Basic Helix-Loop-Helix Transcription Factors/genetics , Hematopoietic Stem Cells/cytology , Myeloproliferative Disorders/genetics , Receptors, Aryl Hydrocarbon/genetics , Anemia/genetics , Animals , Bone Marrow Cells/cytology , Cell Movement/genetics , Cell Movement/immunology , Cell Proliferation , Cyclin-Dependent Kinase Inhibitor p16/biosynthesis , Female , Gene Expression/genetics , Hematopoietic Stem Cell Transplantation , Histones/biosynthesis , Ki-67 Antigen/biosynthesis , Leukocyte Count , Mice , Mice, Inbred C57BL , Mice, Knockout , Oxidative Stress/genetics , Reactive Oxygen Species/metabolism , Signal Transduction/genetics , Splenomegaly/genetics , Survival Rate
12.
Proc Natl Acad Sci U S A ; 110(45): 18162-7, 2013 Nov 05.
Article in English | MEDLINE | ID: mdl-24145431

ABSTRACT

Loss of muscle mass, or sarcopenia, is nearly universal in cirrhosis and adversely affects patient outcome. The underlying cross-talk between the liver and skeletal muscle mediating sarcopenia is not well understood. Hyperammonemia is a consistent abnormality in cirrhosis due to impaired hepatic detoxification to urea. We observed elevated levels of ammonia in both plasma samples and skeletal muscle biopsies from cirrhotic patients compared with healthy controls. Furthermore, skeletal muscle from cirrhotics had increased expression of myostatin, a known inhibitor of skeletal muscle accretion and growth. In vivo studies in mice showed that hyperammonemia reduced muscle mass and strength and increased myostatin expression in wild-type compared with postdevelopmental myostatin knockout mice. We postulated that hyperammonemia is an underlying link between hepatic dysfunction in cirrhosis and skeletal muscle loss. Therefore, murine C2C12 myotubes were treated with ammonium acetate resulting in intracellular concentrations similar to those in cirrhotic muscle. In this system, we demonstrate that hyperammonemia stimulated myostatin expression in a NF-κB-dependent manner. This finding was also observed in primary murine muscle cell cultures. Hyperammonemia triggered activation of IκB kinase, NF-κB nuclear translocation, binding of the NF-κB p65 subunit to specific sites within the myostatin promoter, and stimulation of myostatin gene transcription. Pharmacologic inhibition or gene silencing of NF-κB abolished myostatin up-regulation under conditions of hyperammonemia. Our work provides unique insights into hyperammonemia-induced myostatin expression and suggests a mechanism by which sarcopenia develops in cirrhotic patients.


Subject(s)
Gene Expression Regulation/physiology , Hyperammonemia/physiopathology , Liver Cirrhosis/complications , Myostatin/metabolism , NF-kappa B/metabolism , Acetates , Animals , Chromatin Immunoprecipitation , Electrophoretic Mobility Shift Assay , Humans , Hyperammonemia/etiology , Immunoblotting , Mice , Mice, Knockout , Microscopy, Confocal , Muscle Fibers, Skeletal/metabolism , Myostatin/genetics , Real-Time Polymerase Chain Reaction
13.
Sci Rep ; 3: 2327, 2013.
Article in English | MEDLINE | ID: mdl-23900141

ABSTRACT

To identify sources of inter-subject variation in vaccine responses, we performed high-frequency sampling of human peripheral blood cells post-vaccination, followed by a novel systems biology analysis. Functional principal component analysis was used to examine time varying B cell vaccine responses. In subjects vaccinated within the previous three years, 90% of transcriptome variation was explained by a single subject-specific mathematical pattern. Within individual vaccine response patterns, a common subset of 742 genes was strongly correlated with migrating plasma cells. Of these, 366 genes were associated with human plasmablasts differentiating in vitro. Additionally, subject-specific temporal transcriptome patterns in peripheral blood mononuclear cells identified migration of myeloid/dendritic cell lineage cells one day after vaccination. Upstream analyses of transcriptome changes suggested both shared and subject-specific transcription groups underlying larger patterns. With robust statistical methods, time-varying response characteristics of individual subjects were effectively captured along with a shared plasma cell gene signature.


Subject(s)
B-Lymphocytes/drug effects , B-Lymphocytes/immunology , Gene Expression Regulation/genetics , Gene Expression Regulation/immunology , Influenza Vaccines/administration & dosage , Influenza Vaccines/immunology , Transcriptome/immunology , Blood Proteins/genetics , Blood Proteins/immunology , Cells, Cultured , Gene Expression Regulation/drug effects , Humans , Transcriptome/drug effects
14.
Antimicrob Agents Chemother ; 57(10): 5026-36, 2013 Oct.
Article in English | MEDLINE | ID: mdl-23896475

ABSTRACT

Candida albicans is a prevailing fungal pathogen with a diploid genome that can adapt to environmental stresses by losing or gaining an entire chromosome or a large portion of a chromosome. We have previously found that the loss of one copy of chromosome 5 (Ch5) allows for adaptation to the toxic sugar l-sorbose. l-Sorbose is similar to caspofungin and other antifungals from the echinocandins class, in that it represses synthesis of cell wall glucan in fungi. Here, we extended the study of the phenotypes controlled by Ch5 copy number. We examined 57 strains, either disomic or monosomic for Ch5 and representing five different genetic backgrounds, and found that the monosomy of Ch5 causes elevated levels of chitin and repressed levels of 1,3-ß-glucan components of the cell wall, as well as diminished cellular ergosterol. Increased deposition of chitin in the cell wall could be explained, at least partially, by a 2-fold downregulation of CHT2 on the monosomic Ch5 that encodes chitinase and a 1.5-fold upregulation of CHS7 on Ch1 that encodes the protein required for wild-type chitin synthase III activity. Other important outcomes of Ch5 monosomy consist of susceptibility changes to agents representing four major classes of antifungals. Susceptibility to caspofungin increased or decreased and susceptibility to 5-fluorocytosine decreased, whereas susceptibility to fluconazole and amphotericin B increased. Our results suggest that Ch5 monosomy represents an unrecognized C. albicans regulatory strategy that impinges on multiple stress response pathways.


Subject(s)
Antifungal Agents/pharmacology , Candida albicans/drug effects , Candida albicans/genetics , Chromosomes, Fungal/genetics , Amphotericin B/pharmacology , Caspofungin , Echinocandins/pharmacology , Fluconazole/pharmacology , Flucytosine/pharmacology , Lipopeptides
15.
Am J Physiol Endocrinol Metab ; 304(10): E1042-52, 2013 May 15.
Article in English | MEDLINE | ID: mdl-23531613

ABSTRACT

Although catabolic signaling has a well-established role in muscle wasting during cancer cachexia, the suppression of anabolic signaling also warrants further investigation. In cachectic tumor-bearing mice, circulating IL-6 levels are associated with suppressed muscle protein synthesis and mTORC1 signaling. We have found AMPK and IGF-I/insulin signaling, two well-known regulators of the mammalian target of rapamycin (mTOR), are altered with the progression of cachexia. How IL-6 can induce suppression of mTORC1 signaling remains to be established. The purpose of this study was to examine mTOR complex 1 (mTORC1) activation and regulation by IL-6 during cancer cachexia. IL-6 effects on mTOR activation were examined in Apc(Min/+) mouse skeletal muscle and C2C12 myotubes. Systemic IL-6 overexpression in Apc(Min/+) mice produced a dose-dependent suppression of mTOR signaling that corresponded to induction of STAT3 and AMPK phosphorylation. This result was also evident in IL-6-treated myotubes. Basal mTOR activation and mTOR responsiveness to glucose administration were suppressed in cachectic skeletal muscle. However, insulin induction of mTOR activity was maintained in IL-6-treated myotubes. Whereas IL-6 suppression of myotube mTOR activity was rescued by AMPK inhibition, inhibition of STAT3 signaling was not sufficient to rescue IL-6 suppression of mTOR activity. Last, treadmill exercise training was able to prevent IL-6-induced inhibition of mTOR signaling in Apc(Min/+) mice independently of activated STAT. In conclusion, we report dose-dependent suppression of mTOR activity by IL-6 and suppressed mTOR responsiveness to glucose administration in Apc(Min/+) mice. IL-6 suppression of mTOR activity was dependent on AMPK activation and independent of STAT signaling in myotubes.


Subject(s)
AMP-Activated Protein Kinases/metabolism , Cachexia/metabolism , Interleukin-6/metabolism , Muscle, Skeletal/metabolism , Neoplasms, Experimental/metabolism , Proteins/metabolism , AMP-Activated Protein Kinases/antagonists & inhibitors , AMP-Activated Protein Kinases/genetics , Aminoimidazole Carboxamide/pharmacology , Animals , Blotting, Western , Cachexia/enzymology , Interleukin-6/blood , Interleukin-6/pharmacology , Mechanistic Target of Rapamycin Complex 1 , Mice , Mice, Inbred C57BL , Multiprotein Complexes , Muscle Fibers, Skeletal/enzymology , Muscle Fibers, Skeletal/metabolism , Muscle, Skeletal/enzymology , Neoplasms, Experimental/enzymology , Phosphorylation , Physical Conditioning, Animal/physiology , Proteins/antagonists & inhibitors , Proteins/genetics , Pyrazoles/pharmacology , Pyrimidines/pharmacology , RNA, Messenger/chemistry , RNA, Messenger/genetics , Real-Time Polymerase Chain Reaction , Recombinant Proteins/pharmacology , STAT3 Transcription Factor/antagonists & inhibitors , STAT3 Transcription Factor/metabolism , Signal Transduction , TOR Serine-Threonine Kinases
16.
Methods Mol Biol ; 972: 1-13, 2013.
Article in English | MEDLINE | ID: mdl-23385528

ABSTRACT

This chapter briefly reviews how laboratories generate microarray data. This information may give data analysts a better appreciation of the technical sources of variability in the data and the importance of minimizing such variability by normalization methods or exclusion of aberrant arrays.


Subject(s)
Gene Expression Profiling/methods , Oligonucleotide Array Sequence Analysis/methods , Animals , Base Sequence , Computational Biology , DNA Primers/genetics , Data Interpretation, Statistical , Gene Expression Profiling/standards , Humans , Image Processing, Computer-Assisted , Oligonucleotide Array Sequence Analysis/standards
17.
Mol Cell Endocrinol ; 365(2): 174-86, 2013 Jan 30.
Article in English | MEDLINE | ID: mdl-23116773

ABSTRACT

Low endogenous testosterone production, known as hypogonadism is commonly associated with conditions inducing muscle wasting. Akt signaling can control skeletal muscle mass through mTOR regulation of protein synthesis and FoxO regulation of protein degradation, and this pathway has been previously identified as a target of androgen signaling. However, the testosterone sensitivity of Akt/mTOR signaling requires further understanding in order to grasp the significance of varied testosterone levels seen with wasting disease on muscle protein turnover regulation. Therefore, the purpose of this study is to determine the effect of androgen availability on muscle Akt/mTORC1/FoxO3a regulation in skeletal muscle and cultured C(2)C(12) myotubes. C57BL/6 mice were either castrated for 42 days or castrated and treated with the nandrolone decanoate (ND) (6 mg/kg bw/wk). Testosterone loss (TL) significantly decreased volitional grip strength, body weight, and gastrocnemius (GAS) muscle mass, and ND reversed these changes. Related to muscle mass regulation, TL decreased muscle IGF-1 mRNA, the rate of myofibrillar protein synthesis, Akt phosphorylation, and the phosphorylation of Akt targets, GSK3ß, PRAS40 and FoxO3a. TL induced expression of FoxO transcriptional targets, MuRF1, atrogin1 and REDD1. Muscle AMPK and raptor phosphorylation, mTOR inhibitors, were not altered by low testosterone. ND restored IGF-1 expression and Akt/mTORC1 signaling while repressing expression of FoxO transcriptional targets. Testosterone (T) sensitivity of Akt/mTORC1 signaling was examined in C(2)C(12) myotubes, and mTOR phosphorylation was induced independent of Akt activation at low T concentrations, while a higher T concentration was required to activate Akt signaling. Interestingly, low concentration T was sufficient to amplify myotube mTOR and Akt signaling after 24 h of T withdrawal, demonstrating the potential in cultured myotubes for a T initiated positive feedback mechanism to amplify Akt/mTOR signaling. In summary, androgen withdrawal decreases muscle myofibrillar protein synthesis through Akt/mTORC1 signaling, which is independent of AMPK activation, and readily reversible by anabolic steroid administration. Acute Akt activation in C(2)C(12) myotubes is sensitive to a high concentration of testosterone, and low concentrations of testosterone can activate mTOR signaling independent of Akt.


Subject(s)
Forkhead Transcription Factors/metabolism , Muscle Fibers, Skeletal/metabolism , Proteins/metabolism , Proto-Oncogene Proteins c-akt/metabolism , Testosterone/physiology , Adenylate Kinase/metabolism , Androgens/pharmacology , Animals , Cell Line , Enzyme Activation , Forkhead Box Protein O3 , Gene Expression , Insulin-Like Growth Factor I/genetics , Insulin-Like Growth Factor I/metabolism , Male , Mechanistic Target of Rapamycin Complex 1 , Mice , Mice, Inbred C57BL , Multiprotein Complexes , Muscle Fibers, Skeletal/drug effects , Muscle Fibers, Skeletal/physiology , Muscle Strength , Muscle, Skeletal/drug effects , Muscle, Skeletal/metabolism , Muscle, Skeletal/physiology , Nandrolone/analogs & derivatives , Nandrolone/pharmacology , Nandrolone Decanoate , Orchiectomy , Phosphorylation , Protein Processing, Post-Translational , Receptors, Androgen/genetics , Receptors, Androgen/metabolism , Signal Transduction , TOR Serine-Threonine Kinases , Transcriptional Activation
18.
Am J Pathol ; 181(2): 441-51, 2012 Aug.
Article in English | MEDLINE | ID: mdl-22677423

ABSTRACT

Oxygen exposure in premature infants is a major risk factor for bronchopulmonary dysplasia and can impair the host response to respiratory viral infections later in life. Similarly, adult mice exposed to hyperoxia as neonates display alveolar simplification associated with a reduced number of alveolar epithelial type II cells and exhibit persistent inflammation, fibrosis, and mortality when infected with influenza A virus. Because type II cells participate in innate immunity and alveolar repair, their loss may contribute to oxygen-mediated sensitivity to viral infection. A genomewide screening of type II cells identified eosinophil-associated RNase 1 (Ear1). Ear1 was also detected in airway epithelium and was reduced in lungs of mice exposed to neonatal hyperoxia. Electroporation-mediated gene delivery of Ear1 to the lung before infection successfully reduced viral replication and leukocyte recruitment during infection. It also diminished the enhanced morbidity and mortality attributed to neonatal hyperoxia. These findings demonstrate that novel epithelial expression of Ear1 functions to limit influenza A virus infection, and its loss contributes to oxygen-associated epithelial injury and fibrosis after infection. People born prematurely may have defects in epithelial innate immunity that increase their risk for respiratory viral infections.


Subject(s)
Eosinophil-Derived Neurotoxin/metabolism , Epithelium/metabolism , Influenza A virus/physiology , Orthomyxoviridae Infections/metabolism , Orthomyxoviridae Infections/virology , Oxygen/pharmacology , Ribonucleases/metabolism , Aging/pathology , Air , Alveolar Epithelial Cells/drug effects , Alveolar Epithelial Cells/metabolism , Alveolar Epithelial Cells/pathology , Animals , Animals, Newborn , Electroporation , Epithelium/drug effects , Epithelium/pathology , Epithelium/virology , Female , Gene Transfer Techniques , Hyperoxia/complications , Hyperoxia/pathology , Hyperoxia/virology , Influenza A virus/drug effects , Mice , Mice, Inbred C57BL , Mice, Transgenic , Orthomyxoviridae Infections/pathology , Orthomyxoviridae Infections/prevention & control
19.
Sci Rep ; 2: 345, 2012.
Article in English | MEDLINE | ID: mdl-22468229

ABSTRACT

During the human B cell (Bc) recall response, rapid cell division results in multiple Bc subpopulations. The TLR-9 agonist CpG oligodeoxynucleotide, combined with cytokines, causes Bc activation and division in vitro and increased CD27 surface expression in a sub-population of Bc. We hypothesized that the proliferating CD27(lo) subpopulation, which has a lower frequency of antibody-secreting cells (ASC) than CD27(hi) plasmablasts, provides alternative functions such as cytokine secretion, costimulation, or antigen presentation. We performed genome-wide transcriptional analysis of CpG activated Bc sorted into undivided, proliferating CD27(lo) and proliferating CD27(hi) subpopulations. Our data supported an alternative hypothesis, that CD27(lo) cells are a transient pre-plasmablast population, expressing genes associated with Bc receptor editing. Undivided cells had an active transcriptional program of non-ASC B cell functions, including cytokine secretion and costimulation, suggesting a link between innate and adaptive Bc responses. Transcriptome analysis suggested a gene regulatory network for CD27(lo) and CD27(hi) Bc differentiation.

20.
PLoS One ; 6(9): e24650, 2011.
Article in English | MEDLINE | ID: mdl-21949739

ABSTRACT

Muscle wasting that occurs with cancer cachexia is caused by an imbalance in the rates of muscle protein synthesis and degradation. The Apc(Min/+) mouse is a model of colorectal cancer that develops cachexia that is dependent on circulating IL-6. However, the IL-6 regulation of muscle protein turnover during the initiation and progression of cachexia in the Apc(Min/+) mouse is not known. Cachexia progression was studied in Apc(Min/+) mice that were either weight stable (WS) or had initial (≤5%), intermediate (6-19%), or extreme (≥20%) body weight loss. The initiation of cachexia reduced %MPS 19% and a further ∼50% with additional weight loss. Muscle IGF-1 mRNA expression and mTOR targets were suppressed with the progression of body weight loss, while muscle AMPK phosphorylation (Thr 172), AMPK activity, and raptor phosphorylation (Ser 792) were not increased with the initiation of weight loss, but were induced as cachexia progressed. ATP dependent protein degradation increased during the initiation and progression of cachexia. However, ATP independent protein degradation was not increased until cachexia had progressed beyond the initial phase. IL-6 receptor antibody administration prevented body weight loss and suppressed muscle protein degradation, without any effect on muscle %MPS or IGF-1 associated signaling. In summary, the %MPS reduction during the initiation of cachexia is associated with IGF-1/mTOR signaling repression, while muscle AMPK activation and activation of ATP independent protein degradation occur later in the progression of cachexia. IL-6 receptor antibody treatment blocked cachexia progression through the suppression of muscle protein degradation, while not rescuing the suppression of muscle protein synthesis. Attenuation of IL-6 signaling was effective in blocking the progression of cachexia, but not sufficient to reverse the process.


Subject(s)
Cachexia/complications , Cachexia/pathology , Disease Progression , Muscle Proteins/metabolism , Muscle, Skeletal/metabolism , Neoplasms/complications , Neoplasms/pathology , AMP-Activated Protein Kinases/metabolism , Adenosine Triphosphate/metabolism , Adiposity , Animals , Body Weight , Cachexia/blood , Enzyme Activation , Inflammation/complications , Inflammation/pathology , Insulin-Like Growth Factor I/metabolism , Interleukin-6/blood , Mice , Mice, Inbred C57BL , Mice, Mutant Strains , Muscle, Skeletal/enzymology , Muscle, Skeletal/pathology , Myofibrils/metabolism , Neoplasms/blood , Organ Size , Phosphorylation , Protein Biosynthesis , Proteolysis , Signal Transduction , TOR Serine-Threonine Kinases
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