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1.
BMC Infect Dis ; 21(1): 1035, 2021 Oct 04.
Article in English | MEDLINE | ID: mdl-34607555

ABSTRACT

BACKGROUND: From October 2019-March 2020, several clusters of mumps cases were identified in the Netherlands. Our objective was to describe cluster-associated mumps virus transmission using epidemiological and molecular information in order to help future mumps outbreak investigation and control efforts. METHODS: An epidemiological cluster includes ≥ 2 mumps cases with at least an epidemiological-link to a laboratory-confirmed mumps case. A molecular group includes ≥ 2 mumps cases with identical mumps virus sequences. Cases with symptom onset date between 1 October 2019 and 31 March 2020 reported through the National Notifiable Diseases Surveillance System were included. We described epidemiological and clinical characteristics of mumps cases. Sequence data was obtained from selected regions of mumps virus genomes (2270 nucleotides). Associations between epidemiological and molecular information were investigated. RESULTS: In total, 102 mumps cases were notified (90% laboratory-confirmed, 10% epidemiologically-linked). 71 out of 102 cases were identified as part of an epidemiological cluster and/or molecular group. Twenty-one (30%) of 71 cases were identified solely from epidemiological information, 25 (35%) solely from molecular surveillance, and 25 (35%) using both. Fourteen epidemiological clusters were identified containing a total of 46 (range: 2-12, median: 3) cases. Complete sequence data was obtained from 50 mumps genotype G viruses. Twelve molecular groups were identified containing 43 (range: 2-13) cases, dispersed geographically and timewise. Combined information grouped seven epidemiological clusters into two distinct molecular groups. The first lasting for 14 weeks, the other for 6. Additionally, one molecular group was detected, linked by geography and time but without an epidemiological-link. CONCLUSIONS: Combined epidemiological and molecular information indicated ongoing mumps virus transmission from multiple introductions for extended time periods. Sequence analysis provided valuable insights into epidemiological clustering. If combined information is available in a timely manner, this would improve outbreak detection, generate further insight into mumps transmission, and guide necessary control measures.


Subject(s)
Mumps virus , Mumps , Disease Outbreaks , Genotype , Humans , Mumps/epidemiology , Mumps virus/genetics , Netherlands/epidemiology , Phylogeny
2.
Transfusion ; 60(5): 940-946, 2020 05.
Article in English | MEDLINE | ID: mdl-32086954

ABSTRACT

BACKGROUND: Patients refractory for platelet transfusions benefit from human leukocyte antigen (HLA)-matched platelet transfusions. Differences in ethnic background of patients and donors could hamper the availability of sufficient numbers of HLA-matched donors for all patients. We evaluated our HLA-matched donor program and explored the role of ethnic background of patients related to the number of available donors. METHODS: We performed a cohort study among consecutive patients who received HLA-matched platelet concentrates in the Netherlands between 1994 and 2017. The number of available matched donors was determined per patient. Haplotypes were constructed from genotypes with computer software (PyPop). Based on haplotypes, HaploStats, an algorithm from the National Marrow Donor Program, was used to assess the most likely ethnic background for patients with 5 or fewer and 30 or more donors. RESULTS: HLA typing was available for 19,478 donors in September 2017. A total of 1206 patients received 12,350 HLA-matched transfusions. A median of 83 (interquartile range, 18-266) donors were available per patient. For 95 (10.3%) patients, 5 or fewer donors were available. These patients were more likely to have an African American background, whereas patients with 30 or more donors were more often from Caucasian origin, compared with Caucasian origin for patients with 30 donors. CONCLUSION: Adequate transfusion support could be guaranteed for most but not all refractory patients. More non-Caucasian donors are required to ensure the availability of HLA-matched donors for all patients in the Netherlands.


Subject(s)
Blood Donors/supply & distribution , Ethnicity , Hematologic Neoplasms/therapy , Histocompatibility Testing/standards , Platelet Transfusion/standards , Adolescent , Adult , Blood Donors/statistics & numerical data , Cohort Studies , Donor Selection/standards , Ethnicity/statistics & numerical data , Female , Gene Frequency , HLA Antigens/blood , HLA Antigens/immunology , Haplotypes , Hematologic Neoplasms/blood , Hematologic Neoplasms/ethnology , Histocompatibility Testing/methods , Histocompatibility Testing/statistics & numerical data , Humans , Male , Netherlands/epidemiology , Platelet Transfusion/methods , Platelet Transfusion/statistics & numerical data , Registries , Young Adult
3.
Transfusion ; 59(11): 3303-3307, 2019 11.
Article in English | MEDLINE | ID: mdl-31602653

ABSTRACT

BACKGROUND: Recipients of platelet transfusions with 1-hour corrected count increments (1hCCIs) of 7.5 or less on two subsequent platelet transfusions with random platelets may benefit from human leukocyte antigen (HLA)-matched platelet concentrates. We aimed to quantify the efficacy of HLA-matched platelets concentrates expressed in 1hCCIs. METHODS: We performed a cohort study among consecutive refractory patients who received HLA-matched platelet concentrates in the Netherlands between 1994 and 2017. We performed mixed-model linear regression comparing 1hCCIs after HLA split-antigen-matched transfusions with 1hCCIs after HLA-mismatched transfusions, adjusted for within-patient correlations. A donor-to-patient match was categorized as a split-match if all donor HLA-A and -B antigens were present in the patient as well; that is, donor and patient were HLA identical or compatible. Subgroup analyses were performed for patients with positive or negative HLA antibody screens. Finally, the additional effect of ABO mismatches on 1hCCIs was investigated. RESULTS: The 1hCCI after an HLA-matched transfusion was 14.09 (95% reference interval, 1.13-29.89). This was 1.94 (95% confidence interval [CI], 0.74-3.15) higher than 1hCCI after HLA-mismatched transfusions. In patients with negative HLA antibody screening tests, HLA matching did not affect 1hCCIs. Conditional on HLA matching, 1hCCIs decreased by 3.70 (95% CI, -5.22 to -2.18) with major ABO mismatches. CONCLUSION: Matched platelet concentrates yielded maximal 1hCCIs, whereas mismatched transfusions still resulted in adequate increments. There is no indication for HLA-matched platelets in patients with negative antibody screens.


Subject(s)
HLA Antigens/immunology , Histocompatibility Testing , Isoantibodies/blood , Platelet Transfusion , Adult , Aged , Blood Donors , Cohort Studies , Female , Humans , Linear Models , Male , Middle Aged , Platelet Count
4.
Cephalalgia ; 35(9): 741-7, 2015 Aug.
Article in English | MEDLINE | ID: mdl-25398231

ABSTRACT

BACKGROUND: Cluster headache is a severe neurological disorder with a complex genetic background. A missense single nucleotide polymorphism (rs2653349; p.Ile308Val) in the HCRTR2 gene that encodes the hypocretin receptor 2 is the only genetic factor that is reported to be associated with cluster headache in different studies. However, as there are conflicting results between studies, we re-evaluated its role in cluster headache. METHODS: We performed a genetic association analysis for rs2653349 in our large Leiden University Cluster headache Analysis (LUCA) program study population. Systematic selection of the literature yielded three additional studies comprising five study populations, which were included in our meta-analysis. Data were extracted according to predefined criteria. RESULTS: A total of 575 cluster headache patients from our LUCA study and 874 controls were genotyped for HCRTR2 SNP rs2653349 but no significant association with cluster headache was found (odds ratio 0.91 (95% confidence intervals 0.75-1.10), p = 0.319). In contrast, the meta-analysis that included in total 1167 cluster headache cases and 1618 controls from the six study populations, which were part of four different studies, showed association of the single nucleotide polymorphism with cluster headache (random effect odds ratio 0.69 (95% confidence intervals 0.53-0.90), p = 0.006). The association became weaker, as the odds ratio increased to 0.80, when the meta-analysis was repeated without the initial single South European study with the largest effect size. CONCLUSIONS: Although we did not find evidence for association of rs2653349 in our LUCA study, which is the largest investigated study population thus far, our meta-analysis provides genetic evidence for a role of HCRTR2 in cluster headache. Regardless, we feel that the association should be interpreted with caution as meta-analyses with individual populations that have limited power have diminished validity.


Subject(s)
Cluster Headache/genetics , Genetic Predisposition to Disease/genetics , Orexin Receptors/genetics , Female , Genetic Association Studies , Genotype , Humans , Male , Polymorphism, Single Nucleotide
5.
Cephalalgia ; 35(1): 10-5, 2015 Jan.
Article in English | MEDLINE | ID: mdl-24824604

ABSTRACT

BACKGROUND: Hemiplegic migraine (HM) and alternating hemiplegia of childhood (AHC) are rare episodic neurological brain disorders with partial clinical and genetic overlap. Recently, ATP1A3 mutations were shown to account for the majority of AHC patients. In addition, a mutation in the SLC2A1 gene was reported in a patient with atypical AHC. We therefore investigated whether mutations in these genes may also be involved in HM. Furthermore, we studied the role of SLC2A1 mutations in a small set of AHC patients without ATP1A3 mutations. METHODS: We screened 42 HM patients (21 familial and 21 sporadic patients) for ATP1A3 and SLC2A1 mutations. In addition, four typical AHC patients and one atypical patient with overlapping symptoms of both disorders were screened for SLC2A1 mutations. RESULTS: A pathogenic de novo SLC2A1 mutation (p.Gly18Arg) was found in the atypical patient with overlapping symptoms of AHC and hemiplegic migraine. No mutations were found in the HM and the other AHC patients. CONCLUSION: Screening for a mutation in the SLC2A1 gene should be considered in patients with a complex phenotype with overlapping symptoms of hemiplegic migraine and AHC.


Subject(s)
Glucose Transporter Type 1/genetics , Hemiplegia/genetics , Migraine with Aura/genetics , Adolescent , Adult , Age of Onset , Child , DNA Mutational Analysis , Female , Humans , Multiplex Polymerase Chain Reaction , Mutation , Young Adult
6.
Am Heart J ; 168(1): 45-52.e7, 2014 Jul.
Article in English | MEDLINE | ID: mdl-24952859

ABSTRACT

BACKGROUND: Metabolomics, defined as the comprehensive identification and quantification of low-molecular-weight metabolites to be found in a biological sample, has been put forward as a potential tool for classifying individuals according to their risk of coronary heart disease (CHD). Here, we investigated whether a single-point blood measurement of the metabolome is associated with and predictive for the risk of CHD. METHODS AND RESULTS: We obtained proton nuclear magnetic resonance spectra in 79 cases who developed CHD during follow-up (median 8.1 years) and in 565 randomly selected individuals. In these spectra, 100 signals representing 36 metabolites were identified. Applying least absolute shrinkage and selection operator regression, we defined a weighted metabolite score consisting of 13 proton nuclear magnetic resonance signals that optimally predicted CHD. This metabolite score, including signals representing a lipid fraction, glucose, valine, ornithine, glutamate, creatinine, glycoproteins, citrate, and 1.5-anhydrosorbitol, was associated with the incidence of CHD independent of traditional risk factors (TRFs) (hazard ratio 1.50, 95% CI 1.12-2.01). Predictive performance of this metabolite score on its own was moderate (C-index 0.75, 95% CI 0.70-0.80), but after adding age and sex, the C-index was only modestly lower than that of TRFs (C-index 0.81, 95% CI 0.77-0.85 and C-index 0.82, 95% CI 0.78-0.87, respectively). The metabolite score was also associated with prevalent CHD independent of TRFs (odds ratio 1.59, 95% CI 1.19-2.13). CONCLUSION: A metabolite score derived from a single-point metabolome measurement is associated with CHD, and metabolomics may be a promising tool for refining and improving the prediction of CHD.


Subject(s)
Coronary Disease/blood , Coronary Disease/epidemiology , Lipids/blood , Magnetic Resonance Spectroscopy/methods , Metabolomics/methods , Adult , Female , Follow-Up Studies , Humans , Incidence , Male , Middle Aged , Netherlands/epidemiology , Odds Ratio , Predictive Value of Tests , Prognosis , Prospective Studies , Risk Factors , Time Factors , Young Adult
7.
Cephalalgia ; 34(13): 1062-9, 2014 Nov.
Article in English | MEDLINE | ID: mdl-24707016

ABSTRACT

BACKGROUND: Familial hemiplegic migraine (FHM) is a rare monogenic subtype of migraine with aura, characterized by motor auras. The majority of FHM families have mutations in the CACNA1A and ATP1A2 genes; less than 5% of FHM families are explained by mutations in the SCN1A gene. Here we screened two Spanish FHM families for mutations in the FHM genes. METHODS: We assessed the clinical features of both FHM families and performed direct sequencing of all coding exons (and adjacent sequences) of the CACNA1A, ATP1A2, PRRT2 and SCN1A genes. RESULTS: FHM patients in both families had pure hemiplegic migraine with highly variable severity and frequency of attacks. We identified a novel SCN1A missense mutation p.Ile1498Met in all three tested hemiplegic migraine patients of one family. In the other family, novel SCN1A missense mutation p.Phe1661Leu was identified in six out of eight tested hemiplegic migraine patients. Both mutations affect amino acid residues that either reside in an important functional domain (in the case of Ile(1498)) or are known to be important for kinetic properties of the NaV1.1 channel (in the case of Phe(1661)). CONCLUSIONS: We identified two mutations in families with FHM. SCN1A mutations are an infrequent but important cause of FHM. Genetic testing is indicated in families when no mutations are found in other FHM genes.


Subject(s)
Migraine with Aura/genetics , Mutation , NAV1.1 Voltage-Gated Sodium Channel/genetics , Adolescent , Adult , Age of Onset , Aged , Amino Acid Sequence , Child , DNA Mutational Analysis , Female , Humans , Male , Middle Aged , Molecular Sequence Data , Pedigree , Young Adult
8.
Headache ; 53(8): 1334-40, 2013 Sep.
Article in English | MEDLINE | ID: mdl-23808839

ABSTRACT

OBJECTIVE: To determine the prevalence and nature of trigeminal neuralgia in a large group of cluster headache patients. BACKGROUND: Cluster-tic syndrome is a rare headache syndrome in which trigeminal neuralgia and cluster headache co-occur. The existence of cluster-tic syndrome as a separate entity is questioned, and figures on prevalence of simultaneous existence of cluster headache and trigeminal neuralgia are not available. METHODS: As part of a nationwide study on headache mechanisms in cluster headache (Leiden University Medical Centre Cluster headache Neuro Analysis programme), we collected clinical data of 244 cluster headache patients using a semistructured telephone interview in a cross-sectional design. RESULTS: In 11 (4.5%) cluster headache patients, attacks fulfilling International Headache Society criteria for trigeminal neuralgia were also present. In all cases, trigeminal neuralgia occurred ipsilateral to cluster headache and in the majority (82%) in the ophthalmic branch. In 8 of these 11 patients (73%), the frequency and time pattern of trigeminal neuralgia seemed to parallel cluster headache and was likely a part of the cluster headache spectrum. In the 3 remaining patients, cluster headache and trigeminal neuralgia were unrelated in time and appeared to occur independently. CONCLUSION: Trigeminal neuralgia co-occurred in 11/244 (4.5%) of cluster headache patients. In only 3 (1.2%) patients, trigeminal neuralgia seemed to occur independently from cluster headache episodes. Trigeminal neuralgia (-like) attacks in cluster headache patients are most of the time part of the cluster headache spectrum and should then probably not be treated separately. A shared underlying pathophysiological mechanism of cluster headache and trigeminal neuralgia is not supported by this study.


Subject(s)
Cluster Headache/diagnosis , Cluster Headache/epidemiology , Tics/diagnosis , Tics/epidemiology , Trigeminal Neuralgia/diagnosis , Trigeminal Neuralgia/epidemiology , Adult , Aged , Aged, 80 and over , Cross-Sectional Studies , Female , Follow-Up Studies , Humans , Male , Middle Aged , Netherlands/epidemiology
9.
Nat Genet ; 45(8): 912-917, 2013 Aug.
Article in English | MEDLINE | ID: mdl-23793025

ABSTRACT

Migraine is the most common brain disorder, affecting approximately 14% of the adult population, but its molecular mechanisms are poorly understood. We report the results of a meta-analysis across 29 genome-wide association studies, including a total of 23,285 individuals with migraine (cases) and 95,425 population-matched controls. We identified 12 loci associated with migraine susceptibility (P<5×10(-8)). Five loci are new: near AJAP1 at 1p36, near TSPAN2 at 1p13, within FHL5 at 6q16, within C7orf10 at 7p14 and near MMP16 at 8q21. Three of these loci were identified in disease subgroup analyses. Brain tissue expression quantitative trait locus analysis suggests potential functional candidate genes at four loci: APOA1BP, TBC1D7, FUT9, STAT6 and ATP5B.


Subject(s)
Genetic Loci , Genetic Predisposition to Disease , Genome-Wide Association Study , Migraine Disorders/genetics , Cerebellum/metabolism , Computational Biology , Frontal Lobe/metabolism , Humans , Polymorphism, Single Nucleotide , Quantitative Trait Loci
10.
Cephalalgia ; 33(11): 924-31, 2013 Aug.
Article in English | MEDLINE | ID: mdl-23624341

ABSTRACT

BACKGROUND: Cluster headache (CH) is a primary headache disorder that is diagnosed based on the patient's history. For large-scale epidemiologic and genetic studies, a web-based, preferably short, questionnaire can be a feasible alternative to replace time-consuming clinical interviews. METHODS: Self-reported CH patients were enrolled via our research website. Participants meeting screening criteria were directed to the Leiden University Cluster headache Analysis program (LUCA) questionnaire. Individual diagnoses were calculated using an algorithm based on International Headache Society criteria. Subsequently, semi-structured telephone interviews were carried out to validate the LUCA questionnaire. The shorter Quick Ascertainment of Cluster Headache (QATCH) questionnaire for diagnosing CH was constructed by using logistic regression to select the most predictive questions. RESULTS: Via our website 437 self-reported CH patients were recruited. Of these, 291 patients were included in this cross-sectional study. The LUCA questionnaire was valid and accurate. Using logistic regression, three questions (QATCH) provided similar sensitivity (53.8% vs. 57.2%), specificity (88.9% vs. 87.5%), positive predictive value (95.5% vs. 95.9%) and negative predictive value (30.8% vs. 28.8%) compared with the LUCA questionnaire. CONCLUSION: The web-based LUCA questionnaire was accurate and reliable in diagnosing CH among self-reported patients. Males with headache attacks of short duration and long headache-free intervals (months to years) are very likely to have CH.


Subject(s)
Cluster Headache/diagnosis , Surveys and Questionnaires , Adult , Cross-Sectional Studies , Female , Humans , Internet , Logistic Models , Male , Middle Aged , Sensitivity and Specificity
11.
Nat Genet ; 45(5): 546-51, 2013 May.
Article in English | MEDLINE | ID: mdl-23542697

ABSTRACT

The majority of epilepsies are focal in origin, with seizures emanating from one brain region. Although focal epilepsies often arise from structural brain lesions, many affected individuals have normal brain imaging. The etiology is unknown in the majority of individuals, although genetic factors are increasingly recognized. Autosomal dominant familial focal epilepsy with variable foci (FFEVF) is notable because family members have seizures originating from different cortical regions. Using exome sequencing, we detected DEPDC5 mutations in two affected families. We subsequently identified mutations in five of six additional published large families with FFEVF. Study of families with focal epilepsy that were too small for conventional clinical diagnosis with FFEVF identified DEPDC5 mutations in approximately 12% of families (10/82). This high frequency establishes DEPDC5 mutations as a common cause of familial focal epilepsies. Shared homology with G protein signaling molecules and localization in human neurons suggest a role of DEPDC5 in neuronal signal transduction.


Subject(s)
Epilepsies, Partial/genetics , Exome/genetics , Genetic Predisposition to Disease/genetics , Guanine Nucleotide Exchange Factors/genetics , Mutation/genetics , Repressor Proteins/genetics , Adolescent , Adult , Animals , Case-Control Studies , Cells, Cultured , Child , Child, Preschool , Cohort Studies , Computational Biology , Epilepsies, Partial/diagnosis , Female , Fluorescent Antibody Technique , GTPase-Activating Proteins , Genetic Linkage , Genotype , Humans , Infant , Male , Mice , Middle Aged , Neurons/cytology , Neurons/metabolism , Pedigree , Pluripotent Stem Cells/cytology , Pluripotent Stem Cells/metabolism , Young Adult
12.
Ned Tijdschr Geneeskd ; 157(1): A5306, 2013.
Article in Dutch | MEDLINE | ID: mdl-23298724

ABSTRACT

OBJECTIVE: To describe the prevalence of aura in a Dutch cluster headache (CH) population. DESIGN: Cross-sectional, epidemiological study. METHOD: As part of a large-scale study into headaches conducted in Leiden (the Netherlands), patients experiencing headaches were identified by means of questionnaires on a headache website. One group of patients with CH was approached by telephone and an interview on aura-related symptoms was performed by means of a standardized questionnaire. The presence of migraine co-morbidity was also investigated. RESULTS: Of the interviewed CH patients, 22 out of 244 (9.0%) had aura-related symptoms preceding a CH attack, which were predominantly visual in nature. The majority (72.7%) of these patients did not have migraine co-morbidity. CONCLUSION: Aura-related symptoms can occur in CH without migraine co-morbidity. In clinical practice, it should be taken into account that the presence of an aura does not always indicate migraine.


Subject(s)
Cluster Headache/epidemiology , Hallucinations/epidemiology , Migraine with Aura/epidemiology , Migraine without Aura/epidemiology , Comorbidity , Cross-Sectional Studies , Epilepsy , Humans , Prevalence , Surveys and Questionnaires
13.
Eur J Hum Genet ; 21(6): 637-42, 2013 Jun.
Article in English | MEDLINE | ID: mdl-23092955

ABSTRACT

Heterozygous mutations in dynamin 2 (DNM2) have been linked to dominant Charcot-Marie-Tooth neuropathy and centronuclear myopathy. We report the first homozygous mutation in the DNM2 protein p.Phe379Val, in three consanguineous patients with a lethal congenital syndrome associating akinesia, joint contractures, hypotonia, skeletal abnormalities, and brain and retinal hemorrhages. In vitro membrane tubulation, trafficking and GTPase assays are consistent with an impact of the DNM2p.Phe379Val mutation on endocytosis. Although DNM2 has been previously implicated in axonal and muscle maintenance, the clinical manifestation in our patients taken together with our expression analysis profile during mouse embryogenesis and knockdown approaches in zebrafish resulting in defects in muscle organization and angiogenesis support a pleiotropic role for DNM2 during fetal development in vertebrates and humans.


Subject(s)
Congenital Abnormalities/genetics , Dynamin II/genetics , Homozygote , Mutation, Missense/genetics , Amino Acid Sequence , Amino Acid Substitution/genetics , Animals , Base Sequence , Conserved Sequence/genetics , DNA Mutational Analysis , Dynamin II/chemistry , Dynamin II/metabolism , Embryonic Development/genetics , Female , Gene Expression Regulation, Developmental , Heterozygote , Humans , Infant, Newborn , Male , Mice , Molecular Sequence Data , Pedigree , Pregnancy , Syndrome
14.
Cephalalgia ; 33(4): 228-35, 2013 Mar.
Article in English | MEDLINE | ID: mdl-23147163

ABSTRACT

AIM: Migraine, in particular with aura, has been associated with an increased risk for ischemic stroke and coronary heart disease. The underlying mechanism is unknown. In a cross-sectional case control study we investigated whether an enhanced risk of atherosclerosis in migraineurs explains this increased cardiovascular risk. METHODS: Subjects were participants from the population-based Erasmus Rucphen Family study. Atherosclerosis was assessed in 360 migraineurs (209 without aura and 151 with aura) and 617 subjects without migraine or severe headache. Atherosclerosis was quantified by intima media thickness, pulse wave velocity and ankle-brachial index. RESULTS: Migraineurs, especially with aura, were found more likely to smoke, have diabetes or a modestly decreased HDL-cholesterol. No differences were found for the atherosclerosis parameters. CONCLUSION: In this large population-based study, migraineurs have no increased risk of atherosclerosis. Therefore, enhanced atherosclerosis is an unlikely explanation for the increased cardiovascular risk seen in migraineurs.


Subject(s)
Atherosclerosis/complications , Atherosclerosis/epidemiology , Migraine Disorders/complications , Ankle Brachial Index , Carotid Intima-Media Thickness , Case-Control Studies , Cross-Sectional Studies , Female , Humans , Male , Middle Aged , Prevalence , Pulse Wave Analysis
15.
Neurology ; 79(21): 2154-5, 2012 Nov 20.
Article in English | MEDLINE | ID: mdl-23077019

ABSTRACT

Benign familial infantile convulsions (BFIC) is an autosomal dominantly inherited epilepsy syndrome with onset between 3 and 12 months of age. It is characterized by brief seizures with motor arrest, cyanosis, hypertonia, and limb jerks. Seizures respond well to antiepileptic drugs and remission occurs before the age of 3 years.(1) Several recent publications described heterozygous mutations in the proline-rich transmembrane protein 2 (PRRT2) gene on chromosome 16p11.2, one of the known BFIC loci,(2,3) in an increasingly large number of families with paroxysmal kinesigenic dyskinesia (PKD) and PKD with infantile convulsions (PKD/IC).(4-6) The majority of PRRT2 mutations result in a premature truncation of PRRT2 protein. Although its exact function is unknown, recent studies indicated that PRRT2 is highly expressed in the developing nervous system and localized in axons in primary neuronal cultures.(6) Through binding to synaptic protein SNAP25, PRRT2 may be involved in vesicle docking and calcium-triggered neuronal exocytosis.(6) Preliminary functional studies of truncated PRRT2 mutants showed either a loss of membrane localization in COS-7 cells(5) or near absence of mutant protein in hippocampal neuronal cultures(6) that is likely due to nonsense mediated RNA decay. One can speculate that mutant PRRT2 protein may result in abnormal neurotransmitter release and neuronal hyperexcitability that could explain the clinical symptoms seen with PKD and PKD/IC. We tested whether PRRT2 is also the causal gene in families with BFIC without associated paroxysmal dyskinesia.


Subject(s)
Epilepsy, Benign Neonatal/genetics , Membrane Proteins/genetics , Mutation/genetics , Nerve Tissue Proteins/genetics , Chorea/diagnosis , Chorea/genetics , Epilepsy, Benign Neonatal/diagnosis , Female , Humans , Infant , Male , Pedigree
16.
J Histochem Cytochem ; 59(2): 146-57, 2011 Feb.
Article in English | MEDLINE | ID: mdl-21339180

ABSTRACT

The routine workflow for invasive cancer diagnostics includes biopsy processing by formalin fixation and paraffin embedding. It has been shown only recently that this kind of sample can be used for gene expression analysis with microarrays. To support this view, the authors conducted a microarray study using formalin-fixed paraffin-embedded (FFPE) core needle biopsies from breast cancers. Typically, for the 3'-biased chip type that was used, the probe sets interrogate sequences near the poly-A-tail of the transcripts, and this kind of probe turned out to be suitable to measure RNA levels in FFPE biopsies. For ER and HER2, the authors observed strong correlations between RNA levels and protein expression (p = 0.000003 and p = 0.0022). ER and HER2 classification of the biopsies by the RNA levels was feasible with high sensitivity and specificity (AUROC = 0.93 and AUROC = 0.96). Furthermore, a signature of 346 genes was identified that correlated with ER and a signature of 528 genes that correlated with HER2 protein status. Many of these genes (ER: 63%) could be confirmed by analysis of gene expression data from frozen tissues. The findings support the notion that clinically relevant information can be gained from microarray analyses of FFPE cancer biopsies. This opens new opportunities for biomarker detection studies and the integration of microarrays into the workflow of cancer diagnostics.


Subject(s)
Biopsy, Needle/methods , Breast Neoplasms/pathology , Formaldehyde/metabolism , Gene Expression Profiling/methods , Oligonucleotide Array Sequence Analysis/methods , Paraffin Embedding/methods , Tissue Fixation/methods , Breast Neoplasms/diagnosis , Breast Neoplasms/genetics , Cluster Analysis , Estrogen Receptor alpha/genetics , Feasibility Studies , Genome, Human/genetics , Humans , Immunohistochemistry , Nucleic Acid Hybridization , Phenotype , Polymerase Chain Reaction , Principal Component Analysis , Quality Control , RNA/genetics , RNA/isolation & purification , Receptor, ErbB-2/genetics , Retrospective Studies
17.
Nat Genet ; 42(10): 869-73, 2010 Oct.
Article in English | MEDLINE | ID: mdl-20802479

ABSTRACT

Migraine is a common episodic neurological disorder, typically presenting with recurrent attacks of severe headache and autonomic dysfunction. Apart from rare monogenic subtypes, no genetic or molecular markers for migraine have been convincingly established. We identified the minor allele of rs1835740 on chromosome 8q22.1 to be associated with migraine (P = 5.38 × 10⁻9, odds ratio = 1.23, 95% CI 1.150-1.324) in a genome-wide association study of 2,731 migraine cases ascertained from three European headache clinics and 10,747 population-matched controls. The association was replicated in 3,202 cases and 40,062 controls for an overall meta-analysis P value of 1.69 × 10⁻¹¹ (odds ratio = 1.18, 95% CI 1.127-1.244). rs1835740 is located between MTDH (astrocyte elevated gene 1, also known as AEG-1) and PGCP (encoding plasma glutamate carboxypeptidase). In an expression quantitative trait study in lymphoblastoid cell lines, transcript levels of the MTDH were found to have a significant correlation to rs1835740 (P = 3.96 × 10⁻5, permuted threshold for genome-wide significance 7.7 × 10⁻5. To our knowledge, our data establish rs1835740 as the first genetic risk factor for migraine.


Subject(s)
Chromosomes, Human, Pair 8/genetics , Genetic Predisposition to Disease , Genome, Human , Genome-Wide Association Study , Microsatellite Repeats/genetics , Migraine Disorders/genetics , Antigens, Surface/genetics , Calcium-Binding Proteins/genetics , Case-Control Studies , Cell Adhesion Molecules/genetics , Cells, Cultured , Female , Genotype , Glutamate Carboxypeptidase II/genetics , Humans , Lymphocytes/metabolism , Male , Membrane Proteins , Quantitative Trait Loci , RNA-Binding Proteins
18.
Clin Cancer Res ; 10(11): 3678-88, 2004 Jun 01.
Article in English | MEDLINE | ID: mdl-15173074

ABSTRACT

PURPOSE: G3139 is an antisense bcl-2 phosphorothioate oligodeoxyribonucleotide that is currently being evaluated in Phase III clinical trials in several human cancers. The aim of the present work was to further identify the apparent non-bcl-2-dependent mechanism of this action of this compound in PC3 prostate cancer cells. EXPERIMENTAL DESIGN: We performed Affymetrix U95A oligonucleotide microarray studies on mRNA isolated from cells treated with G3139 and related oligonucleotides. RESULTS: Hierarchical clustering revealed the presence of a set of genes of which the expression was elevated on both 1 and 3 days after oligonucleotide treatment. Significantly, the persistence of expression of the up-regulation of these genes, many of which are members of the IFN cascade, was greater for G3139 than for any other oligomer evaluated. Furthermore, many of the genes with the greatest up-regulation of expression are also those of which the expression is up-regulated after treatment of cells with IFNs. Treatment of PC3 cells with either IFN-beta or -gamma recapitulated some of the aspects of the molecular and phenotypic changes observed after treatment with a G3139/Lipofectin complex. These include down-regulation of bcl-2 protein expression itself, down-regulation of protein kinase C alpha protein expression (but not that of other protein kinase C isoforms), alteration in p21/Waf1/Cip1 protein expression, up-regulation of MHC-I cell surface expression, and profound suppression of cell growth in the absence of a notable increase in cellular apoptosis. However, G3139 (when complexed with Lipofectin) did not induce the up-regulation of expression of either type I or type II IFNs, nor could IFNs be found in conditioned media from treated cells. CONCLUSIONS: Oligonucleotide microarray experiments demonstrated that G3139 could induce elements of the IFN cascade in PC3 cells in vitro. In addition, the cellular phenotype obtained after treatment with exogenous IFN could, at least in part, recapitulate that obtained after G3139 treatment. Nevertheless, the oligonucleotide microarray experiments we performed also demonstrated that there are extremely large qualitative and quantitative differences between the two treatments.


Subject(s)
Gene Expression Regulation, Neoplastic , Genetic Therapy/methods , Interferon-beta/therapeutic use , Interferon-gamma/therapeutic use , Oligonucleotides/therapeutic use , Prostatic Neoplasms/drug therapy , Prostatic Neoplasms/therapy , Algorithms , Annexin A5/chemistry , Antibodies, Monoclonal/chemistry , Blotting, Northern , Blotting, Western , Cell Line, Tumor , Cell Proliferation , Cluster Analysis , CpG Islands , Dose-Response Relationship, Drug , Down-Regulation , Flow Cytometry , Humans , Interferon-gamma/metabolism , Male , Oligonucleotide Array Sequence Analysis , Phenotype , Protein Isoforms , Protein Kinase C/biosynthesis , Protein Kinase C-alpha , Proto-Oncogene Proteins c-bcl-2/chemistry , RNA, Messenger/metabolism , Reverse Transcriptase Polymerase Chain Reaction , Time Factors , Transfection , Up-Regulation
19.
Acta gastroenterol. latinoam ; 27(5): 331-4, 1997. tab, graf
Article in Spanish | LILACS | ID: lil-205080

ABSTRACT

Objetivos: Determinar la curva de infección del HAV en niños menores de diez años. Establecer estrategias de vacunación en la Argentina. Material y Métodos: se etableció un grupo cooperativo para el rastreo serológico de niños entre los seis meses y los diez años de edad, sin sintomatología y/o cuadro clínico de hepatitis aguda, tomando como grupo inicial de trabajo a Centros de las ciudades de Bs. As., San Justo (Pcia, de Bs. As.), Trelew (Chubut), Rosario (Santa Fe) y Tucumán. Se estudiaran 3699 niños para Anti-HAV-IgG por ELISA (Oragnon y Abbott). Las variables de inclusión fueron: edad, sexo y calidad de agua. Resultados: 45.19 por ciento de las muestras fueron de San Justo, 26.15 por ciento de Rosario, 13 por ciento de Buenos Aires, 7.29 por ciento de Tucumán y 8.37 por ciento de Trelew. 1) Se observó el mayor porcentaje de positividad (porcentajePOS) en Tucuman (81.4 por ciento) seguido por San Justo (57.8 por ciento) y Rosario (44.3 por ciento). 2) En todas las ciudades los menores porcentajePOS correspondieron a menores de tres años. 3) La mayor dispersión del porcentajePOS ocurre entre los tres y seis años de edad. 4) en todo el muestreo se observó un valor creciente de porcentajePOS con pendientes similares, excepto para Trelew, donde aparece un pico a los cuatro años atribuíble a las características de la muestra. 5) El porcentajePOS global para la muestra fue de 51.56 por ciento. Conclusiones: 1) Este trabajo demuestra que nuestro país es de alta endemicidad para la infección por HAV. 2) La vacunación a corta edad sería la estrategia más adecuada para el control de la hepatitis A y la erradicación de la infección por el HAV.


Subject(s)
Female , Humans , Infant , Child, Preschool , Child , Endemic Diseases , Hepatitis A , Age Factors , Argentina , Endemic Diseases , Epidemiologic Factors , Hepatitis Antibodies , Incidence , Pilot Projects , Prevalence , Viral Hepatitis Vaccines , Water Supply
20.
Acta gastroenterol. latinoam ; 27(5): 331-4, 1997. tab, gra
Article in Spanish | BINACIS | ID: bin-20146

ABSTRACT

Objetivos: Determinar la curva de infección del HAV en niños menores de diez años. Establecer estrategias de vacunación en la Argentina. Material y Métodos: se etableció un grupo cooperativo para el rastreo serológico de niños entre los seis meses y los diez años de edad, sin sintomatología y/o cuadro clínico de hepatitis aguda, tomando como grupo inicial de trabajo a Centros de las ciudades de Bs. As., San Justo (Pcia, de Bs. As.), Trelew (Chubut), Rosario (Santa Fe) y Tucumán. Se estudiaran 3699 niños para Anti-HAV-IgG por ELISA (Oragnon y Abbott). Las variables de inclusión fueron: edad, sexo y calidad de agua. Resultados: 45.19 por ciento de las muestras fueron de San Justo, 26.15 por ciento de Rosario, 13 por ciento de Buenos Aires, 7.29 por ciento de Tucumán y 8.37 por ciento de Trelew. 1) Se observó el mayor porcentaje de positividad (porcentajePOS) en Tucuman (81.4 por ciento) seguido por San Justo (57.8 por ciento) y Rosario (44.3 por ciento). 2) En todas las ciudades los menores porcentajePOS correspondieron a menores de tres años. 3) La mayor dispersión del porcentajePOS ocurre entre los tres y seis años de edad. 4) en todo el muestreo se observó un valor creciente de porcentajePOS con pendientes similares, excepto para Trelew, donde aparece un pico a los cuatro años atribuíble a las características de la muestra. 5) El porcentajePOS global para la muestra fue de 51.56 por ciento. Conclusiones: 1) Este trabajo demuestra que nuestro país es de alta endemicidad para la infección por HAV. 2) La vacunación a corta edad sería la estrategia más adecuada para el control de la hepatitis A y la erradicación de la infección por el HAV. (AU)


Subject(s)
Female , Humans , Infant , Child, Preschool , Child , Hepatitis A/epidemiology , Endemic Diseases , Epidemiologic Factors , Prevalence , Incidence , Argentina , Water Supply , Age Factors , Endemic Diseases/prevention & control , Hepatitis Antibodies , Pilot Projects , Viral Hepatitis Vaccines
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