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1.
J Pain Symptom Manage ; 49(2): 161-72, 2015 Feb.
Article in English | MEDLINE | ID: mdl-24975432

ABSTRACT

CONTEXT: There is wide interindividual variation in response to morphine for cancer-related pain; 30% of patients do not have a good therapeutic outcome. Alternative opioids such as oxycodone are increasingly being used, and opioid switching has become common clinical practice. OBJECTIVES: To compare clinical response to oral morphine vs. oral oxycodone when used as first-line or second-line (after switching) treatment in patients with cancer-related pain. METHODS: In this prospective, open-label, randomized, controlled trial (ISRCTN65155201) with a selected crossover phase, patients with cancer-related pain were randomized to receive either oral morphine or oxycodone as first-line treatment. Dose was individually titrated until the patient reported adequate pain control. Patients who did not respond to the first-line opioid (either because of inadequate analgesia or unacceptable adverse effects) were switched to the alternative opioid. RESULTS: Two hundred patients were recruited. On intention-to-treat analysis (n = 198, morphine 98, oxycodone 100), there was no significant difference between the numbers of patients responding to morphine (61/98 = 62%) or oxycodone (67/100 = 67%) when used as a first-line opioid. Similarly, there was no significant difference in subsequent response when patients were switched to either morphine (8/12 = 67%) or oxycodone (11/21 = 52%). Per-protocol analysis demonstrated a 95% response rate when both opioids were available. There was no difference in adverse reaction scores between morphine and oxycodone either in first-line responders or nonresponders. CONCLUSION: In this population, there was no difference between analgesic response or adverse reactions to oral morphine and oxycodone when used as a first- or second-line opioid. These data provide evidence to support opioid switching to improve outcomes.


Subject(s)
Analgesics, Opioid/therapeutic use , Morphine/therapeutic use , Neoplasms/physiopathology , Oxycodone/therapeutic use , Pain/drug therapy , Pain/physiopathology , Analgesics, Opioid/adverse effects , Cross-Over Studies , Drug Substitution , Female , Humans , Male , Middle Aged , Morphine/adverse effects , Oxycodone/adverse effects , Prospective Studies , Treatment Outcome
2.
Support Care Cancer ; 16(5): 453-9, 2008 May.
Article in English | MEDLINE | ID: mdl-18197439

ABSTRACT

GOALS OF WORK: Constipation is a significant problem in patients taking morphine for cancer pain. The aims of this study were (1) to assess the magnitude of constipation in this study cohort, (2) to analyse the constipation treatment strategies and (3) to look for evidence of inter-individual variation in both susceptibility to constipation and response to treatment with laxatives in this patient group. MATERIALS AND METHODS: This was an observational study carried out in a tertiary referral cancer hospital. Two hundred seventy four patients were recruited to the study. All had a diagnosis of cancer and were on oral morphine for cancer pain. The main outcomes measured were subjective patient assessment of constipation severity in the preceding week and laxative use. Patients were asked to grade constipation in the preceding week on a four-point categorical scale: "not at all" (grade 0), "a little" (grade 1), "quite a bit" (grade 2) and "very much" (grade 3). Laxative dose groups (LDGs) were developed to assess laxative dosing. RESULTS: Constipation affects 72% of this cohort of patients. Constipation in this population is poorly managed. Eighty nine percent of constipated patients were on inadequate laxative therapy. Inter-individual variation in constipation on morphine exists: some patients do not experience constipation and do not need to take any laxatives, some patients do not experience constipation because they are taking laxatives and some patients experience constipation despite being on high dose laxatives. These three groups were compared in terms of cancer diagnosis, time on morphine, dose of morphine and other concomitant factors. No factor was identified to account for this inter-individual variation. Improvement in the clinical management of constipation is needed, with titration of laxatives according to individual patient need. CONCLUSION: Constipation affects a large proportion of cancer patients taking oral morphine. Constipation in these patients is generally inadequately treated.


Subject(s)
Analgesics, Opioid/adverse effects , Constipation/chemically induced , Constipation/drug therapy , Laxatives/therapeutic use , Morphine/adverse effects , Analgesics, Opioid/therapeutic use , Cohort Studies , Dose-Response Relationship, Drug , Female , Humans , Male , Morphine/therapeutic use , Neoplasms/complications , Neoplasms/drug therapy , Pain/drug therapy , Pain/etiology , Palliative Care , Treatment Outcome
3.
J Clin Virol ; 41(2): 92-5, 2008 Feb.
Article in English | MEDLINE | ID: mdl-18032098

ABSTRACT

BACKGROUND: Cytomegalovirus infection in renal transplant recipients is a major clinical problem, with both short and long term sequelae. Infection can occur as a result of reactivation of latent virus or new infection from donor tissues. The impact of donor and recipient serostatus on viremia is well recognised, with seronegative recipients at greatest risk after transplantation of an organ from a seropositive donor. However, the impact of grafting such organs into seropositive recipients is less clear. OBJECTIVES: To assess the impact of recipient serostatus on the risk of CMV antigenemia in a large renal transplant cohort. STUDY DESIGN: We prospectively quantified CMV antigenemia over time in a cohort of 486 recipients. We analysed the antigenemia status according to donor and recipient serostatus. RESULTS: Antigenemia was most common in seronegative recipients of organs from seropositive donors (D+/R-). Nevertheless, we observed that even in CMV seropositive recipients, the impact of donor serostatus on CMV antigenemia is still substantial (p=0.006; OR=2.2). CONCLUSIONS: In this large study, donor serostatus clearly plays a significant role in determining CMV risk, even in seropositive recipients.


Subject(s)
Antibodies, Viral/blood , Cytomegalovirus Infections/virology , Cytomegalovirus/immunology , Kidney Transplantation/adverse effects , Phosphoproteins/blood , Tissue Donors , Viral Matrix Proteins/blood , Cytomegalovirus/isolation & purification , Cytomegalovirus Infections/epidemiology , Cytomegalovirus Infections/immunology , Humans , Virus Activation
4.
Arthritis Rheum ; 54(9): 3034-42, 2006 Sep.
Article in English | MEDLINE | ID: mdl-16947775

ABSTRACT

OBJECTIVE: To evaluate the distribution of polymorphisms in the endothelin 1 (EDN1), endothelin receptor A (EDNRA) and endothelin receptor B (EDNRB) genes in systemic sclerosis (SSc; scleroderma) and SSc subsets. METHODS: Two hundred five patients with SSc and 255 healthy controls were screened for polymorphisms in EDN1, EDNRA, and EDNRB, using sequence-specific primer-polymerase chain reaction. The polymorphisms studied were at the following positions: for EDN1, -1370 (T-1370G) of the promoter, +138 of exon 1 (+138 A/-), +85 of exon 3 (E106E), and +23 of exon 5 (K198N); for EDNRA, -231 of exon 1 (G-231A), and +69(H323H) and +105 (E335E) of exon 6; for EDNRB, +2841 of exon 2 (EDNRB-3), -2547 of exon 3 (EDNRB-2), and -2446 of exon 3 (EDNRB-1). RESULTS: No significant differences between the SSc group as a whole and control subjects were observed for any of the investigated polymorphisms in EDN1, EDNRA, and EDNRB. However, compared with patients with limited cutaneous SSc, patients with diffuse skin involvement had an increased frequency of allele carriage of EDNRB-1A (76.8% versus 54.4%; P = 0.002), EDNRB-2A (79.7% versus 60.2%; P = 0.006), and EDNRB-3G (79.7% versus 56.6%; P = 0.001). Significantly increased carriage frequencies for EDNRA alleles H323H/C and E335E/A were observed in SSc patients with anti-RNA polymerase (anti-RNAP) antibodies, compared with both anti-RNAP-negative SSc patients (P < 0.05) and control subjects (P < 0.005). CONCLUSION: The finding of associations between endothelin receptors A and B and distinct clinical and immunologic SSc subsets supports the role of endothelin and its receptors in the pathogenesis of SSc. However, these findings and their functional significance need to be confirmed and investigated in future studies.


Subject(s)
Endothelins/genetics , Polymorphism, Genetic , Polymorphism, Single Nucleotide , Receptor, Endothelin A/genetics , Receptor, Endothelin B/genetics , Scleroderma, Systemic/genetics , Exons , Humans , Polymerase Chain Reaction/methods , Promoter Regions, Genetic , Reference Values , Skin/pathology
5.
Oncologist ; 11(7): 765-73, 2006.
Article in English | MEDLINE | ID: mdl-16880235

ABSTRACT

Pain is one of the most common and often most feared symptoms in patients with cancer. Ongoing or progressive pain is physically debilitating and has a marked impact on quality of life. Since a third of the population will die from cancer, and of these, 80% will experience severe pain in their final year of life, effective treatment of cancer-related pain remains both a high priority and an ongoing challenge in clinical practice. Individuals with moderate to severe cancer-related pain require treatment with strong analgesics, namely opioids. There is evidence to support the therapeutic maneuver of opioid switching in clinical practice, but further evidence is needed to elucidate the underlying mechanisms for interindividual differences in response to different opioids. Large, robust clinical trials will be needed if clinical differences among side-effect profiles of different opioids are to be clearly demonstrated. This review discusses candidate genes, which contribute to opioid response; many other genes have also been implicated in "pain" from animal or human studies. In order to continue to evaluate the genetic contributions to both pain susceptibility and analgesic response, further candidate genes need to be considered. Good pain control remains a high priority for clinicians and patients, and there is much work to be done to further individualize analgesic therapy for patients with cancer.


Subject(s)
Analgesics, Opioid/pharmacology , Anti-Inflammatory Agents, Non-Steroidal/therapeutic use , Neoplasms/drug therapy , Pain/drug therapy , Clinical Trials as Topic , Humans , Pain/etiology , Quality of Life
6.
Support Care Cancer ; 14(1): 56-64, 2006 Jan.
Article in English | MEDLINE | ID: mdl-15952009

ABSTRACT

GOALS OF WORK: The aims of this study were (1) to prospectively evaluate the clinical benefits of switching from morphine to an alternative opioid, using oxycodone as first-line alternative opioid, in patients with cancer, (2) to evaluate the consistency of the clinical decision for the need to switch by comparing two hospital sites, and (3) to evaluate whether there were objective predictors that would help identify morphine non-responders who require switching to an alternative opioid and from this to construct a clinical model to predict the need to switch. PATIENTS AND METHODS: One hundred eighty-six palliative care patients were prospectively recruited from two hospital sites. Responders were patients treated with morphine for more than 4 weeks with good analgesia and minimal side effects. Non-responders (switchers) were patients who had either uncontrolled pain or unacceptable side effects on morphine and therefore required an alternative opioid. The differentiation between responders and switchers was made clinically and later confirmed by objective parameters. RESULTS: In this prospective study 74% (138/186) had a good response to morphine (responders). One patient was lost to follow up. Twenty-five percent (47/186) did not respond to morphine. These non-responders were switched to alternative opioids (switchers). Furthermore, of 186 patients, 37 achieved a successful outcome when switched to oxycodone and an additional 4 were well controlled when switched to more than one alternative opioid. Overall successful pain control with minimal side effects was achieved in 96% (179/186) of patients. There were no significant differences in the need to switch between the two hospital sites. CONCLUSIONS: This study has shown that proactive clinical identification and management of patients that require opioid switching is reproducible in different clinical settings and significantly improves pain control. Further studies are required to develop and test the predictive model.


Subject(s)
Analgesics, Opioid/therapeutic use , Morphine/therapeutic use , Neoplasms/complications , Pain/drug therapy , Adult , Aged , Analgesia, Patient-Controlled , Analgesics, Opioid/adverse effects , Analysis of Variance , Decision Making , Female , Follow-Up Studies , Humans , Male , Middle Aged , Morphine/adverse effects , Oxycodone/therapeutic use , Pain/etiology , Pain Measurement , Predictive Value of Tests , Prospective Studies , Treatment Outcome
7.
Sarcoidosis Vasc Diffuse Lung Dis ; 22(1): 51-7, 2005 Mar.
Article in English | MEDLINE | ID: mdl-15881280

ABSTRACT

BACKGROUND AND AIM: KL-6 and SP-D are potential serum markers in interstitial lung diseases. Their discriminative value, and ability to reflect pulmonary disease activity and prognosis in bird fancier's lung were analyzed. METHODS: We studied 49 patients, 38 unexposed and 9 exposed controls. Serum KL-6 and SP-D concentrations were measured at presentation and a second sample, taken after antigen avoidance, was available in 17 patients. Pulmonary function tests were analyzed at presentation and 2-year follow-up. RESULTS: KL-6 and SP-D were significantly elevated in patients compared to controls (p < 0.0001). ROC curve analysis revealed that both are equally useful in discriminating patients from controls. Analysis of their value as activity markers showed that both correlated with pulmonary function impairment; however, KL-6 correlated best with diffusing capacity. Evaluation of their predictive value showed that higher levels at onset were associated with improvement of diffusing capacity during follow-up. Further, it was noted that KL-6 and SP-D levels decreased after more than one month of allergen avoidance. CONCLUSIONS: KL-6 and SP-D appear useful serum markers in bird fancier's lung. Since higher levels are associated with more severe lung function impairment at presentation, and better recovery over time, we postulate that in this disease they are especially markers of disease activity.


Subject(s)
Antigens/blood , Bird Fancier's Lung/immunology , Bird Fancier's Lung/pathology , Glycoproteins/blood , Pulmonary Surfactant-Associated Protein D/blood , Antigens, Neoplasm , Bird Fancier's Lung/diagnosis , Case-Control Studies , Diagnosis, Differential , Disease Progression , Female , Humans , Male , Middle Aged , Mucin-1 , Mucins , Predictive Value of Tests , Prognosis
8.
Transpl Int ; 17(9): 531-9, 2004 Oct.
Article in English | MEDLINE | ID: mdl-15349717

ABSTRACT

Azathioprine metabolism is influenced by activity of the enzyme thiopurine S-methyltransferase (TPMT), which varies markedly between individuals. In this study we examined the influence of TPMT gene polymorphisms on azathioprine dose 1 year after renal transplantation. TPMT coding and promoter genotypes were determined using PCR-based assays. Azathioprine dose, white cell count, and intercurrent events throughout the first year after renal transplantation were ascertained from contemporaneous clinical notes. All patients analysed ( n=172) received an initial azathioprine dose of 1.5 mg/kg per day. Twelve individuals with one variant TPMT coding allele were detected (*3A n=11, *3C n=1). Of these, 58% required azathioprine dose reduction because of leucopenia, compared to only 30% of homozygous wild-type patients ( P=0.04). A significant correlation between the presence of >/=11 variable number tandem repeats (VNTRs) in the TPMT promoter and reduction in azathioprine dose was also identified ( P=0.001). We concluded that when azathioprine is administered at an initial dose of 1.5 mg/kg per day, both coding and promoter TPMT polymorphisms influence the dose tolerated.


Subject(s)
Azathioprine/administration & dosage , Immunosuppressive Agents/administration & dosage , Kidney Transplantation , Methyltransferases/genetics , Polymorphism, Genetic , Azathioprine/adverse effects , Azathioprine/therapeutic use , Dose-Response Relationship, Drug , Gene Frequency , Genotype , Humans , Immunosuppressive Agents/adverse effects , Immunosuppressive Agents/therapeutic use , Leukopenia/chemically induced , Promoter Regions, Genetic , Retrospective Studies , Tandem Repeat Sequences , Time Factors
9.
Am J Respir Crit Care Med ; 170(11): 1185-7, 2004 Dec 01.
Article in English | MEDLINE | ID: mdl-15297273

ABSTRACT

CC10 (CC16, uteroglobin) is a pulmonary protein postulated to play a counter regulatory role in sarcoidosis pathogenesis. The adenine38guanine (A38G) polymorphism of the encoding CC10 gene (SCGB1A1) is functional. Recently, an association between the low CC10 producing 38A allele and sarcoidosis susceptibility has been reported in Japanese patients from Hokkaido. The aim of the present study was to confirm this association in a clinically well characterized population of Dutch white and Kyoto Japanese patients with sarcoidosis and control subjects. No difference in genotype or allele frequency was found between patients with sarcoidosis and control subjects in either ethnic population. Remarkably, however, a significant difference was found between the control subjects from Kyoto and Hokkaido, but not between the Japanese groups of patients with sarcoidosis. Furthermore, review of previously published A38G genotyping results showed a consistent difference in CC10 A38G allele frequencies between whites and Japanese subjects. We conclude that the CC10 A38G polymorphism does not influence sarcoidosis susceptibility in Dutch whites or in Japanese subjects from Kyoto. This stresses the importance of studying the influence of polymorphisms on disease susceptibility in multiple ethnically and geographically distinct disease and control populations before reaching conclusions.


Subject(s)
Sarcoidosis/ethnology , Sarcoidosis/genetics , Uteroglobin/genetics , Adult , Asian People/genetics , Female , Gene Frequency , Genetic Predisposition to Disease , Humans , Japan , Male , Middle Aged , Netherlands , Polymorphism, Genetic , White People/genetics
10.
Free Radic Biol Med ; 36(11): 1403-7, 2004 Jun 01.
Article in English | MEDLINE | ID: mdl-15135176

ABSTRACT

We performed a case-control study of polymorphisms of glutathione S-transferase (GST) isoenzymes and manganese superoxide dismutase (MnSOD) in black South Africans with systemic sclerosis (SSc). The frequency of the GSTM1*B phenotype was significantly decreased in the overall SSc group compared with controls (OR=0.19, p(corr)<.05), implying a possible protective effect against development of the disease. There was also a trend toward increased MnSODAla allele and phenotype frequencies in the diffuse cutaneous SSc subset compared with controls (OR=2.11 and 3.15, respectively, p(corr)<.1). Our findings provide new data on the distribution of GST and MnSOD polymorphisms in healthy Africans and further evidence that genetic factors may have a contributory role to play in predisposing to oxidative stress in SSc.


Subject(s)
Free Radical Scavengers/metabolism , Glutathione Transferase/genetics , Oxygen/metabolism , Polymorphism, Genetic , Scleroderma, Systemic/enzymology , Superoxide Dismutase/genetics , Alleles , Case-Control Studies , Female , Humans , Male , Phenotype
11.
J Immunol ; 171(12): 6910-8, 2003 Dec 15.
Article in English | MEDLINE | ID: mdl-14662898

ABSTRACT

A glutamic acid at residue 69(Glu(69)) in the HLA-DPB1 gene (Glu(69)) is associated with chronic beryllium disease (CBD) and possibly beryllium sensitization (BeS). This study tested the hypothesis that MHC class II polymorphisms are important in susceptibility to BeS and CBD and that the Glu(69) variant is related to markers of disease severity. Genomic DNA was obtained from BeS (n = 50), CBD (n = 104), and beryllium-exposed nondiseased (Be-nondiseased) (n = 125) subjects. HLA-DPB1, -DRB1, and -DQB1 genotypes were determined by (sequence-specific primers) PCR. Disease severity was assessed by pulmonary function and exercise testing. A higher frequency of the DPB1 Glu(69) gene was found in CBD and BeS compared with the Be-nondiseased subjects, with odds ratios of 10.1 for CBD vs Be-nondiseased and 9.5 for BeS vs Be-nondiseased. The majority of BeS and CBD subjects displayed non-0201 Glu(69) alleles. Glu(69) homozygosity was higher in the CBD subjects, while BeS subjects were intermediate and Be-nondiseased lowest. DRB1*01 and DQB1*05 phenotypes were reduced in CBD vs Be-nondiseased subjects, while DRB1*13 and DQB1*06 were associated with CBD in the absence of Glu(69). Markers of disease severity, including a lower forced vital capacity, diffusion capacity for carbon monoxide, PaO(2) at rest, maximum workload on exercise testing, and a higher arterial-alveolar gradient at rest, were associated with Glu(69) homozygosity. We conclude that DPB1 Glu69 is a marker of sensitization and not specific for disease. Glu(69) homozygosity acts as a functional marker associated with markers of CBD severity.


Subject(s)
Berylliosis/genetics , Berylliosis/immunology , Beryllium/immunology , Genetic Predisposition to Disease , HLA Antigens/genetics , Histocompatibility Antigens Class II/genetics , Immunization , Adult , Aged , Berylliosis/epidemiology , Beryllium/adverse effects , Case-Control Studies , Chronic Disease , Epitopes/genetics , Female , Genotype , Glutamic Acid/genetics , HLA-DP Antigens/genetics , HLA-DP beta-Chains , HLA-DQ Antigens/genetics , HLA-DQ beta-Chains , HLA-DR Antigens/genetics , HLA-DRB1 Chains , HLA-DRB3 Chains , HLA-DRB4 Chains , HLA-DRB5 Chains , Humans , Male , Middle Aged , Polymorphism, Genetic , Severity of Illness Index
12.
Transpl Int ; 16(6): 391-5, 2003 Jun.
Article in English | MEDLINE | ID: mdl-12819869

ABSTRACT

A major manifestation of chronic allograft failure (CAF) is the accelerated onset of atherosclerotic lesions within the graft. Polymorphisms in the endothelial nitric oxide synthase (eNOS) gene have been implicated in the pathogenesis of native atherosclerosis. This study tested the hypothesis that polymorphisms in eNOS are associated with susceptibility to CAF after cadaveric renal transplantation. The patient cohort comprised 140 renal transplant recipients who had received their transplants between 1985 and 1997 at the Oxford Transplant Centre and included 61 patients with biopsy-proven CAF and 79 with stable graft function for at least 10 years (long-term survivors, LTS). Genotyping for one polymorphism in the promoter region and two polymorphisms in the coding regions of the eNOS gene was performed by polymerase chain reaction with sequence-specific primers (PCR-SSP). No association was found between any genetic variant and the development of CAF, even after stratification for other known risk factors. Statistical analysis revealed that all three polymorphisms were closely linked. We conclude that recipient eNOS gene polymorphisms do not alter the risk of CAF after renal transplantation.


Subject(s)
Graft Rejection , Kidney Transplantation , Nitric Oxide Synthase/genetics , Cadaver , Cohort Studies , Cytosine , Gene Frequency , Genetic Predisposition to Disease/genetics , Graft Rejection/genetics , Guanine , Humans , Linkage Disequilibrium , Nitric Oxide Synthase Type III , Polymorphism, Genetic , Retrospective Studies , Time Factors
13.
J Allergy Clin Immunol ; 111(4): 795-9, 2003 Apr.
Article in English | MEDLINE | ID: mdl-12704360

ABSTRACT

BACKGROUND: Laboratory animal allergy is a common occupational health problem affecting between 11% and 44% of exposed researchers. Allergy to rats and mice is most common, probably because these are the animals most frequently used. OBJECTIVE: We hypothesized that HLA class II molecules, involved in the presentation of allergen to the T cell and likely candidates for controlling the immune response, might be associated with sensitization to rat urinary proteins among laboratory animal handlers. METHODS: We undertook a cross-sectional study of 741 employees at 6 pharmaceutical sites across the United Kingdom who had contact at work with laboratory rats. In all, 109 cases with specific sensitization to rat proteins and 397 referents were HLA-typed for DRB1 and DQB1 loci. Amino acid analyses of significantly associated HLA molecules were carried out. RESULTS: HLA-DR7 was associated with sensitization (odds ratio [OR], 1.82; CI, 1.12-2.97), respiratory symptoms at work (OR, 2.96; CI, 1.64-5.37) and, most strongly, sensitization with symptoms (OR, 3.81; CI, 1.90-7.65). HLA-DR3 was protective against sensitization (OR, 0.55; CI, 0.31-0.97). Amino acid analyses of these 2 molecules indicated a biologically plausible explanation for the associations. CONCLUSION: HLA phenotype is an important determinant of individual susceptibility to sensitization and asthma among laboratory animal workers. Similar mechanisms might apply in other animal allergies.


Subject(s)
Allergens/immunology , Animals, Laboratory , HLA-DQ Antigens/genetics , HLA-DR Antigens/genetics , Hypersensitivity/etiology , Occupational Diseases/etiology , Rats/immunology , Adolescent , Adult , Aged , Alleles , Animals , Cross-Sectional Studies , Female , HLA-DQ beta-Chains , HLA-DRB1 Chains , Humans , Male , Middle Aged
14.
Arthritis Rheum ; 48(3): 807-13, 2003 Mar.
Article in English | MEDLINE | ID: mdl-12632436

ABSTRACT

OBJECTIVE: Experimental evidence suggests that inappropriate regulation of tumor necrosis factor alpha (TNF alpha) may play a role in the pathogenesis of Behçet's disease (BD). This is supported by recent reports highlighting the efficacy of anti-TNF alpha agents in the treatment of this disease. The TNF gene is encoded in the class III region of the HLA complex adjacent to HLA-B. This genetic proximity to a gene that is already widely implicated in disease susceptibility led us to investigate the association between TNF promoter polymorphisms and susceptibility to BD. METHODS: We studied 133 UK white Caucasoid patients with BD and 354 healthy controls. We attempted to dissect the contribution of individual polymorphisms in this gene-dense region by linkage disequilibrium mapping across 6 adjacent genes. RESULTS: We report a novel association with the TNF promoter allele TNF-1031C. Subsequent analysis identified 2 extended HLA haplotypes associated with BD. One of them contained the previously recognized susceptibility gene HLA-B*51, while the other was defined by HLA-B*5701. Both of these haplotypes contained the TNF promoter polymorphism -1031C, an allele that was associated with disease even in individuals who did not carry either HLA-B*51 or HLA-B*5701. CONCLUSION: The TNF-1031C allele is independently associated with susceptibility to BD in Caucasoid patients. Further studies will be required to determine the functional effects of this polymorphism, its influence in disease pathogenesis, and its role in other ethnic groups.


Subject(s)
Behcet Syndrome/genetics , Genetic Predisposition to Disease , HLA Antigens/genetics , Polymorphism, Genetic , Tumor Necrosis Factor-alpha/genetics , Behcet Syndrome/epidemiology , Behcet Syndrome/immunology , Gene Frequency , Haplotypes , Histocompatibility Testing , Humans , Molecular Epidemiology , Promoter Regions, Genetic/genetics , United Kingdom/epidemiology
15.
Hum Mol Genet ; 12(6): 647-56, 2003 Mar 15.
Article in English | MEDLINE | ID: mdl-12620970

ABSTRACT

Detailed knowledge of linkage disequilibrium (LD) is regarded as a prerequisite for population-based disease gene mapping. Variable patterns across the human genome are now recognized, both between regions and populations. Here, we demonstrate that LD may also vary within a genomic region in a haplotype-specific manner. In 864 Caucasian unrelated individuals, we describe haplotype-specific LD patterns across the human MHC by the construction of gene-specific allelic haplotypes at 25 loci between HLA-A and Tapasin. Strong and extensive LD is found across both common and rare haplotypes, suggesting that haplotype structure is influenced by factors other than genetic drift, including both selection and differential haplotype recombination. Knowledge of haplotype-specific LD in the HLA may explain the apparent discrepant data from previous studies of global LD, help delineate key areas in mapping HLA-associated diseases and, together with recombination data, provide valuable information about a population's demographic history and the selective pressures operating on it.


Subject(s)
Haplotypes , Linkage Disequilibrium , Major Histocompatibility Complex/genetics , Alleles , Antiporters/genetics , Chromosome Mapping , Genotype , HLA-A Antigens/genetics , Humans , Immunoglobulins/genetics , Linkage Disequilibrium/genetics , Membrane Transport Proteins , Models, Genetic , Polymorphism, Genetic , Recombination, Genetic
16.
Transplantation ; 75(3): 418-20, 2003 Feb 15.
Article in English | MEDLINE | ID: mdl-12589169

ABSTRACT

The immunogenicity of human leukocyte antigen (HLA)-A2 versus HLA-A28 was analyzed by antibody production, cytotoxic T-lymphocyte (CTL) induction, and graft survival. We observed that an HLA-A2 mismatched child in HLA-A28 women leads to HLA-A2 specific antibodies in 32% of the women (n=31), whereas in the case of an HLA-A28 child and HLA-A2 women (n=30), no HLA-A28 specific antibodies were found ( P<0.002). Also, the CTL precursor frequencies were significantly lower against HLA-A28 compared with CTLp frequencies against HLA-A2 ( P=0.012). Finally, the kidney graft survival was slightly better in HLA-A2 positive recipients transplanted with HLA-A28 mismatches. We can conclude that single HLA-A28 mismatches are less immunogenic in HLA-A2 individuals compared with single HLA-A2 mismatches in HLA-A28 individuals, which is probably because the mismatched epitopes on the HLA-A2 molecule are unique epitopes, whereas the mismatched epitopes on HLA-A28 are shared by other HLA-A and HLA-B molecules.


Subject(s)
Epitopes/immunology , Graft Rejection/immunology , Graft Survival/immunology , HLA-A2 Antigen/immunology , Kidney Transplantation/immunology , Antibodies/blood , Female , Fetus/immunology , HLA-A Antigens/immunology , Histocompatibility Testing , Humans , In Vitro Techniques , Pregnancy , T-Lymphocytes, Cytotoxic/immunology
17.
J Virol ; 77(3): 1927-39, 2003 Feb.
Article in English | MEDLINE | ID: mdl-12525627

ABSTRACT

Recurrent respiratory papillomatosis (RRP) is characterised by multiple laryngeal papillomas. Left untreated, the lesions enlarge, spread, and endanger the airway. Medical treatments are unsatisfactory, and repeated surgery remains the mainstay of therapy. RRP is caused by human papillomavirus (HPV) infection. However, since oral HPV infection is common and RRP is rare, other host and/or viral factors may contribute to pathogenesis. In an attempt to identify such factors, we have investigated 60 patients. The patients were HLA class I, II, and tumor necrosis factor TNF typed by sequence-specific primer PCR, and the results compared to those for 554 healthy controls by using Fisher's exact test. Peripheral blood mononuclear cell proliferative responses of 25 controls and 10 patients to HPV-11 L1 virus-like particles (VLP) were compared. Short-term VLP-specific T-cell lines were established, and recognition of L1 was analyzed. Finally, the L1 open reading frames of HPV isolates from four patients were sequenced. Susceptibility to RRP was associated with HLA DRB1*0301 (33 of 60 patients versus 136 of 554 controls, P < 0.0001). The three most severely affected patients were homozygous for this allele. A range of T-cell proliferative responses to HPV-11 VLP were observed in DRB1*0301-positive healthy donors which were comparable to those in DRB1*0301-negative controls. Individuals with juvenile-onset RRP also mounted a range of VLP responses, and their magnitude was negatively correlated with the clinical staging score (P = 0.012 by the Spearman rank correlation). DRB1*0301-positive patients who responded to L1 recognized the same epitope as did matched controls and produced similar cytokines. Sequencing of clinical isolates excluded the possibility that nonresponsiveness was the result of mutation(s) in L1.


Subject(s)
Genes, MHC Class II , Genetic Predisposition to Disease , Laryngeal Neoplasms/genetics , Neoplasm Recurrence, Local/genetics , Papilloma/genetics , Papillomaviridae/immunology , Papillomavirus Infections/genetics , Polymorphism, Genetic , Tumor Virus Infections/genetics , Adolescent , Adult , Capsid Proteins , Child , Child, Preschool , Female , Genotype , Humans , Infant , Laryngeal Neoplasms/immunology , Male , Middle Aged , Neoplasm Recurrence, Local/immunology , Oncogene Proteins, Viral/immunology , Papilloma/immunology , Papillomavirus Infections/immunology , Tumor Virus Infections/immunology , Virion/immunology
18.
Biotechniques ; Suppl: 34-8, 40-3, 2002 Jun.
Article in English | MEDLINE | ID: mdl-12083395

ABSTRACT

The cytochrome p450 (CYP) superfamily comprises enzymes that play an essential role in the transformation of medically relevant compounds. Accurate genotyping of polymorphisms in members of this family is drawing increasing interest because certain allelic variants may result in either loss of efficacy or toxic accumulation of therapeutic agents. Debrisoquine 4-hydroxylase, or CYP2D6, is among the most widely studied of the CYPs. The complexity of the CYP2D6 genomic region, including pseudogenes, gene deletions, and gene duplications, has offered numerous challenges to developing a genotyping strategy. We describe a comprehensive CYP2D6 genotyping strategy that employs both a PCR/Invader genotyping assay system and an Invader genomic copy number assay The Invader system is a homogeneous, isothermal, highly specific, and robust signal amplification system. Resultsfrom II CYP2D6 assays in an alle frequency study compare well to published allele frequency values for Caucasians. Further, Invader assays provided unambiguous genotyping determinations for 100% of the 171 samples that yielded a visible PCR product on an agarose gel. A copy number assay yielded only one equivocal result in 205 samples. We identified 17 single-copy individuals and 17 three-copy (or more) individuals.


Subject(s)
Cytochrome P-450 CYP2D6/genetics , DNA Mutational Analysis/instrumentation , DNA Mutational Analysis/methods , DNA Probes , Gene Frequency , Polymorphism, Single Nucleotide , Alleles , Base Sequence , DNA Primers , False Positive Reactions , Genome, Human , Genotype , Humans , Molecular Sequence Data , Phenotype , Polymerase Chain Reaction , Polymorphism, Genetic , Reproducibility of Results , Sensitivity and Specificity , Sequence Analysis, DNA/instrumentation , Sequence Analysis, DNA/methods , Sequence Homology
19.
Gastroenterology ; 122(4): 854-66, 2002 Apr.
Article in English | MEDLINE | ID: mdl-11910336

ABSTRACT

BACKGROUND & AIMS: Crohn's disease is a common inflammatory disorder of the gut characterized by variation in both location and behavior. Chromosome 16 and the HLA region on chromosome 6 have been implicated in susceptibility to disease. Mutations in the NOD2/CARD15 gene, recently identified on chromosome 16, have been associated with disease overall but are found in only 25% of patients. No data regarding their contribution to specific disease subtypes exist. Here we report a detailed genotype-phenotype analysis of 244 accurately characterized patients. METHODS: A total of 244 white patients with Crohn's disease recruited from a single center in the United Kingdom were studied. All patients were rigorously phenotyped and followed-up for a median time of 16 years. By using linkage disequilibrium mapping we studied 340 polymorphisms in 24 HLA genes and 3 NOD2/CARD15 polymorphisms. RESULTS: We show that NOD2/CARD15 mutations determine ileal disease only. We confirm that alleles on specific long-range HLA haplotypes determine overall susceptibility and describe novel genetic associations with susceptibility, location, and behavior of Crohn's disease. CONCLUSIONS: The clinical pattern of Crohn's disease may be defined by specific genotypes. This study may provide the basis for a future molecular classification of disease.


Subject(s)
Crohn Disease/classification , Crohn Disease/genetics , Intracellular Signaling Peptides and Proteins , Adolescent , Adult , Aged , Aged, 80 and over , Carrier Proteins/genetics , Child , Child, Preschool , Crohn Disease/mortality , Female , Genetic Predisposition to Disease , Genotype , HLA-A Antigens/genetics , HLA-DQ Antigens/genetics , Humans , Linkage Disequilibrium , Male , Middle Aged , Nod2 Signaling Adaptor Protein , Phenotype , Polymorphism, Genetic , Proteins/genetics , Survival Analysis
20.
Arthritis Rheum ; 46(1): 209-14, 2002 Jan.
Article in English | MEDLINE | ID: mdl-11817592

ABSTRACT

OBJECTIVE: To identify T cell epitopes of the human La autoantigen involved in the generation of anti-Ro/La autoantibodies. METHODS: Molecular techniques were used for HLA typing of 219 white patients with systemic lupus erythematosus and 125 white patients with primary Sjögren's syndrome. Anti-Ro/La antibody levels were measured by enzyme-linked immunosorbent assay. Peripheral blood mononuclear cell responses to an overlapping series of synthetic 15-mer peptides spanning the entire La sequence were examined in pools or individually in conventional 7-day proliferation assays. RESULTS: HLA typing confirmed that the HLA-DR3/DQ2 haplotype is closely associated with the occurrence of anti-Ro/La antibodies, and that the frequency of HLA-DR1 and DR4 haplotypes is reduced among antibody-positive patients. We identified 3 regions of the La sequence likely to contain T cell epitopes and 1 peptide, La 49-63, that generated a low-level but clear-cut T cell proliferative response. The HLA restrictions of these responses mirrored the HLA association data from the cohort study. Among individuals who were HLA-DR3 positive, there was no difference between patients and controls in the proliferative response to the La 49-63 peptide. CONCLUSION: Our data suggest that these are naive T cell responses, and that the identification of T cell epitopes involved in the generation of anti-Ro/La autoantibodies should focus on alternative candidate antigens.


Subject(s)
Autoantigens/immunology , Lupus Erythematosus, Systemic/immunology , Ribonucleoproteins/immunology , T-Lymphocytes/immunology , Amino Acid Sequence , Antibodies, Antinuclear/immunology , Autoantigens/chemistry , Autoantigens/metabolism , Caspases/metabolism , Cell Division/drug effects , Cell Division/immunology , Epitope Mapping , HLA-DQ Antigens/analysis , HLA-DR1 Antigen/analysis , HLA-DR4 Antigen/analysis , Humans , Molecular Sequence Data , Peptide Fragments/immunology , Peptide Fragments/pharmacology , Ribonucleoproteins/chemistry , Ribonucleoproteins/metabolism , Sjogren's Syndrome/immunology , T-Lymphocytes/cytology , SS-B Antigen
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