ABSTRACT
Bacterial spot caused by Xanthomonas phaseoli pv. manihotis (Xpm) is considered the main bacterial disease that affects cassava, causing significant losses when not properly managed. In the present study, a fast, sensitive, and easy-to-apply method to detect Xpm via colorimetric loop-mediated isothermal amplification (LAMP) was developed. In order to ensure the use of a unique to the target pathovar core region for primer design, 74 complete genomic sequences of Xpm together with different bacterial species and pathovars were used for comparative genomics. A total of 42 unique genes were used to design 27 LAMP primer sets, from which nine primers were synthesized and only one (Xpm_Lp1 primer set) showed sufficient efficiency in preliminary tests. The sensitivity, assessed by a serial dilution of the type strain (IBSBF 278) DNA, yielded high sensitivity, detecting up to 100 fg. The LAMP primers showed high specificity, not cross-reacting with other bacterial species or other pathovars tested, and amplifying only the Xpm isolates. Tests confirmed the high efficiency of the protocol using infected or inoculated macerated cassava leaves, without the need for additional sample treatment. The LAMP test developed in this study was able to detect Xpm in a fast, simple, and sensitive way, and it can be used to monitor the disease under laboratory and field conditions.
ABSTRACT
A single loop-mediated isothermal amplification (LAMP) assay was developed for specific detection of both pathogens that cause bacterial blight in common bean, Xanthomonas phaseoli pv. phaseoli (Xpp) and Xanthomonas citri pv. fuscans (Xcf). The objective was to provide a simple, easy-to-use, specific, and sensitive method to investigate the presence of one or both pathogens in plant material and seeds for routine diagnosis. The detection limits for both pathogens were 10 CFU/ml for cell suspensions and 1 fg of DNA, whereas in conventional PCR, the primers detected up to 105 CFU/ml and 1 ng of DNA. Specificity was confirmed by testing DNA from bean leaves, other Xanthomonas species, common fungal and bacterial bean pathogens, and bacteria from the leaf microbiota. The method was tested with bean leaves inoculated with Xpp, and the pathogen could be detected from 4 h up to 15 days postinoculation, even before disease symptoms were visible. When the method was applied to bacterium detection (Xpp or Xcf) in seed lots from infected plants, the bacterium detection rate was 100% (24 of 24). The pathogens were detected in seeds incubated for just 1 h in saline solution (0.85%), reducing the time needed for bacterium detection. The LAMP assay could be useful as a tool in bean bacterial blight management. Rapid and sensitive detection of bacteria in bean seed lots would reduce the risks of planting highly contaminated seeds in environments favorable to blight multiplication.
Subject(s)
Agriculture , Nucleic Acid Amplification Techniques , Phaseolus , Xanthomonas , Agriculture/methods , Limit of Detection , Phaseolus/microbiology , Plant Diseases/microbiology , Seeds/microbiology , Xanthomonas/physiologyABSTRACT
ABSTRACT:More efficient strains of Rhizobiumhave been selected for use in common bean. However, little effort was made with lines selection. The main goals of this research were to verify the presence of interaction involving common bean elite lines utilizing Nitrogen fertilization and Rhizobiuminoculation for grain yield and to identify lines with superior yields utilizing biological nitrogen fixation. Eight field trials were conducted at four location-years in Brazilian savanna, using randomized complete blocks design with three replications. Each trial was composed of 17 carioca elite lines. Every two tests in each location were planted side by side, one with mineral nitrogen fertilization (90kg) and the other one with inoculation with Rhizobium tropiciSEMIA 4080 strain. Elite lines interaction with nitrogen fertilization/inoculation was not important, so, it is possible to select lines for utilization in both growing systems. In some locations-years, interaction between lines and Rhizobiuminoculation was most affected by environment conditions, causing modification in lines classification according to the type of nitrogen supplying used. In general, the lines presented higher yields when fertilized with mineral nitrogen as compared with inoculation. The cultivar 'BRS Pontal' presented high and similar yields under both systems of nitrogen supply.
RESUMO:Estirpes de rizóbio mais eficientes têm sido selecionadas para uso em feijoeiro-comum. Entretanto, pouco tem sido feito na seleção de linhagens mais eficientes. Os objetivos desse trabalho foram verificar a presença de interação entre linhagens elite de feijoeiro-comum com uso de fertilização nitrogenada e inoculação com rizóbio, para produtividade de grãos e identificar linhagens com produção superior, quando inoculadas com rizóbio. Oito experimentos foram conduzidos em quatro locais/anos no cerrado brasileiro, compostos por 17 linhagens elite, em blocos ao acaso com três repetições. Em cada local/ano foram conduzidos dois experimentos, lado a lado: um com fertilização mineral de nitrogênio (90kg) e outro com inoculação com rizóbio. A interação entre as linhagens elite e o tipo de fornecimento de nitrogênio não foi importante, indicando que é possível selecionar linhagens para uso simultâneo nos dois sistemas de cultivo. Em alguns locais, a interação entre as linhagens e a inoculação com rizóbio foi mais afetada pelo ambiente, causando modificações na classificação das linhagens nos dois tipos de fornecimento de nitrogênio. De modo geral, a produtividade foi maior utilizando-se fertilização mineral, quando comparada com a inoculação. A cultivar 'BRS Pontal' apresentou produtividade alta e semelhante nos dois sistemas de fornecimento de nitrogênio.
