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1.
J Cell Biochem ; 118(7): 1689-1698, 2017 07.
Article in English | MEDLINE | ID: mdl-27922187

ABSTRACT

Tomentosin, a natural sesquiterpene lactone purified from of Inula viscosa L., was investigated for its anti-proliferative, telomere shortening, and apoptotic effects on human cervical cancer HeLa and SiHa cell lines. Tomentosin was found to inhibit the growth of SiHa and HeLa cell lines in dose and time-dependent manner (IC50 values of 7.10 ± 0.78 µM and 5.87 ± 0.36 µM, respectively after 96 h of treatment). As evidenced by TTAGGG telomere length assay, tomentosin target specifically the telomeric overhang lengthening. This was confirmed by the evaluation of the cytotoxic effects of tomentosin in the foetal fibroblast Wi38 and JW10 cells which were derived from Wi38 and express hTERT, the telomerase catalytic subunit. We found that JW10 cells are 4.7-fold more sensitive to tomentosin which argues for telomere as its specific target. Furthermore, we found that tomentosin mediate this cytotoxic effect by inducing apoptosis and cell cycle arrest at G2/M phase. Morphological features of treated cells, as evidenced by Hoechst 33324 staining, revealed that the cytotoxic effect was due to induction of apoptosis. This was accompanied by pro-caspase-3 cleavage, an increase in caspase-3 activity and a cleavage of poly (ADP-ribose) polymerase (PARP). Moreover, tomentosin induced a decrease in mitochondrial membrane potential (ΔΨm) and an increase in reactive oxygen species (ROS), accompanied by a decrease in Bcl-2 expression. This indicates that tomentosin-induced apoptosis may involve a mitochondria-mediated signaling pathway. This study provides the first evidence that tomentosin targets telomere machinery and induces apoptosis in cervical cancer cells. The molecular mechanism underlying tomentosin-induced apoptosis may involve a mitochondria-mediated signaling pathway. J. Cell. Biochem. 118: 1689-1698, 2017. © 2016 Wiley Periodicals, Inc.


Subject(s)
Lactones/pharmacology , Sesquiterpenes/pharmacology , Telomere/genetics , Uterine Cervical Neoplasms/genetics , Apoptosis/drug effects , Apoptosis/genetics , Blotting, Western , Caspase 3/genetics , Caspase 3/metabolism , Cell Cycle Checkpoints/drug effects , Cell Cycle Checkpoints/genetics , Cell Division/drug effects , Cell Division/genetics , Cell Line, Tumor , Cell Proliferation/drug effects , Cell Proliferation/genetics , Female , G2 Phase/drug effects , G2 Phase/genetics , HeLa Cells , Humans , Membrane Potential, Mitochondrial/drug effects , Membrane Potential, Mitochondrial/genetics , Reactive Oxygen Species/metabolism , Telomere/drug effects
2.
Eur J Cell Biol ; 95(9): 331-41, 2016 Sep.
Article in English | MEDLINE | ID: mdl-27349711

ABSTRACT

Several studies reported the benefits of switching from anticalcineurins to mTOR inhibitors to avoid cancer occurrence after organ transplantation. The purpose of our study was to determine in vivo biological markers to explain these benefits. Cellular changes related to cellular senescence and DNA damage were analyzed in peripheral blood lymphocytes. Thirty-five kidney transplanted patients receiving anticalcineurins were investigated: 17 patients were proposed to switch to rapamycin and 18 patients with similar age and transplantation duration, continued anticalcineurins. Rapamycin effects were studied one year after the switch. Thirteen healthy volunteers and 18 hemodialyzed patients were evaluated as control. Compared with the healthy group, hemodialyzed and transplanted patients exhibited a significant decrease in telomere length, an increase in p16(INK4A) mRNA expression and in lymphocytes with 53BP1 foci. A destabilization of the shelterin complexes was suggested by a significant TIN2 mRNA decrease in transplanted patients compared with controls and a significant increase in TRF1, TRF2 and POT1 expression in switch-proposed patients compared with the non-switched subgroup. Rapamycin treatment resulted in a significant decrease in DNA damage and a slight TIN2 increase. In vitro experiments strengthened in vivo results showing that rapamycin but not FK506 induced a significant DNA damage decrease and TIN2 expression increase compared with controls. The roles of rapamycin in the decrease in DNA damage in vivo and the rescue of shelterin gene expression are demonstrated for the first time. These data provide new insights into understanding of how rapamycin may overcome genomic injuries.


Subject(s)
DNA Damage/drug effects , Kidney Transplantation/methods , Lymphocytes/drug effects , Sirolimus/therapeutic use , Aged , Calcineurin Inhibitors/adverse effects , Calcineurin Inhibitors/therapeutic use , Female , Humans , Immunosuppressive Agents/adverse effects , Immunosuppressive Agents/therapeutic use , Kidney Diseases/blood , Kidney Diseases/surgery , Kidney Transplantation/adverse effects , Lymphocytes/ultrastructure , Male , Middle Aged , Telomere/drug effects
3.
Br J Haematol ; 174(1): 57-70, 2016 07.
Article in English | MEDLINE | ID: mdl-26970083

ABSTRACT

Cancer cells protect their telomere ends from erosion through reactivation of telomerase or by using the Alternative Lengthening of Telomere (ALT) mechanism that depends on homologous recombination. Chronic lymphocytic leukaemia (CLL) B cells are characterized by almost no telomerase activity, shelterin deregulation and telomere fusions. To characterize telomeric maintenance mechanisms in B-CLL patients, we measured their telomere length, telomerase expression and the main hallmarks of the ALT activity i.e. C-circle concentration, an extra-chromosomal telomere repeat (ECTR), and the level of telomeric sister chromatid exchange (T-SCE) rate. Patients showed relative homogenous telomere length although almost no TERT transcript and nearly no C-circle were evidenced. Nevertheless, compared with normal B cells, B-CLL cells showed an increase in T-SCE rate that was correlated with a strong down-regulation of the topoisomerase III alpha (TOP3A) expression, involved in the dissolution of Holliday Junctions (HJ), together with an increased expression of SLX1A, SLX4, MUS81 and GEN1, involved in the resolution of HJ. Altogether, our results suggest that the telomere maintenance mechanism of B-CLL cells do not preferentially use telomerase or ALT. Rather, the rupture of the dissolvasome/resolvasome balance may increase telomere shuffling that could homogenize telomere length, slowing telomere erosion in this disease.


Subject(s)
Leukemia, Lymphocytic, Chronic, B-Cell/genetics , Sister Chromatid Exchange , Telomere/genetics , Adult , Aged , DNA, Cruciform , Humans , Leukemia, Lymphocytic, Chronic, B-Cell/pathology , Middle Aged , Telomerase/analysis , Telomere Homeostasis
5.
Oncol Rep ; 27(1): 232-7, 2012 Jan.
Article in English | MEDLINE | ID: mdl-21935580

ABSTRACT

Resistance to etoposide has been associated with the overexpression of P-glycoprotein and MRP1 in human tumor cells. However, the role of BCRP in resistance to etoposide has not been clearly established, especially the significance of arginine 482 mutations in drug transport (cellular uptake and efflux). Different levels of resistance to etoposide have been recently observed in cells expressing BCRP in terms of cytotoxicity. The aim of this work was to study the effects of these mutations on the functional involvement of BCRP in etoposide transport. HEK293 cells were transfected with an empty vector (HEK/V), the vector bearing the wild-type BCRP (HEK/R482), the mutant arginine-482-glycine (HEK/R482G) or the mutant arginine-482-threonine (HEK/R482T). MTT assay was used to study the cytotoxic effect of etoposide and [3H]-etoposide was used to determine cellular drug uptake and efflux. Data show that HEK/R482G cells displayed the highest levels of resistance to etoposide. Cellular [3H]-etoposide uptake was lower in HEK/R482, HEK/R482G and HEK/R482T cells compared to HEK/V cells. In addition, cellular [3H]-etoposide uptake in HEK/R482G was the lowest. Drug efflux measurements showed that fumitremorgin C was able to increase the residual cellular [3H]-etoposide uptake in BCRP-transfected cells and especially in HEK/R482G ones. Our data show that the R482G mutation in BCRP is able to increase efflux of etoposide and that mutation analysis at codon 482 may be of clinical importance in cancers treated with etoposide.


Subject(s)
ATP-Binding Cassette Transporters/genetics , Antineoplastic Agents, Phytogenic/metabolism , Drug Resistance, Neoplasm/genetics , Etoposide/metabolism , Neoplasm Proteins/genetics , Point Mutation , ATP Binding Cassette Transporter, Subfamily G, Member 2 , Arginine/genetics , Biological Transport/genetics , Flow Cytometry , Glycine/genetics , HEK293 Cells , Humans , Real-Time Polymerase Chain Reaction , Reverse Transcriptase Polymerase Chain Reaction , Transfection
6.
BMC Med Genet ; 12: 144, 2011 Oct 25.
Article in English | MEDLINE | ID: mdl-22026926

ABSTRACT

BACKGROUND: The epidermal growth factor receptor (EGFR), a member of the ErbB family of receptors, is a transmembrane tyrosine kinase (TK) activated by the binding of extracellular ligands of the EGF-family and involved in triggering the MAPK signaling pathway, which leads to cell proliferation. Mutations in the EGFR tyrosine kinase domain are frequent in non-small-cell lung cancer (NSCLC). However, to date, only very few, mainly non-European, studies have reported rare EGFR mutations in colorectal cancer (CRC). METHODS: We screened 236 clinical tumor samples from European patients with advanced CRC by direct DNA sequencing to detect potential, as yet unknown mutations, in the EGFR gene exons 18 to 21, mainly covering the EGFR TK catalytic domain. RESULTS: EGFR sequences showed somatic missense mutations in exons 18 and 20 at a frequency of 2.1% and 0.4% respectively. Somatic SNPs were also found in exons 20 and 21 at a frequency of about 3.1% and 0.4% respectively. Of these mutations, four have not yet been described elsewhere. CONCLUSIONS: These mutation frequencies are higher than in a similarly sized population characterized by Barber and colleagues, but still too low to account for a major role played by the EGFR gene in CRC.


Subject(s)
Colorectal Neoplasms/genetics , ErbB Receptors/genetics , Mutation, Missense/genetics , White People/genetics , Base Sequence , DNA Mutational Analysis , Exons , Gene Frequency , Humans , Polymorphism, Single Nucleotide , Protein Structure, Tertiary , Protein-Tyrosine Kinases/genetics
7.
Mol Cancer ; 9: 115, 2010 May 20.
Article in English | MEDLINE | ID: mdl-20487546

ABSTRACT

BACKGROUND: Chronic lymphocytic leukemia (CLL) cells are often affected by genomic aberrations targeting key regulatory genes. Although fludarabine is the standard first line therapy to treat CLL, only few data are available about the resistance of B cells to this purine nucleoside analog in vivo. Here we sought to increase our understanding of fludarabine action and describe the mechanisms leading to resistance in vivo. We performed an analysis of genomic aberrations, gene expression profiles, and microRNAs expression in CLL blood B lymphocytes isolated during the course of patients' treatment with fludarabine. RESULTS: In sensitive patients, the differentially expressed genes we identified were mainly involved in p53 signaling, DNA damage response, cell cycle and cell death. In resistant patients, uncommon genomic abnormalities were observed and the resistance toward fludarabine could be characterized based on the expression profiles of genes implicated in lymphocyte proliferation, DNA repair, and cell growth and survival. Of particular interest in some patients was the amplification of MYC (8q) observed both at the gene and transcript levels, together with alterations of myc-transcriptional targets, including genes and miRNAs involved in the regulation of cell cycle and proliferation. Differential expression of the sulfatase SULF2 and of miR-29a, -181a, and -221 was also observed between resistant and sensitive patients before treatment. These observations were further confirmed on a validation cohort of CLL patients treated with fludarabine in vitro. CONCLUSION: In the present study we identified genes and miRNAs that may predict clinical resistance of CLL to fludarabine, and describe an interesting oncogenic mechanism in CLL patients resistant to fludarabine by which the complete MYC-specific regulatory network was altered (DNA and RNA levels, and transcriptional targets). These results should prove useful for understanding and overcoming refractoriness to fludarabine and also for predicting the clinical outcome of CLL patients before or early during their treatment.


Subject(s)
Antineoplastic Agents/therapeutic use , Drug Resistance, Neoplasm/genetics , Gene Expression Profiling , Leukemia, Lymphocytic, Chronic, B-Cell/genetics , MicroRNAs/genetics , Vidarabine/analogs & derivatives , Aged , Comparative Genomic Hybridization , Female , Gene Expression/drug effects , Genes, myc/genetics , Humans , In Situ Hybridization, Fluorescence , Leukemia, Lymphocytic, Chronic, B-Cell/drug therapy , Male , Middle Aged , Oligonucleotide Array Sequence Analysis , Reverse Transcriptase Polymerase Chain Reaction , Tumor Suppressor Protein p53/genetics , Vidarabine/therapeutic use
8.
Mol Biol Cell ; 20(10): 2563-71, 2009 May.
Article in English | MEDLINE | ID: mdl-19321665

ABSTRACT

The telomere end-protection complex prevents the ends of linear eukaryotic chromosomes from degradation or inappropriate DNA repair. The homodimeric double-stranded DNA-binding protein, Trf1, is a component of this complex and is essential for mouse embryonic development. To define the requirement for Trf1 in somatic cells, we deleted Trf1 in chicken DT40 cells by gene targeting. Trf1-deficient cells proliferated as rapidly as control cells and showed telomeric localization of Trf2, Rap1, and Pot1. Telomeric G-strand overhang lengths were increased in late-passage Trf1-deficient cells, although telomere lengths were unaffected by Trf1 deficiency, as determined by denaturing Southern and quantitative FISH analysis. Although we observed some clonal variation in terminal telomere fragment lengths, this did not correlate with cellular Trf1 levels. Trf1 was not required for telomere seeding, indicating that de novo telomere formation can proceed without Trf1. The Pin2 isoform and a novel exon 4, 5-deleted isoform localized to telomeres in Trf1-deficient cells. Trf1-deficient cells were sensitive to DNA damage induced by ionizing radiation. Our data demonstrate that chicken DT40 B cells do not require Trf1 for functional telomere structure and suggest that Trf1 may have additional, nontelomeric roles involved in maintaining genome stability.


Subject(s)
Telomere/metabolism , Telomeric Repeat Binding Protein 1/metabolism , Animals , Cell Line , Cell Proliferation/radiation effects , Chickens , Gene Targeting , In Situ Hybridization, Fluorescence , Phenotype , RNA Splicing/radiation effects , Radiation, Ionizing , Telomerase/metabolism , Telomeric Repeat Binding Protein 1/deficiency , Transfection
9.
EMBO J ; 27(10): 1513-24, 2008 May 21.
Article in English | MEDLINE | ID: mdl-18418389

ABSTRACT

Topoisomerase (Topo) IIIalpha associates with BLM helicase, which is proposed to be important in the alternative lengthening of telomeres (ALT) pathway that allows telomere recombination in the absence of telomerase. Here, we show that human Topo IIIalpha colocalizes with telomeric proteins at ALT-associated promyelocytic bodies from ALT cells. In these cells, Topo IIIalpha immunoprecipitated with telomere binding protein (TRF) 2 and BLM and was shown to be associated with telomeric DNA by chromatin immunoprecipitation, suggesting that these proteins form a complex at telomere sequences. Topo IIIalpha depletion by small interfering RNA reduced ALT cell survival, but did not affect telomerase-positive cell lines. Moreover, repression of Topo IIIalpha expression in ALT cells reduced the levels of TRF2 and BLM proteins, provoked a strong increase in the formation of anaphase bridges, induced the degradation of the G-overhang signal, and resulted in the appearance of DNA damage at telomeres. In contrast, telomere maintenance and TRF2 levels were unaffected in telomerase-positive cells. We conclude that Topo IIIalpha is an important telomere-associated factor, essential for telomere maintenance and chromosome stability in ALT cells, and speculate on its potential mechanistic function.


Subject(s)
Chromosomal Instability , DNA Topoisomerases, Type I/metabolism , Telomere/metabolism , Telomere/ultrastructure , Adenosine Triphosphatases/analysis , Adenosine Triphosphatases/metabolism , Anaphase , Cell Line , Cell Proliferation/drug effects , Chromatin Immunoprecipitation , Chromosomal Instability/genetics , DNA Helicases/analysis , DNA Helicases/metabolism , DNA Topoisomerases, Type I/analysis , DNA Topoisomerases, Type I/genetics , Humans , Neoplasm Proteins/analysis , Neoplasm Proteins/metabolism , Nuclear Proteins/analysis , Nuclear Proteins/metabolism , Promyelocytic Leukemia Protein , Protein Subunits/analysis , Protein Subunits/metabolism , RNA, Small Interfering/genetics , RNA, Small Interfering/pharmacology , RecQ Helicases , Shelterin Complex , Telomere-Binding Proteins/analysis , Telomere-Binding Proteins/metabolism , Telomeric Repeat Binding Protein 2/analysis , Telomeric Repeat Binding Protein 2/metabolism , Transcription Factors/analysis , Transcription Factors/metabolism , Tumor Suppressor Proteins/analysis , Tumor Suppressor Proteins/metabolism
10.
DNA Repair (Amst) ; 7(5): 713-24, 2008 May 03.
Article in English | MEDLINE | ID: mdl-18308646

ABSTRACT

Telomere repeat sequences are added to linear chromosome ends by telomerase, an enzyme comprising a reverse transcriptase (TERT) and an RNA template component (TR). We aimed to investigate TR in the DT40 B-cell tumour line using gene targeting, but were unable to generate TR nulls, suggesting a requirement for TR in DT40 proliferation. Disruption of one TR allele reduced telomerase activity and caused a progressive decline in telomere and G-strand overhang length. We then examined the interactions between TR and cellular DNA double-strand break (DSB) repair. Deletion in TR+/- cells of the gene encoding the non-homologous end-joining protein, Ku70, caused rapid loss of G-strand overhangs. Ku70-/-TR+/- cells proliferated more slowly than either single mutant and showed frequent mitotic aberrations. Activation of the DNA damage response was observed in TR-deficient cells and was exacerbated by Ku deficiency, although frequent telomeric DNA damage signals were not observed until late passages. This activation of the DNA damage response was suppressed by deletion of Rad54, a key homologous recombination gene. These findings suggest that Ku and telomerase cooperate to block homologous recombination from acting on telomeres.


Subject(s)
Antigens, Nuclear/metabolism , Chickens/genetics , Chickens/metabolism , DNA-Binding Proteins/metabolism , Genomic Instability/genetics , RNA/genetics , Telomerase/genetics , Animals , Cell Line, Tumor , Cell Proliferation , Chromosome Aberrations , DNA Damage , Heterozygote , Ku Autoantigen , RNA/metabolism , Telomerase/metabolism , Telomere/genetics , Telomere-Binding Proteins/metabolism
11.
J Biol Chem ; 281(50): 38721-9, 2006 Dec 15.
Article in English | MEDLINE | ID: mdl-17050546

ABSTRACT

Telomestatin is a potent G-quadruplex ligand that interacts with the 3' telomeric overhang, leading to its degradation, and induces a delayed senescence and apoptosis of cancer cells. POT1 and TRF2 were recently identified as specific telomere-binding proteins involved in telomere capping and t-loop maintenance and whose interaction with telomeres is modulated by telomestatin. We show here that the treatment of HT1080 human tumor cells by telomestatin induces a rapid decrease of the telomeric G-overhang and of the double-stranded telomeric repeats. Telomestatin treatment also provokes a strong decrease of POT1 and TRF2 from their telomere sites, suggesting that the ligand triggers the uncapping of the telomere ends. The effect of the ligand is associated with an increase of the gamma-H2AX foci, one part of them colocalizing at telomeres, thus indicating the occurrence of a DNA damage response at the telomere, but also the presence of additional DNA targets for telomestatin. Interestingly, the expression of GFP-POT1 in HT1080 cells increases both telomere and G-overhang length. As compared with HT1080 cells, HT1080GFP-POT1 cells presented a resistance to telomestatin treatment characterized by a protection to the telomestatin-induced growth inhibition and the G-overhang shortening. This protection is related to the initial G-overhang length rather than to its degradation rate and is overcome by increased telomestatin concentration. Altogether these results suggest that telomestatin induced a telomere dysfunction in which G-overhang length and POT1 level are important factors but also suggest the presence of additional DNA sites of action for the ligand.


Subject(s)
Oxazoles/pharmacology , Telomere-Binding Proteins/physiology , Telomere , Base Sequence , Cell Line, Tumor , Chromatin Immunoprecipitation , DNA Damage , DNA Primers , Fluorescent Antibody Technique , Green Fluorescent Proteins/genetics , Humans , Shelterin Complex , Telomere-Binding Proteins/genetics
12.
Cancer Res ; 66(14): 6908-12, 2006 Jul 15.
Article in English | MEDLINE | ID: mdl-16849533

ABSTRACT

Telomestatin is a potent G-quadruplex ligand that specifically interacts with the 3' telomeric overhang, leading to its degradation and that induces a delayed senescence and apoptosis of cancer cells. Protection of Telomere 1 (POT1) was recently identified as a specific single-stranded telomere-binding protein involved in telomere capping and T-loop maintenance. We showed here that a telomestatin treatment inhibits POT1 binding to the telomeric overhang in vitro. The treatment of human EcR293 cells by telomestatin induces a dramatic and rapid delocalization of POT1 from its normal telomere sites but does not affect the telomere localization of the double-stranded telomere-binding protein TRF2. Thus, we propose that G-quadruplex stabilization at telomeric G-overhang inactivates POT1 telomeric function, generating a telomere dysfunction in which chromosome ends are no longer properly protected.


Subject(s)
DNA/metabolism , Oxazoles/pharmacology , Telomere-Binding Proteins/antagonists & inhibitors , Telomere/metabolism , Cell Line , DNA/biosynthesis , DNA/drug effects , DNA/genetics , G-Quadruplexes , Green Fluorescent Proteins/genetics , Green Fluorescent Proteins/metabolism , Humans , Kidney/cytology , Kidney/drug effects , Kidney/metabolism , Nuclear Proteins/metabolism , Protein Binding , Recombinant Fusion Proteins/genetics , Recombinant Fusion Proteins/metabolism , Shelterin Complex , TATA Box Binding Protein-Like Proteins/metabolism , Telomere/genetics , Telomere-Binding Proteins/genetics , Telomere-Binding Proteins/metabolism , Telomeric Repeat Binding Protein 2 , Transfection
13.
J Bacteriol ; 186(16): 5355-65, 2004 Aug.
Article in English | MEDLINE | ID: mdl-15292136

ABSTRACT

The duplicated hasR and hasL genes of Streptomyces ambofaciens encode alternative sigma factors (named sigma(B(R)) and sigma(B(L))) belonging to the sigma(B) general stress response family in Bacillus subtilis. The duplication appears to be the result of a recent event that occurred specifically in S. ambofaciens. The two genes are 98% identical, and their deduced protein products exhibit 97% identity at the amino acid level. In contrast with the coding sequences, their genetic environments and their transcriptional control are strongly divergent. While hasL is monocistronic, hasR is arranged in a polycistronic unit with two upstream open reading frames, arsR and prsR, that encode putative anti-anti-sigma and anti-sigma factors, respectively. Transcription of each has gene is initiated from two promoters. In each case, one promoter was shown to be developmentally controlled and to be similar to those recognized by the B. subtilis general stress response sigma factor sigma(B). Expression from this type of promoter for each of the has genes dramatically increases during the course of growth in liquid or on solid media and following oxidative and osmotic stresses. Reverse transcription-PCR measurements indicate that hasR is 100 times more strongly expressed than hasL from the sigma(B)-like promoter. Transcription from the second promoter of each gene (located upstream of arsR in the case of the hasR locus) appears to be constitutive and weak. Quantitative transcriptional analysis in single and double has mutant strains revealed that sigma(B(R)) and sigma(B(L)) direct their own transcription as well as that of their duplicates. Only a slight sensitivity in response to oxidative conditions could be assigned to either single or double mutants, revealing the probable redundancy of the sigma factors implied in stress response in Streptomyces.


Subject(s)
Adaptation, Physiological , Gene Duplication , Gene Expression Regulation, Bacterial , Sigma Factor/genetics , Streptomyces/genetics , Transcription, Genetic , Bacillus subtilis/genetics , Bacterial Proteins/genetics , Bacterial Proteins/metabolism , DNA, Bacterial/chemistry , DNA, Bacterial/isolation & purification , Gene Deletion , Gene Order , Genes, Bacterial , Molecular Sequence Data , Mutagenesis, Insertional , Mutation , Operon , Osmotic Pressure , Oxidative Stress , Promoter Regions, Genetic , RNA, Bacterial/analysis , RNA, Messenger/analysis , Sequence Analysis, DNA , Sequence Homology, Amino Acid , Sequence Homology, Nucleic Acid , Sigma Factor/metabolism , Streptomyces/growth & development , Streptomyces/physiology , Trans-Activators/genetics
14.
Mol Microbiol ; 50(2): 411-25, 2003 Oct.
Article in English | MEDLINE | ID: mdl-14617168

ABSTRACT

Two mutant strains harbouring a linear chromosome whose size reached 13 Mb (versus approximately 8 Mb for the wild type) were characterized. This chromosomal structure resulted from the fusion in inverted orientation of two chromosomes partially deleted on the same arm. The fusion occurred by illegitimate recombination between 6 bp repeats. This chromosomal structure was inherited in strict association with a high level of genetic instability (30% of mutants in a single progeny, phenomenon also called hypervariability) and chromosomal instability. In contrast, derivatives, which did not retain the chromosome fusion, showed a wild-type-like instability frequency (c. 1%). Stabilization of the chromosomal structure occurred by chromosome arm replacement or circularization. A high variability of the terminal inverted repeat (TIR) length in the rescued chromosomes (from 5 kb to approximately 1.4 Mb for linear derivatives) was observed. Mutant lineages harbouring the chromosomal fusion are characterized by a highly heterogeneous distribution of DNA in the spores, by the presence of spores without DNA as well as aberrant sporulation figures, and by the production of spores with a low germination rate. The wild-type characteristics were restored in the descendants, which lost the chromosomal fusion. Thus, the fusion of deleted chromosomes initiates a cycle of chromosome instability sharing several levels of analogy with the behaviour of dicentric chromosomes in eukaryotes. We propose that the high instability of the fused chromosomes results from the duplication of a region involved in partitioning of the chromosomes (parAB-oriC ).


Subject(s)
Chromosomes, Bacterial , DNA, Bacterial/genetics , Gene Rearrangement , Genomic Instability , Streptomyces/genetics , Genome, Bacterial , Mutation , Recombination, Genetic , Streptomyces/growth & development
15.
Microbiology (Reading) ; 148(Pt 3): 633-642, 2002 Mar.
Article in English | MEDLINE | ID: mdl-11882697

ABSTRACT

The nucleotide composition of the internally transcribed sequences (ITSs) of the six rDNA operons of two strains of Streptomyces ambofaciens were determined. Four variable and five conserved nucleotide blocks were distinguished. Five different modular organizations were revealed for each strain and no homologous loci showed the same succession of blocks. This suggests that recombination frequently occurs between the rDNA loci, leading to the exchange of nucleotide blocks. The modular structure was also observed within the ITSs of Streptomyces coelicolor M145, which is closely related to Streptomyces ambofaciens, and Streptomyces griseus 2247, showing the same number of constant blocks but with fewer variable regions. This confirms that a high degree of ITS variability is a common characteristic among Streptomyces spp. The functional significance of the combinations of variable and constant nucleotide blocks of the ITS was examined by in silico prediction of secondary structures from nucleotide sequences. The secondary structures were shown to be analogous whatever the combination of variable/constant blocks at the intragenomic, intraspecific and interspecific levels.


Subject(s)
DNA, Ribosomal Spacer/genetics , Polymorphism, Genetic , RNA, Ribosomal, 16S/genetics , RNA, Ribosomal, 23S/genetics , Streptomyces/genetics , Base Sequence , DNA, Bacterial/chemistry , DNA, Bacterial/genetics , DNA, Ribosomal Spacer/chemistry , Evolution, Molecular , Molecular Sequence Data , Phylogeny , Recombination, Genetic , Sequence Analysis, DNA , Streptomyces/chemistry
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