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1.
Virchows Arch ; 472(5): 717-725, 2018 May.
Article in English | MEDLINE | ID: mdl-29333594

ABSTRACT

Wild-type status of KRAS and the NRAS gene (exon 2, 3, and 4) in the tumor should be determined before treatment of metastatic colorectal cancer (mCRC) patients with EGFR-targeting agents. There is a large variation in test methods to determine RAS status, and more sensitive detection methods were recently introduced. Data from quality assessment programs indicate substantial error rates. This study assessed the completeness and correctness of RAS testing in European laboratories that successfully passed external quality assessment (EQA). Participants were requested to send material of their most recent ten patients with mCRC who had been tested for RAS status. Isolated DNA, a hematoxylin and eosin stained tissue slide with a marked area for macrodissection and accompanying patient reports were requested. Samples were reevaluated in a reference laboratory by using a next-generation sequencing approach. In total, 31 laboratories sent in the requested material (n = 309). Despite regulations for anti-EGFR therapy, one institute did not perform full RAS testing. Reanalysis was possible for 274 samples with sufficient DNA available. In the hotspot codons of KRAS and NRAS, seven discordant results were obtained in total, five of them leading to a different prediction of anti-EGFR therapy efficacy (2%; n = 274). Results show that oncologists can rely on the quality of laboratories with good performance in EQA. Oncologists need to be aware that the testing laboratory participates successfully in EQA programs. Some EQA providers list the good performing laboratories on their website.


Subject(s)
Colorectal Neoplasms/genetics , GTP Phosphohydrolases/analysis , Medical Oncology/standards , Membrane Proteins/analysis , Proto-Oncogene Proteins p21(ras)/analysis , Quality Assurance, Health Care , GTP Phosphohydrolases/genetics , Genetic Testing/standards , Humans , Membrane Proteins/genetics , Proto-Oncogene Proteins p21(ras)/genetics
2.
Leukemia ; 31(4): 821-828, 2017 04.
Article in English | MEDLINE | ID: mdl-27733777

ABSTRACT

The contribution of genetic predisposing factors to the development of pediatric acute lymphoblastic leukemia (ALL), the most frequently diagnosed cancer in childhood, has not been fully elucidated. Children presenting with multiple de novo leukemias are more likely to suffer from genetic predisposition. Here, we selected five of these patients and analyzed the mutational spectrum of normal and malignant tissues. In two patients, we identified germline mutations in TYK2, a member of the JAK tyrosine kinase family. These mutations were located in two adjacent codons of the pseudokinase domain (p.Pro760Leu and p.Gly761Val). In silico modeling revealed that both mutations affect the conformation of this autoregulatory domain. Consistent with this notion, both germline mutations promote TYK2 autophosphorylation and activate downstream STAT family members, which could be blocked with the JAK kinase inhibitor I. These data indicate that germline activating TYK2 mutations predispose to the development of ALL.


Subject(s)
Germ-Line Mutation , Precursor Cell Lymphoblastic Leukemia-Lymphoma/genetics , TYK2 Kinase/genetics , Alleles , Amino Acid Substitution , Exome , Female , Genetic Association Studies , Genetic Predisposition to Disease , Genotype , High-Throughput Nucleotide Sequencing , Humans , Male , Models, Molecular , Phosphorylation , Polymorphism, Single Nucleotide , Precursor Cell Lymphoblastic Leukemia-Lymphoma/diagnosis , Precursor Cell Lymphoblastic Leukemia-Lymphoma/metabolism , Protein Binding , Protein Conformation , Protein Interaction Domains and Motifs , STAT Transcription Factors/metabolism , TYK2 Kinase/chemistry , TYK2 Kinase/metabolism
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