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1.
Evolution ; 67(8): 2323-34, 2013 Aug.
Article in English | MEDLINE | ID: mdl-23888854

ABSTRACT

Mimetic resemblance in unpalatable butterflies has been studied by evolutionary biologists for over a century, but has largely focused on the convergence in wing color patterns. In Heliconius numata, discrete color-pattern morphs closely resemble comimics in the distantly related genus Melinaea. We examine the possibility that the shape of the butterfly wing also shows adaptive convergence. First, simple measures of forewing dimensions were taken of individuals in a cross between H. numata morphs, and showed quantitative differences between two of the segregating morphs, f. elegans and f. silvana. Second, landmark-based geometric morphometric and elliptical Fourier outline analyses were used to more fully characterize these shape differences. Extension of these techniques to specimens from natural populations suggested that, although many of the coexisting morphs could not be discriminated by shape, the differences we identified between f. elegans and f. silvana hold in the wild. Interestingly, despite extensive overlap, the shape variation between these two morphs is paralleled in their respective Melinaea comimics. Our study therefore suggests that wing-shape variation is associated with mimetic resemblance, and raises the intriguing possibility that the supergene responsible for controlling the major switch in color pattern between morphs also contributes to wing shape differences in H. numata.


Subject(s)
Butterflies/anatomy & histology , Butterflies/genetics , Wings, Animal/anatomy & histology , Adaptation, Biological , Animals , Butterflies/classification , Butterflies/physiology , Genetic Variation , Phenotype , Wings, Animal/physiology
2.
Am J Hum Genet ; 87(2): 173-88, 2010 Aug 13.
Article in English | MEDLINE | ID: mdl-20655035

ABSTRACT

Copy number variants and indels in 251 families with evidence of X-linked intellectual disability (XLID) were investigated by array comparative genomic hybridization on a high-density oligonucleotide X chromosome array platform. We identified pathogenic copy number variants in 10% of families, with mutations ranging from 2 kb to 11 Mb in size. The challenge of assessing causality was facilitated by prior knowledge of XLID-associated genes and the ability to test for cosegregation of variants with disease through extended pedigrees. Fine-scale analysis of rare variants in XLID families leads us to propose four additional genes, PTCHD1, WDR13, FAAH2, and GSPT2, as candidates for XLID causation and the identification of further deletions and duplications affecting X chromosome genes but without apparent disease consequences. Breakpoints of pathogenic variants were characterized to provide insight into the underlying mutational mechanisms and indicated a predominance of mitotic rather than meiotic events. By effectively bridging the gap between karyotype-level investigations and X chromosome exon resequencing, this study informs discussion of alternative mutational mechanisms, such as noncoding variants and non-X-linked disease, which might explain the shortfall of mutation yield in the well-characterized International Genetics of Learning Disability (IGOLD) cohort, where currently disease remains unexplained in two-thirds of families.


Subject(s)
Chromosomes, Human, X/genetics , DNA Copy Number Variations/genetics , INDEL Mutation/genetics , Intellectual Disability/genetics , Chromosome Breakage , Chromosome Segregation/genetics , Cohort Studies , Disease/genetics , Female , Gene Rearrangement/genetics , Genes, X-Linked/genetics , Humans , Male , Oligonucleotide Array Sequence Analysis , Pedigree , Reproducibility of Results , Retroelements/genetics , Sequence Deletion/genetics
3.
Am J Med Genet A ; 152A(3): 638-45, 2010 Mar.
Article in English | MEDLINE | ID: mdl-20186789

ABSTRACT

ZNF630 is a member of the primate-specific Xp11 zinc finger gene cluster that consists of six closely related genes, of which ZNF41, ZNF81, and ZNF674 have been shown to be involved in mental retardation. This suggests that mutations of ZNF630 might influence cognitive function. Here, we detected 12 ZNF630 deletions in a total of 1,562 male patients with mental retardation from Brazil, USA, Australia, and Europe. The breakpoints were analyzed in 10 families, and in all cases they were located within two segmental duplications that share more than 99% sequence identity, indicating that the deletions resulted from non-allelic homologous recombination. In 2,121 healthy male controls, 10 ZNF630 deletions were identified. In total, there was a 1.6-fold higher frequency of this deletion in males with mental retardation as compared to controls, but this increase was not statistically significant (P-value = 0.174). Conversely, a 1.9-fold lower frequency of ZNF630 duplications was observed in patients, which was not significant either (P-value = 0.163). These data do not show that ZNF630 deletions or duplications are associated with mental retardation.


Subject(s)
Chromosomes, Human, X/genetics , Gene Deletion , Intellectual Disability/genetics , Repressor Proteins/genetics , Case-Control Studies , Chromosome Mapping , Cohort Studies , Comparative Genomic Hybridization , Female , Gene Dosage , Gene Duplication , Humans , Male , Mental Retardation, X-Linked/genetics , Pedigree , Phenotype , Recombination, Genetic
4.
Science ; 313(5789): 963-6, 2006 Aug 18.
Article in English | MEDLINE | ID: mdl-16917061

ABSTRACT

To understand evolutionary paths connecting diverse biological forms, we defined a three-dimensional genotypic space separating two flower color morphs of Antirrhinum. A hybrid zone between morphs showed a steep cline specifically at genes controlling flower color differences, indicating that these loci are under selection. Antirrhinum species with diverse floral phenotypes formed a U-shaped cloud within the genotypic space. We propose that this cloud defines an evolutionary path that allows flower color to evolve while circumventing less-adaptive regions. Hybridization between morphs located in different arms of the U-shaped path yields low-fitness genotypes, accounting for the observed steep clines at hybrid zones.


Subject(s)
Antirrhinum/genetics , Biological Evolution , Flowers/genetics , Genetic Speciation , Pigmentation/genetics , Adaptation, Biological , Alleles , Antirrhinum/classification , Base Sequence , Crosses, Genetic , Gene Flow , Gene Frequency , Genes, Plant , Genotype , Haplotypes , Hybridization, Genetic , Models, Genetic , Molecular Sequence Data , Phenotype , Phylogeny , Pigments, Biological/genetics , Principal Component Analysis , Selection, Genetic
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