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2.
Fluids Barriers CNS ; 14(1): 31, 2017 Nov 07.
Article in English | MEDLINE | ID: mdl-29110676

ABSTRACT

This is a report on the CNS barrier congress held in London, UK, March 22-23rd 2017 and sponsored by Kisaco Research Ltd. The two 1-day sessions were chaired by John Greenwood and Margareta Hammarlund-Udenaes, respectively, and each session ended with a discussion led by the chair. Speakers consisted of invited academic researchers studying the brain barriers in relation to neurological diseases and industry researchers studying new methods to deliver therapeutics to treat neurological diseases. We include here brief reports from the speakers.


Subject(s)
Blood-Brain Barrier , Nervous System Diseases/drug therapy , Animals , Central Nervous System , Humans
3.
Biotechnol Biofuels ; 10: 224, 2017.
Article in English | MEDLINE | ID: mdl-28932265

ABSTRACT

BACKGROUND: Plant lignocellulosic biomass can be a source of fermentable sugars for the production of second generation biofuels and biochemicals. The recalcitrance of this plant material is one of the major obstacles in its conversion into sugars. Biomass is primarily composed of secondary cell walls, which is made of cellulose, hemicelluloses and lignin. Xylan, a hemicellulose, binds to the cellulose microfibril and is hypothesised to form an interface between lignin and cellulose. Both softwood and hardwood xylan carry glucuronic acid side branches. As xylan branching may be important for biomass recalcitrance and softwood is an abundant, non-food competing, source of biomass it is important to investigate how conifer xylan is synthesised. RESULTS: Here, we show using Arabidopsis gux mutant biomass that removal of glucuronosyl substitutions of xylan can allow 30% more glucose and over 700% more xylose to be released during saccharification. Ethanol yields obtained through enzymatic saccharification and fermentation of gux biomass were double those obtained for non-mutant material. Our analysis of additional xylan branching mutants demonstrates that absence of GlcA is unique in conferring the reduced recalcitrance phenotype. As in hardwoods, conifer xylan is branched with GlcA. We use transcriptomic analysis to identify conifer enzymes that might be responsible for addition of GlcA branches onto xylan in industrially important softwood. Using a combination of in vitro and in vivo activity assays, we demonstrate that a white spruce (Picea glauca) gene, PgGUX, encodes an active glucuronosyl transferase. Glucuronic acid introduced by PgGUX reduces the sugar release of Arabidopsis gux mutant biomass to wild-type levels indicating that it can fulfil the same biological function as native glucuronosylation. CONCLUSION: Removal of glucuronic acid from xylan results in the largest increase in release of fermentable sugars from Arabidopsis plants that grow to the wild-type size. Additionally, plant material used in this work did not undergo any chemical pretreatment, and thus increased monosaccharide release from gux biomass can be achieved without the use of environmentally hazardous chemical pretreatment procedures. Therefore, the identification of a gymnosperm enzyme, likely to be responsible for softwood xylan glucuronosylation, provides a mutagenesis target for genetically improved forestry trees.

4.
Development ; 143(8): 1271-83, 2016 Apr 15.
Article in English | MEDLINE | ID: mdl-26952987

ABSTRACT

Dynamic control of gene expression is essential for the development of a totipotent zygote into an embryo with defined cell lineages. The accessibility of genes responsible for cell specification to transcriptional machinery is dependent on chromatin remodelling complexes such as the SWI\SNF (BAF) complex. However, the role of the BAF complex in early mouse development has remained unclear. Here, we demonstrate that BAF155, a major BAF complex subunit, regulates the assembly of the BAF complex in vivo and regulates lineage specification of the mouse blastocyst. We find that associations of BAF155 with other BAF complex subunits become enriched in extra-embryonic lineages just prior to implantation. This enrichment is attributed to decreased mobility of BAF155 in extra-embryonic compared with embryonic lineages. Downregulation of BAF155 leads to increased expression of the pluripotency marker Nanog and its ectopic expression in extra-embryonic lineages, whereas upregulation of BAF155 leads to the upregulation of differentiation markers. Finally, we show that the arginine methyltransferase CARM1 methylates BAF155, which differentially influences assembly of the BAF complex between the lineages and the expression of pluripotency markers. Together, our results indicate a novel role of BAF-dependent chromatin remodelling in mouse development via regulation of lineage specification.


Subject(s)
Cell Lineage/genetics , Embryonic Development/genetics , Epigenesis, Genetic , Transcription Factors/physiology , Animals , Blastocyst/cytology , Chromatin Assembly and Disassembly , Female , Gene Expression , Gene Expression Regulation, Developmental , Humans , Male , Methylation , Mice , Mice, Inbred C57BL , Mice, Inbred CBA , Protein-Arginine N-Methyltransferases/metabolism , Transcription Factors/genetics
5.
Dev Biol ; 398(2): 147-52, 2015 Feb 15.
Article in English | MEDLINE | ID: mdl-25512302

ABSTRACT

The first lineage segregation in the mouse embryo generates the inner cell mass (ICM), which gives rise to the pluripotent epiblast and therefore the future embryo, and the trophectoderm (TE), which will build the placenta. The TE lineage depends on the transcription factor Cdx2. However, when Cdx2 first starts to act remains unclear. Embryos with zygotic deletion of Cdx2 develop normally until the late blastocyst stage leading to the conclusion that Cdx2 is important for the maintenance but not specification of the TE. In contrast, down-regulation of Cdx2 transcripts from the early embryo stage results in defects in TE specification before the blastocyst stage. Here, to unambiguously address at which developmental stage Cdx2 becomes first required, we genetically deleted Cdx2 from the oocyte stage using a Zp3-Cre/loxP strategy. Careful assessment of a large cohort of Cdx2 maternal-zygotic null embryos, all individually filmed, examined and genotyped, reveals an earlier lethal phenotype than observed in Cdx2 zygotic null embryos that develop until the late blastocyst stage. The developmental failure of Cdx2 maternal-zygotic null embryos is associated with cell death and failure of TE specification, starting at the morula stage. These results indicate that Cdx2 is important for the correct specification of TE from the morula stage onwards and that both maternal and zygotic pools of Cdx2 are required for correct pre-implantation embryogenesis.


Subject(s)
Blastocyst/cytology , Gene Knockout Techniques , Homeodomain Proteins/metabolism , Morula/cytology , Transcription Factors/metabolism , Zygote/metabolism , Animals , Blastocyst/metabolism , Body Patterning , Breeding , CDX2 Transcription Factor , Cell Death , Ectoderm/cytology , Ectoderm/metabolism , Embryonic Development , Female , Male , Mice , Morula/metabolism , Transcription Factors/deficiency , Zygote/cytology
6.
Nat Commun ; 5: 5667, 2014 Dec 16.
Article in English | MEDLINE | ID: mdl-25514175

ABSTRACT

Pre-implantation development requires the specification and organization of embryonic and extra-embryonic lineages. The separation of these lineages takes place when asymmetric divisions generate inside and outside cells that differ in polarity, position and fate. Here we assess the global transcriptional identities of these precursor cells to gain insight into the molecular mechanisms regulating lineage segregation. Unexpectedly, this reveals that complementary components of the bone morphogenetic protein (BMP) signalling pathway are already differentially expressed after the first wave of asymmetric divisions. We investigate the role of BMP signalling by expressing dominant negative forms of Smad4 and Bmpr2, by downregulating the pathway using RNA interference against BMP ligands and by applying three different BMP inhibitors at distinct stages. This reveals that BMP signalling regulates the correct development of both extra-embryonic lineages, primitive endoderm and trophectoderm, but not the embryonic lineage, before implantation. Together, these findings indicate multiple roles of BMP signalling in the early mouse embryo.


Subject(s)
Bone Morphogenetic Protein 4/metabolism , Bone Morphogenetic Protein 7/metabolism , Bone Morphogenetic Protein Receptors, Type II/metabolism , Cell Lineage , Mice/embryology , Signal Transduction , Animals , Bone Morphogenetic Protein 4/genetics , Bone Morphogenetic Protein 7/genetics , Bone Morphogenetic Protein Receptors, Type II/genetics , Embryo Implantation , Endoderm/metabolism , Female , Gene Expression Regulation, Developmental , Male , Mice/genetics , Mice/metabolism , Mice, Inbred C57BL , Mice, Inbred CBA , Smad4 Protein/genetics , Smad4 Protein/metabolism
7.
EMBO J ; 33(14): 1582-98, 2014 Jul 17.
Article in English | MEDLINE | ID: mdl-24920579

ABSTRACT

We have identified a new function for the dynein adaptor Bicaudal D homolog 1 (BICD1) by screening a siRNA library for genes affecting the dynamics of neurotrophin receptor-containing endosomes in motor neurons (MNs). Depleting BICD1 increased the intracellular accumulation of brain-derived neurotrophic factor (BDNF)-activated TrkB and p75 neurotrophin receptor (p75(NTR)) by disrupting the endosomal sorting, reducing lysosomal degradation and increasing the co-localisation of these neurotrophin receptors with retromer-associated sorting nexin 1. The resulting re-routing of active receptors increased their recycling to the plasma membrane and altered the repertoire of signalling-competent TrkB isoforms and p75(NTR) available for ligand binding on the neuronal surface. This resulted in attenuated, but more sustained, AKT activation in response to BDNF stimulation. These data, together with our observation that Bicd1 expression is restricted to the developing nervous system when neurotrophin receptor expression peaks, indicate that BICD1 regulates neurotrophin signalling by modulating the endosomal sorting of internalised ligand-activated receptors.


Subject(s)
Adaptor Proteins, Signal Transducing/metabolism , Cytoskeletal Proteins/metabolism , Endosomes/metabolism , Models, Biological , Motor Neurons/metabolism , Receptors, Nerve Growth Factor/metabolism , Signal Transduction/physiology , Adaptor Proteins, Signal Transducing/genetics , Animals , Blotting, Western , Brain-Derived Neurotrophic Factor/metabolism , Cell Line , Cytoskeletal Proteins/genetics , Fluorescent Antibody Technique , Immunohistochemistry , Luminescent Proteins , Mice , Microscopy, Electron, Transmission , Protein Transport/physiology , RNA, Small Interfering/genetics , Real-Time Polymerase Chain Reaction , Signal Transduction/genetics , Red Fluorescent Protein
8.
Matrix Biol ; 35: 25-33, 2014 Apr.
Article in English | MEDLINE | ID: mdl-24128412

ABSTRACT

Heparan sulfates are complex sulfated molecules found in abundance at cell surfaces and in the extracellular matrix. They bind to and influence the activity of a variety of molecules like growth factors, proteases and morphogens and are thus involved in various cell-cell and cell-matrix interactions. The mammalian EXT proteins have glycosyltransferase activities relevant for HS chain polymerization, however their exact role in this process is still confusing. In this review, we summarize current knowledge about the biochemical activities and some proposed functions of the members of the EXT protein family and their roles in human disease.


Subject(s)
Extracellular Matrix/metabolism , Glycosyltransferases/metabolism , Heparitin Sulfate/metabolism , Models, Molecular , Multigene Family/physiology , N-Acetylglucosaminyltransferases/deficiency , N-Acetylglucosaminyltransferases/physiology , Amino Acid Sequence , Base Sequence , Exostoses, Multiple Hereditary/genetics , Humans , Molecular Sequence Data , N-Acetylglucosaminyltransferases/genetics , N-Acetylglucosaminyltransferases/metabolism , Phylogeny , Polymerization , Sequence Alignment , Sequence Analysis, DNA , Species Specificity
9.
Cell Rep ; 3(2): 442-57, 2013 Feb 21.
Article in English | MEDLINE | ID: mdl-23375373

ABSTRACT

A longstanding question in mammalian development is whether the divisions that segregate pluripotent progenitor cells for the future embryo from cells that differentiate into extraembryonic structures are asymmetric in cell-fate instructions. The transcription factor Cdx2 plays a key role in the first cell-fate decision. Here, using live-embryo imaging, we show that localization of Cdx2 transcripts becomes asymmetric during development, preceding cell lineage segregation. Cdx2 transcripts preferentially localize apically at the late eight-cell stage and become inherited asymmetrically during divisions that set apart pluripotent and differentiating cells. Asymmetric localization depends on a cis element within the coding region of Cdx2 and requires cell polarization as well as intact microtubule and actin cytoskeletons. Failure to enrich Cdx2 transcripts apically results in a significant decrease in the number of pluripotent cells. We discuss how the asymmetric localization and segregation of Cdx2 transcripts could contribute to multiple mechanisms that establish different cell fates in the mouse embryo.


Subject(s)
Homeodomain Proteins/analysis , Trans-Activators/analysis , Animals , CDX2 Transcription Factor , Cell Lineage , Cell Polarity , Cells, Cultured , Cytoskeleton , Embryo, Mammalian/metabolism , Embryonic Development , Homeodomain Proteins/genetics , Homeodomain Proteins/metabolism , In Situ Hybridization, Fluorescence , Mice , Mice, Inbred C57BL , Mice, Inbred CBA , RNA, Messenger/metabolism , Trans-Activators/genetics , Trans-Activators/metabolism
10.
Antioxid Redox Signal ; 12(2): 249-59, 2010 Feb.
Article in English | MEDLINE | ID: mdl-19650711

ABSTRACT

With the evolution of fish, systems appeared for the disposal of the hemoglobin (Hb) that was inevitably released from erythrocytes. Thus, a plasma protein that bound free Hb with great affinity, haptoglobin (Hp), evolved from a protease of the innate immune system. In parallel, other proteins appeared (for example, hemopexin and alpha(1)-microglobulin), which bound and mediated the removal of free heme groups. Remarkably, Hp later disappeared in some vertebrate lineages, suggesting that it could also be disadvantageous. In the avian lineage, a soluble protein evolved, possibly from a scavenger receptor, which in some birds seems to have replaced Hp. Among mammals, multimeric forms of Hp appeared independently at two discrete times, suggesting that this form of the protein confers an advantage on the bearer, possibly by improving resistance to infection.


Subject(s)
Evolution, Molecular , Haptoglobins/metabolism , Hemoglobins/metabolism , Animals , Birds , Fishes , Haptoglobins/chemistry , Haptoglobins/genetics , Humans , Mammals , Models, Biological , Protein Binding
11.
J Mol Evol ; 65(4): 373-9, 2007 Oct.
Article in English | MEDLINE | ID: mdl-17922076

ABSTRACT

Haptoglobin (Hp) is a hemoglobin-binding plasma protein consisting of two types of chains, called alpha and beta, which originate from a common polypeptide. In humans, but not in other mammals, Hp has been shown to occur in two allelic forms, Hp1 and Hp2, which differ in the length of the alpha-chain. The longer alpha-chain (in Hp2) seems to have arisen by an internal duplication of a gene segment coding for almost the entire alpha-chain of Hp1. In this article we show that Hp of cow (Bos taurus) contains an alpha-chain, the structure of which is similar to that of the human Hp2 alpha-chain. Furthermore, comparison of the structure of bovine Hp and human Hp2 suggests that the bovine gene arose by a duplication of the gene segment homologous to that duplicated in human Hp2. However, a phylogenetic analysis indicates that the two genes were formed independently. The evolutionary pressure that has led to the fixation of the Hps with a longer alpha-chain is not known.


Subject(s)
Evolution, Molecular , Gene Duplication , Haptoglobins/genetics , Amino Acid Sequence , Animals , Cattle , Haptoglobins/chemistry , Humans , Molecular Sequence Data , Sequence Homology, Amino Acid
12.
Proc Natl Acad Sci U S A ; 103(11): 4168-73, 2006 Mar 14.
Article in English | MEDLINE | ID: mdl-16537503

ABSTRACT

Hemoglobin (Hb) released from erythrocytes may cause oxidation of lipids and proteins. Haptoglobin (Hp), which occurs in the plasma of all mammals, binds free Hb and inhibits its oxidative activity. It is not known whether this protective protein also exists in lower vertebrates. By analyzing available genomic sequences, we have found that bony fish, but not more primitive animals, have a gene coding for a protein homologous to mammalian Hp. Furthermore, we show that this protein is present in the plasma of Japanese pufferfish (Takifugu rubripes) and that it binds Hb. These results, together with a phylogenetic analysis, suggest that Hp evolved from a complement-associated protein (mannose-binding lectin-associated serine proteinase, MASP), with the emergence of fish. Surprisingly, we found that both chicken (Gallus gallus) and the Western clawed frog (Xenopus tropicalis) lack the Hp gene. In chicken plasma, however, we identified a different type of Hb-binding protein, PIT54, which has been reported to be a potent antioxidant. PIT54 is a soluble member of the family of scavenger receptor cysteine-rich proteins, and we found that its gene exists only in birds. We also show that the plasma of ostrich (Strutio camelus), a primitive bird, contains both PIT54 and Hp. Collectively, our data suggest that PIT54 has successively taken over the function of Hp during the evolution of the avian lineage and has completely replaced the latter protein in chicken.


Subject(s)
Evolution, Molecular , Haptoglobins/genetics , Amino Acid Sequence , Animals , Birds/genetics , Chickens/genetics , Chromosome Mapping , Fishes/genetics , Humans , Invertebrates/genetics , Mammals/genetics , Molecular Sequence Data , Phylogeny , Sequence Homology, Amino Acid , Species Specificity , Xenopus/genetics
13.
Proc Natl Acad Sci U S A ; 101(40): 14390-5, 2004 Oct 05.
Article in English | MEDLINE | ID: mdl-15385675

ABSTRACT

Many secretory proteins are synthesized as proforms that become biologically active through a proteolytic cleavage in the trans-Golgi complex or at a later stage in the secretory pathway. Haptoglobin (Hp) is unusual in that it is cleaved in the endoplasmic reticulum before it enters the Golgi. Here, we present evidence that the recently discovered complement C1r-like protein (C1r-LP) mediates this cleavage. C1r-LP has not previously been shown to possess proteolytic activity, despite its homology to trypsin-like Ser proteinases. We demonstrate that coexpression of the proform of Hp (proHp) and C1r-LP in COS-1 cells effected cleavage of proHp in the endoplasmic reticulum. This cleavage depended on proteolytic activity of C1r-LP because mutation of the putative active-site Ser residue abolished the reaction. Furthermore, incubation of affinity-purified C1r-LP and proHp led to the cleavage of the latter protein. ProHp appeared to be cleaved at the expected site because substitution of Gly for Arg-161 blocked the reaction. C1r-LP showed specificity for proHp, in that it did not cleave the proform of complement C1s, a protein similar to Hp particularly around the cleavage site. C1r-LP accounts for at least part of the endogenous proHp-cleavage activity because suppression of the C1r-LP expression by RNA interference reduced the cleavage of proHp by up to 45% in the cells of a human hepatoma cell line (HepG2).


Subject(s)
Complement C1r/metabolism , Endoplasmic Reticulum/metabolism , Haptoglobins/metabolism , Protein Precursors/metabolism , Amino Acid Sequence , Animals , Base Sequence , CHO Cells , COS Cells , Cell Line , Complement C1r/chemistry , Complement C1r/genetics , Complement C1s/chemistry , Complement C1s/genetics , Complement C1s/metabolism , Cricetinae , DNA, Complementary/genetics , Haptoglobins/chemistry , Haptoglobins/genetics , Humans , Hydrogen-Ion Concentration , Molecular Sequence Data , Protein Precursors/chemistry , Protein Precursors/genetics , Protein Processing, Post-Translational , RNA, Small Interfering/genetics , Rats , Recombinant Proteins/chemistry , Recombinant Proteins/genetics , Recombinant Proteins/metabolism , Sequence Homology, Amino Acid
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