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1.
IEEE Trans Nanobioscience ; 18(2): 156-169, 2019 04.
Article in English | MEDLINE | ID: mdl-30703034

ABSTRACT

The possibility to guide and control magnetic nanoparticles in a non-invasive manner has spawned various applications in biotechnology, such as targeted drug delivery and sensing of biological substances. These applications are facilitated by the engineering of the size, selective chemical reactivity, and general chemical composition of the employed particles. Motivated by their widespread use and favorable properties, in this paper, we provide a theoretical study of the potential benefits of magnetic nanoparticles for the design of molecular communication systems. In particular, we consider a magnetic nanoparticle-based communication in a microfluidic channel where an external magnetic field is employed to attract the information-carrying particles to the receiver. We show that the particle transport affected by the Brownian motion, fluid flow, and an external magnetic field can be mathematically modeled as diffusion with drift. Thereby, we reveal that the key parameters determining the magnetic force are the particle size and the magnetic field gradient. Moreover, we derive an analytical expression for the channel impulse response, which is used to evaluate the potential gain in the expected number of observed nanoparticles due to the magnetic field. Furthermore, adopting the symbol error rate as performance metric, we show that using magnetic nanoparticles can enable a reliable communication in the presence of disruptive fluid flow. The numerical results obtained by the particle-based simulation validate the accuracy of the derived analytical expressions.


Subject(s)
Computers, Molecular , Magnetite Nanoparticles , Models, Theoretical , Magnetic Fields , Magnetic Phenomena , Microfluidics , Nanotechnology , Particle Size
2.
IEEE Trans Nanobioscience ; 18(2): 103-116, 2019 04.
Article in English | MEDLINE | ID: mdl-30530333

ABSTRACT

In this paper, we propose using mobile nanosensors (MNSs) for early stage anomaly detection. For concreteness, we focus on the detection of cancer cells located in a particular region of a blood vessel. These cancer cells produce and emit special molecules, so-called biomarkers, which are symptomatic for the presence of anomaly, into the cardiovascular system. Detection of cancer biomarkers with conventional blood tests is difficult in the early stages of a cancer due to the very low concentration of the biomarkers in the samples taken. However, close to the cancer cells, the concentration of the cancer biomarkers is high. Hence, detection is possible if a sensor with the ability to detect these biomarkers is placed in the vicinity of the cancer cells. Therefore, in this paper, we study the use of MNSs that are injected at a suitable injection site and can move through the blood vessels of the cardiovascular system, which potentially contain cancer cells. These MNSs can be activated by the biomarkers close to the cancer cells, where the biomarker concentration is sufficiently high. Eventually, the MNSs are collected by a fusion center (FC), where their activation levels are read and exploited to declare the presence of anomaly. We analytically derive the biomarker concentration in a network of interconnected blood vessels as well as the probability mass function of the MNSs' activation levels and validate the obtained results via particle-based simulations. Then, we derive the optimal decision rule for the FC regarding the presence of anomaly assuming that the entire network is known at the FC. Finally, for the FC, we propose a simple sum detector that does not require knowledge of the network topology. Our simulations reveal that while the optimal detector achieves a higher performance than the sum detector, both proposed detectors significantly outperform a benchmark scheme that uses fixed nanosensors at the FC.


Subject(s)
Biomarkers, Tumor/blood , Biosensing Techniques , Neoplasms/diagnosis , Blood Vessels , Humans , Injections , Models, Biological , Neoplasms/blood
3.
IEEE Trans Nanobioscience ; 18(1): 31-42, 2019 01.
Article in English | MEDLINE | ID: mdl-30235144

ABSTRACT

Although many exciting applications of molecular communication (MC) systems are envisioned to be at microscale, the MC testbeds reported in the literature so far are mostly at macroscale. This may partially be due to the fact that controlling an MC system at microscale is challenging. To link the macroworld to the microworld, we propose and demonstrate a biological signal conversion interface that can also be seen as a microscale modulator. In particular, the proposed interface transduces an optical signal, which is controlled using a light-emitting diode, into a chemical signal by changing the pH of the environment. The modulator is realized using Escherichia coli bacteria as microscale entity expressing the light-driven proton pump gloeorhodopsin from Gloeobacter violaceus. Upon inducing external light stimuli, these bacteria locally change their surrounding pH level by exporting protons into the environment. To verify the effectiveness of the proposed optical-to-chemical signal converter, we analyze the pH signal measured by a pH sensor, which serves as a receiver. We develop an analytical parametric model for the induced chemical signal as a function of the applied optical signal. Using this model, we derive a training-based channel estimator that estimates the parameters of the proposed model to fit the measurement data based on a least square error approach. We further derive the optimal maximum likelihood detector and a suboptimal low-complexity detector to recover the transmitted data from the measured received signal. It is shown that the proposed parametric model is in good agreement with the measurement data. Moreover, for an example scenario, we show that the proposed setup is able to successfully convert an optical signal representing a sequence of binary symbols into a chemical signal with a bit rate of 1 bit/min and recover the transmitted data from the chemical signal using the proposed estimation and detection schemes. The proposed modulator may form the basis for future MC testbeds and applications at microscale.


Subject(s)
Computers, Molecular , Escherichia coli , Models, Biological , Models, Chemical , Bacteriorhodopsins/chemistry , Bacteriorhodopsins/metabolism , Escherichia coli/chemistry , Escherichia coli/metabolism , Hydrogen-Ion Concentration , Proton Pumps , Signal Processing, Computer-Assisted , Signal Transduction/physiology
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