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1.
PLoS One ; 11(4): e0152984, 2016.
Article in English | MEDLINE | ID: mdl-27054571

ABSTRACT

Variation in genes coding for nicotinic acetylcholine receptor (nAChR) subunits affect cognitive processes and may contribute to the genetic architecture of neuropsychiatric disorders. Single nucleotide polymorphisms (SNPs) in the CHRNA4 gene that codes for the alpha4 subunit of alpha4/beta2-containing receptors have previously been implicated in aspects of (mostly visual) attention and smoking-related behavioral measures. Here we investigated the effects of six synonymous but functional CHRNA4 exon 5 SNPs on the N100 event-related potential (ERP), an electrophysiological endophenotype elicited by a standard auditory oddball. A total of N = 1,705 subjects randomly selected from the general population were studied with electroencephalography (EEG) as part of the German Multicenter Study on nicotine addiction. Two of the six variants, rs1044396 and neighboring rs1044397, were significantly associated with N100 amplitude. This effect was pronounced in females where we also observed an effect on reaction time. Sequencing of the complete exon 5 region in the population sample excluded the existence of additional/functional variants that may be responsible for the observed effects. This is the first large-scale population-based study investigation the effects of CHRNA4 SNPs on brain activity measures related to stimulus processing and attention. Our results provide further evidence that common synonymous CHRNA4 exon 5 SNPs affect cognitive processes and suggest that they also play a role in the auditory system. As N100 amplitude reduction is considered a schizophrenia-related endophenotype the SNPs studied here may also be associated with schizophrenia outcome measures.


Subject(s)
Polymorphism, Single Nucleotide/genetics , Receptors, Nicotinic/genetics , Smoking/adverse effects , Tobacco Use Disorder/genetics , Adult , Electrophysiological Phenomena , Endophenotypes , Female , Germany/epidemiology , Humans , Male , Neuroimaging , Tobacco Use Disorder/epidemiology , Tobacco Use Disorder/pathology
2.
Mol Psychiatry ; 17(9): 906-17, 2012 Sep.
Article in English | MEDLINE | ID: mdl-21747397

ABSTRACT

Recent molecular studies have implicated common alleles of small to moderate effect and rare alleles with larger effect sizes in the genetic architecture of schizophrenia (SCZ). It is expected that the reliable detection of risk variants with very small effect sizes can only be achieved through the recruitment of very large samples of patients and controls (that is tens of thousands), or large, potentially more homogeneous samples that have been recruited from confined geographical areas using identical diagnostic criteria. Applying the latter strategy, we performed a genome-wide association study (GWAS) of 1169 clinically well characterized and ethnically homogeneous SCZ patients from a confined area of Western Europe (464 from Germany, 705 from The Netherlands) and 3714 ethnically matched controls (1272 and 2442, respectively). In a subsequent follow-up study of our top GWAS results, we included an additional 2569 SCZ patients and 4088 controls (from Germany, The Netherlands and Denmark). Genetic variation in a region on chromosome 11 that contains the candidate genes AMBRA1, DGKZ, CHRM4 and MDK was significantly associated with SCZ in the combined sample (n=11 540; P=3.89 × 10(-9), odds ratio (OR)=1.25). This finding was replicated in 23 206 independent samples of European ancestry (P=0.0029, OR=1.11). In a subsequent imaging genetics study, healthy carriers of the risk allele exhibited altered activation in the cingulate cortex during a cognitive control task. The area of interest is a critical interface between emotion regulation and cognition that is structurally and functionally abnormal in SCZ and bipolar disorder.


Subject(s)
Chromosomes, Human, Pair 11/genetics , Functional Neuroimaging/psychology , Genetic Predisposition to Disease/genetics , Psychomotor Performance/physiology , Schizophrenia/genetics , Schizophrenic Psychology , White People/genetics , Case-Control Studies , Europe , Female , Functional Neuroimaging/methods , Genome-Wide Association Study/methods , Genome-Wide Association Study/statistics & numerical data , Gyrus Cinguli/physiology , Humans , Male , Polymorphism, Single Nucleotide , Schizophrenia/physiopathology
3.
Tissue Antigens ; 77(4): 333-7, 2011 Apr.
Article in English | MEDLINE | ID: mdl-21388357

ABSTRACT

Sarcoidosis is a systematic granulomatous disorder. Genetic susceptibility could play a central role in the disease development and progression. In this study, we investigated whether caspase recruitment domain 15 (CARD15) gene haplotypes are associated with the onset or the clinical course of sarcoidosis. Three hundred Caucasian sarcoidosis patients and 381 matched controls were included. Eight haplotype-tagging single nucleotide polymorphisms (SNPs) in the CARD15 gene were examined by mass spectrometry-based SNP genotyping. By haplotype analysis, mutations located in between tested SNPs can also be identified. Therefore, we can conclude that there is no association between the CARD15 gene and the development or a special phenotype of sarcoidosis in our cohort.


Subject(s)
Haplotypes/genetics , Mutation , Nod2 Signaling Adaptor Protein , Polymorphism, Single Nucleotide , Sarcoidosis/genetics , Adult , Aged , Cohort Studies , Female , Genetic Predisposition to Disease , Humans , Male , Middle Aged , Sarcoidosis/pathology , White People/genetics
4.
Int J Psychophysiol ; 77(2): 166-75, 2010 Aug.
Article in English | MEDLINE | ID: mdl-20538020

ABSTRACT

A better understanding of the factors underlying habitual tobacco smoking may further new strategies to go about this major health problem. The P300 event-related potential (ERP) has emerged as a valuable (endo)phenotype in neuropsychiatric research. Previous studies suggested the P300 ERP to be reduced in smokers. The main purpose of the present study was to provide an in-depth description of smoking-related behavioral, biological and electrophysiological phenotypes with an emphasis on the P300 ERP and its mutual relationship with other smoking-related parameters. In this case-control study N=1318 participants (smokers and never-smoking controls) were investigated at 6 German academic institutions. Study participants were randomly selected from the general population. Subjects with mental disorders including alcoholism and drug abuse were excluded. The main outcome measure was the P300 global field power (GFP). We found a lower P300 GFP in current smokers compared to never-smoking controls. Furthermore a correlation between measures of smoking severity and P300 GFP reduction was found. Non-addicted smokers exhibited normal P300 ERP measures. This study provides further evidence that the P300 ERP is reduced in current smokers even in the absence of potentially confounding psychiatric comorbidity. Thus, P300 amplitude reduction clearly is part of the electrophysiological phenotype of smokers. Our results provide the phenotypical groundwork for future multidimensional analyses of genotype-phenotype relationships in the field of smoking and nicotine dependence.


Subject(s)
Event-Related Potentials, P300/physiology , Population Surveillance , Smoking/epidemiology , Smoking/physiopathology , Adult , Case-Control Studies , Electroencephalography/methods , Female , Humans , Male , Middle Aged , Population Surveillance/methods , Smoking/genetics , Young Adult
5.
J Med Genet ; 46(11): 736-44, 2009 Nov.
Article in English | MEDLINE | ID: mdl-19525279

ABSTRACT

BACKGROUND: Psoriasis is a genetically complex, chronic inflammatory skin disease. The authors have previously identified a susceptibility locus on chromosome 19p13 (PSORS6). METHODS AND RESULTS: In a follow-up linkage disequilibrium (LD) study in an independent family based cohort, the authors found evidence for association to a newly discovered microsatellite at this locus (D19SPS21, p<5.3x10(-5)). An LD based association scan in 300 trios revealed association to several single, single nucleotide polymorphisms (SNPs) in one LD block. When the authors stratified this cohort for carrying the PSORS1 risk allele at the HLA-C locus, evidence for association became much stronger at single SNP and haplotype levels (p values between 1.0x10(-4) and 8.0x10(-4)). In a replication study of 1114 patients and 937 control individuals, evidence for association was also observed after stratification to the PSORS1 risk allele. In both study groups, logistic regression showed evidence for interaction between the risk alleles at PSORS1 and PSORS6. Best p values for rs12459358 in both study groups remained significant after correction for multiple testing. The associated LD block did not comprise any known genes. Interestingly, an adjacent gene, MUC16, coding for a large glycosylated protein expressed in epithelia and of unknown function, could be shown to be also expressed in tissues relevant for pathogenesis of psoriasis such as skin and thymus. Immunohistochemical analyses of skin revealed focal staining for MUC16 in suprabasal epidermal cells. Further functional studies are required to clarify its potential role in psoriasis and identify the causal variant(s) at this locus. CONCLUSION: The data establish PSORS6 as a confirmed psoriasis susceptibility locus showing interaction with PSORS1.


Subject(s)
Proteins/genetics , Psoriasis/genetics , Adolescent , Adult , Age of Onset , CA-125 Antigen/metabolism , Chi-Square Distribution , Gene Frequency , Genetic Predisposition to Disease , Haplotypes , Humans , Immunohistochemistry , Linkage Disequilibrium , Male , Membrane Proteins/metabolism , Microsatellite Repeats , Middle Aged , Proteins/metabolism
6.
Haemophilia ; 14(2): 355-60, 2008 Mar.
Article in English | MEDLINE | ID: mdl-18081831

ABSTRACT

Acquired haemophilia (AH) is an autoimmune disorder characterized by autoantibodies against endogenous factor VIII (FVIII). Half of the patients present with an underlying disease known to cause the FVIII autoantibodies whereas in the other half the disease is of idiopathic nature. Recently, it has been shown that variants of the polymorphic cytotoxic T lymphocyte antigen-4 (CTLA-4) gene are associated with autoimmune diseases and also represent a risk factor for inhibitor formation in inherited haemophilia A. In the present study, we investigated whether CTLA-4 variants also play a role in the pathogenesis of AH. Therefore, we analyzed three single nucleotide polymorphisms (SNPs) of the CTLA-4 gene (-318 C/T, +49 A/G and CT60 A/G) in 57 AH patients and 98 controls. The CTLA-4 + 49 G allele occurred with a significantly higher frequency in patients with AH compared with controls [odds ratio (OR) = 2.17, 95% confidence interval (CI): 1.36-3.48, P = 0.001]. This effect was mainly caused by a higher frequency of the 49 G allele in female patients (OR = 5.1, 95% CI: 1.76-15.02, P = 0.002), whereas in males the frequencies were not significantly different (OR = 1.4, P = 0.5). A higher frequency of the G allele was also observed in the subcohort with AH and underlying autoimmune disease (OR = 3.1, P = 0.04). Our observations of a higher frequency of the CTLA-4 + 49 A/G SNP in AH patients are in concordance with findings in other autoimmune disorders. In conclusion, on the background of the CTLA-4 gene polymorphism, further genetic and/or environmental factors might contribute to and finally trigger the clinical manifestation of AH.


Subject(s)
Antigens, CD/genetics , Antigens, Differentiation/genetics , Hemophilia A/genetics , Polymorphism, Single Nucleotide , Adult , Aged , Aged, 80 and over , Autoantibodies/blood , CTLA-4 Antigen , Case-Control Studies , Factor VIII/immunology , Female , Gene Frequency , Genetic Predisposition to Disease , Genotype , Hemophilia A/immunology , Humans , Male , Middle Aged
7.
Clin Microbiol Infect ; 14(3): 228-34, 2008 Mar.
Article in English | MEDLINE | ID: mdl-18076668

ABSTRACT

Promoter variations in Toll-like receptor genes (n = 7) and genes encoding pathogen recognition and virus entry receptors (n = 7) were screened to detect any association with human cytomegalovirus (hCMV) reactivation and disease in patients following allogeneic stem-cell transplantation. Two single nucleotide polymorphisms (rs735240, G>A; rs2287886, C>T) in the promoter region of the dendritic cell-specific ICAM3-grabbing non-integrin (DC-SIGN) showed a significant association with an increased risk of development of hCMV reactivation and disease. Furthermore, these genetic markers influenced the expression levels of DC-SIGN on immature dendritic cells, as well as the infection efficiency of immature dendritic cells by hCMV, as determined by hCMV immediate-early antigen staining. Screening of patients following allogeneic stem-cell transplantation for the presence of these defined genetic polymorphisms might help to predict the individual risk of hCMV reactivation and disease.


Subject(s)
Cell Adhesion Molecules/genetics , Cytomegalovirus Infections/genetics , Cytomegalovirus/isolation & purification , Lectins, C-Type/genetics , Polymorphism, Single Nucleotide , Promoter Regions, Genetic , Receptors, Cell Surface/genetics , Stem Cell Transplantation/adverse effects , Virus Activation/genetics , Adult , Cytomegalovirus Infections/immunology , Dendritic Cells/immunology , Female , Gene Expression , Genetic Predisposition to Disease , Humans , Male , Middle Aged , Virus Activation/immunology
8.
J Med Genet ; 44(9): 570-8, 2007 Sep.
Article in English | MEDLINE | ID: mdl-17513527

ABSTRACT

BACKGROUND: Age-related hearing impairment (ARHI) is the most common sensory impairment in older people, affecting 50% of those aged 80 years. The proportion of older people is increasing in the general population, and as a consequence, the number of people affected with ARHI is growing. ARHI is a complex disorder, with both environmental and genetic factors contributing to the disease. The first studies to elucidate these genetic factors were recently performed, resulting in the identification of the first two susceptibility genes for ARHI, NAT2 and KCNQ4. METHODS: In the present study, the association between ARHI and polymorphisms in genes that contribute to the defence against reactive oxygen species, including GSTT1, GSTM1 and NAT2, was tested. Samples originated from seven different countries and were combined into two test population samples, the general European population and the Finnish population. Two distinct phenotypes for ARHI were studied, Z(low) and Z(high), representing hearing in the low and high frequencies, respectively. Statistical analysis was performed for single polymorphisms (GSTM1, GSTT1, NAT2*5A, NAT2*6A, and NAT2*7A), haplotypes, and gene-environment and gene-gene interactions. RESULTS: We found an association between ARHI and GSTT1 and GSTM1 in the Finnish population sample, and with NAT2*6A in the general European population sample. The latter finding replicates previously published data. CONCLUSION: As replication is considered the ultimate proof of true associations in the study of complex disorders, this study provides further support for the involvement of NAT2*6A in ARHI.


Subject(s)
Arylamine N-Acetyltransferase/genetics , Hearing Disorders/genetics , Polymorphism, Single Nucleotide , Age of Onset , Aged , Arylamine N-Acetyltransferase/physiology , Environment , Epistasis, Genetic , Europe/epidemiology , Female , Finland/epidemiology , Gene Frequency , Glutathione Transferase/genetics , Glutathione Transferase/physiology , Haplotypes/genetics , Hearing Disorders/epidemiology , Hearing Loss, High-Frequency/epidemiology , Hearing Loss, High-Frequency/genetics , Humans , Male , Middle Aged , Oxidative Stress/genetics
9.
Diabetologia ; 50(7): 1418-22, 2007 Jul.
Article in English | MEDLINE | ID: mdl-17464498

ABSTRACT

AIMS/HYPOTHESIS: The aim was to identify type 2 diabetes susceptibility regions in 250 German families. SUBJECTS AND METHODS: We conducted a genome-wide linkage scan using 439 short tandem repeat polymorphisms at an average resolution of 7.76 +/- 3.80 cM (Marshfield). In an affected-only-design (affected sib pairs), we performed nonparametric multipoint linkage analyses. Conditional analyses were applied where linkage signals were found in the baseline analyses. RESULTS: We identified two loci with nominal evidence for linkage on chromosomes 1p36.13 and 16p12.2 (D1S3669, 37.05 cM, logarithmic odds ratio [LOD] = 1.49, p = 0.004; D16S403, 43.89 cM, LOD = 1.85, p = 0.002). D16S403 crossed the empirically obtained threshold of genome-wide suggestive significance of LOD = 1.51. Positive findings in those regions have been reported by the following other linkage studies on: (1) symptomatic/clinical gall bladder disease with type 2 diabetes in Mexican Americans from the San Antonio Family Diabetes/Gallbladder Study (LOD = 3.7, D1S1597-D1S407, 29.93-33.75 cM); (2) body size-adiposity in another Mexican American population (D1S1597, LOD = 2.53, 29.93 cM); (3) lipid abnormalities (LOD = 3.1, D1S2826-D1S513, 41.92-60.01 cM); and (4) hypertension in Australian sib pairs (LOD = 3.1, D1S2834-D1S2728, 31.02-33.75 cM); as well as (5) a meta-analysis of four European type 2 diabetes-related genome scans (LOD = 1.09, D16S412, 42.81 cM). In linkage analyses conditional on evidence for linkage at D16S403 we identified a LOD increase (Delta LOD) of 1.55 (p = 0.0075) at D17S2180. Similar conditioning on D17S2180 revealed evidence for interaction with D1S3669 (Delta LOD = 1.67, p = 0.0055), D16S403 (Delta LOD = 1.48, p = 0.0091) and another locus on chromosome 1 where several genome scans have reported evidence for linkage ( approximately 200 cM, Delta LOD = 1.60, p = 0.0066). CONCLUSIONS/INTERPRETATION: Our results and the findings of other studies are consistent with the presence of a locus for a complex metabolic syndrome on chromosome 1p36.13.


Subject(s)
Chromosomes, Human, Pair 16 , Chromosomes, Human, Pair 1 , Diabetes Mellitus, Type 2/genetics , Genetic Linkage , Genomics , Metabolic Syndrome/genetics , Chromosome Mapping , Female , Genetic Predisposition to Disease , Genome, Human , Germany , Humans , Male , Odds Ratio , Polymorphism, Genetic
10.
B-ENT ; 3 Suppl 7: 51-60, 2007.
Article in English | MEDLINE | ID: mdl-18225608

ABSTRACT

INTRODUCTION AND AIM: Tinnitus is a common condition affecting approximately 20% of the older population. There is increasing evidence that changes in the central auditory system following cochlear malfunctioning are responsible for tinnitus. To date, few investigators have studied the influence of genetic factors on tinnitus. The present report investigates the presence of a familial effect in tinnitus subjects. METHODS: In a European multicentre study, 198 families were recruited in seven European countries. Each family had at least 3 siblings. Subjects were screened for causes of hearing loss other than presbyacusis by clinical examination and a questionnaire. The presence of tinnitus was evaluated with the question "Nowadays, do you ever get noises in your head or ear (tinnitus) which usually last longer than five minutes". Familial aggregation was tested using three methods: a mixed model approach, calculating familial correlations, and estimating the risk of a subject having tinnitus if the disorder is present in another family member. RESULTS: All methods demonstrated a significant familial effect for tinnitus. The effect persisted after correction for the effect of other risk factors such as hearing loss, gender and age. The size of the familial effect is smaller than that for age-related hearing impairment, with a familial correlation of 0.15. CONCLUSION: The presence of a familial effect for tinnitus opens the door to specific studies that can determine whether this effect is due to a shared familial environment or the involvement of genetic factors. Subsequent association studies may result in the identification of the factors responsible. In addition, more emphasis should be placed on the effect of role models in the treatment of tinnitus.


Subject(s)
Family , Genetic Predisposition to Disease , Tinnitus/genetics , Aged , Europe/epidemiology , Female , Humans , Male , Middle Aged , Prevalence , Risk Factors , Surveys and Questionnaires , Tinnitus/epidemiology
11.
Hum Mutat ; 27(10): 1007-16, 2006 Oct.
Article in English | MEDLINE | ID: mdl-16917933

ABSTRACT

Age-related hearing impairment (ARHI) is the most common sensory impairment among the elderly. It is a complex disorder influenced by genetic as well as environmental factors. SNPs in a candidate susceptibility gene, KCNQ4, were examined in two independent Caucasian populations. Two quantitative trait locus (QTL) values were investigated: Zhigh and Zlow, a measure of high and respectively low frequency hearing loss. In the first population, the statistical analysis of 23 genotyped SNPs spread across KCNQ4 resulted in significant p-values for two SNPs for Zhigh-SNP9 (NT_004511:g.11244177A > T) and SNP15 (NT_004511:g.11257005C > T; NP_004691:p.Ala259Ala), and one SNP for Zlow-SNP12 (NT_004511:g.11249550A > T). The linkage disequilibrium (LD) structure of KCNQ4 was subsequently determined in a 34-kb region surrounding the significant SNPs, resulting in three LD-blocks. LD-block 1 contains SNP9 and covers an area of 5 kb, LD-block 2 measures 5 kb and surrounds SNP13 (NT_004511:g.11253513A > G) to SNP18 (NT_004511:g.11257509G > A; NP_004691:p.Thr293Thr), and LD-block 3 spans 7 kb. Five tag-SNPs of block 1 and 2, and 2 extra SNPs were subsequently genotyped in the second population. Again, several SNPs were positively associated with ARHI: one SNP (SNP18) for the high frequencies and three SNPs (SNP9, SNP12, and SNP18) for the low frequencies, although only a single SNP (SNP12) resulted in significant p-values in both populations. Nevertheless, the associated SNPs of both populations were all located in the same 13-kb region in the middle of the KCNQ4 gene.


Subject(s)
Hearing Loss/genetics , KCNQ Potassium Channels/genetics , Adult , Age Factors , Aged, 80 and over , Analysis of Variance , DNA Mutational Analysis/methods , Female , Gene Frequency/genetics , Genetic Predisposition to Disease/genetics , Genotype , Haplotypes/genetics , Hearing Loss/pathology , Humans , Linkage Disequilibrium/genetics , Male , Middle Aged , Models, Genetic , Polymorphism, Single Nucleotide/genetics , Quantitative Trait Loci/genetics
12.
Mol Psychiatry ; 11(3): 286-300, 2006 Mar.
Article in English | MEDLINE | ID: mdl-16389274

ABSTRACT

Nitric oxide (NO) is a gaseous neurotransmitter thought to play important roles in several behavioral domains. On a neurobiological level, NO acts as the second messenger of the N-methyl-D-aspartate receptor and interacts with both the dopaminergic as well as the serotonergic system. Thus, NO is a promising candidate molecule in the pathogenesis of endogenous psychoses and a potential target in their treatment. Furthermore, the chromosomal locus of the gene for the NO-producing enzyme NOS-I, 12q24.2, represents a major linkage hot spot for schizophrenic and bipolar disorder. To investigate whether the gene encoding NOS-I (NOS1) conveys to the genetic risk for those diseases, five NOS1 polymorphisms as well as a NOS1 mini-haplotype, consisting of two functional polymorphisms located in the transcriptional control region of NOS1, were examined in 195 chronic schizophrenic, 72 bipolar-I patients and 286 controls. Single-marker association analysis showed that the exon 1c promoter polymorphism was linked to schizophrenia (SCZ), whereas synonymous coding region polymorphisms were not associated with disease. Long promoter alleles of the repeat polymorphism were associated with less severe psychopathology. Analysis of the mini-haplotype also revealed a significant association with SCZ. Mutational screening did not detect novel exonic polymorphisms in patients, suggesting that regulatory rather than coding variants convey the genetic risk on psychosis. Finally, promoter polymorphisms impacted on prefrontal functioning as assessed by neuropsychological testing and electrophysiological parameters elicited by a Go-Nogo paradigm in 48 patients (continuous performance test). Collectively these findings suggest that regulatory polymorphisms of NOS1 contribute to the genetic risk for SCZ, and modulate prefrontal brain functioning.


Subject(s)
Nitric Oxide Synthase Type I/genetics , Polymorphism, Genetic , Prefrontal Cortex/physiopathology , Schizophrenia/genetics , Adult , Bipolar Disorder/enzymology , Bipolar Disorder/genetics , Chromosome Mapping , DNA Mutational Analysis , Female , Gene Expression Regulation, Enzymologic , Genetic Linkage , Humans , Male , Middle Aged , Minisatellite Repeats/genetics , Polymorphism, Single Nucleotide , Prefrontal Cortex/enzymology , Promoter Regions, Genetic , Reference Values , Risk Factors , Schizophrenia/enzymology , Schizophrenia/epidemiology
13.
J Med Genet ; 43(6): 517-22, 2006 Jun.
Article in English | MEDLINE | ID: mdl-16339849

ABSTRACT

INTRODUCTION: Variant R620W of protein tyrosine phosphatase non-receptor type 22 (PTPN22) has consistently been reported as a susceptibility factor for several autoimmune diseases. We investigated its role in susceptibility to psoriasis, the relevance of possibly other disease-causing variants, and interdependency of the major risk factor for psoriasis at PSORS1. METHODS: R620W was tested in a case-control study initially with 375 German patients and then with an enlarged sample of an additional 418 patients. Analyses were extended to linkage disequilibrium (LD) based haplotypes. Potential interaction between risk haplotypes of PTPN22 and the PSORS1 associated risk allele was tested by regression analysis. PTPN22 coding sequence was determined in 20 patients carrying the risk haplotype. Association and regression analysis were also performed in the extended case-control study. RESULTS: R620W was not associated in either case-control study, while significant association (corrected for multiple testing) with one haplotype (C-4) of the LD block encompassing PTPN22 as well with another haplotype (B-3) within an adjacent telomeric LD block was detected. No evidence for interaction between risk haplotype C-4 and the PSORS1 associated risk allele was found. Sequencing excluded other coding variants within PTPN22 as a basis for association findings. Analysis of the extended study group confirmed association for haplotypes B-3 and C-4 and independence of risk haplotypes C-4 and PSORS1. DISCUSSION: We exclude a major role of *620W in German psoriasis patients but suggest that other susceptibility determinant(s) within non-coding regions of PTPN22 or its proximity might exist acting independently of the major PSORS1 risk factor.


Subject(s)
Genetic Predisposition to Disease , Protein Tyrosine Phosphatases/genetics , Psoriasis/genetics , Alleles , Case-Control Studies , DNA Mutational Analysis , Female , Germany , Haplotypes , Humans , Linkage Disequilibrium , Male , Mutation, Missense , Polymorphism, Single Nucleotide , Protein Tyrosine Phosphatase, Non-Receptor Type 22 , Psoriasis/diagnosis , Risk Factors
14.
Ophthalmologe ; 102(11): 1029-35, 2005 Nov.
Article in German | MEDLINE | ID: mdl-16170519

ABSTRACT

Age-related macular degeneration is a complex genetic disorder. Recent data suggest that the additive genetic risk for late-stage disease is more than two-thirds. Comprehensive genetic studies (candidate gene approaches, linkage and association studies) have been performed in recent years to identity the genetic risk factors at the molecular lavel. Very recently, a significant risk allele, Y402H, has been discovered in the complement factor H (CFH) gene. The relative risk of developing AMD has been estimated between 2.4-4.6 for heterozygotes and 3.3-7.4 for homozygotes. This polymorphism accounts for approximately 20-50% of the overall risk of developing AMD. In this review the results from molecular genetic studies in AMD are summarized, with a special emphasis on the recent data obtained for the CFH gene.


Subject(s)
Aryl Hydrocarbon Hydroxylases/genetics , Macular Degeneration/blood , Macular Degeneration/epidemiology , Risk Assessment/methods , Complement Factor H/genetics , DNA Mutational Analysis/methods , France/epidemiology , Genetic Predisposition to Disease/epidemiology , Genetic Testing/methods , Humans , Incidence , Macular Degeneration/genetics , Polymorphism, Genetic , Risk Factors
15.
Exp Dermatol ; 12(4): 490-6, 2003 Aug.
Article in English | MEDLINE | ID: mdl-12930307

ABSTRACT

To follow up the novel psoriasis susceptibility region on chromosome 19 (PSORS6), we performed an association scan for psoriasis vulgaris using 45 evenly spaced DNA microsatellite markers. For this study, a new independent sample of 210 nuclear psoriasis families (trio design) from Northern Germany was recruited. We used the family based association test (FBAT) for an association scan over the chromosome 19 region encompassing 50.8 cM. We obtained a positive association for the markers D19S922 (allele 5, P = 0.008) and D19S916 (allele 13, P = 0.016), which correspond to the peak of the region identified in a previously performed scan. We identified two novel regions by a single marker, each showing negative association at D19S917 on 19p13.1 (allele 8, P = 0.0034) and at D19S425 (allele 9, P = 0.0005), compatible with the hypothesis of protective loci. These two novel regions were explored in more detail using novel microsatellite markers at an average distance of 100 kb. A separate analysis distinguishing between familial (n = 137) and sporadic (n = 73) psoriasis families showed that the familial trios contribute strongly in the region around D19S425 (P = 0.004), while the comparably small subset of 73 sporadic trios has a stronger effect at the locus around D19S917 (P = 0.026). These studies confirm the existence of a psoriasis susceptibility locus on chromosome 19 and give first evidence for the existence of both susceptible and protective loci in this region. Analysis of a dense marker set from these refined regions will eventually allow identification of the underlying susceptibility alleles.


Subject(s)
Chromosomes, Human, Pair 19/genetics , Psoriasis/genetics , Alleles , Chromosome Mapping , Female , Humans , Male , Microsatellite Repeats
16.
Br J Dermatol ; 149(2): 381-5, 2003 Aug.
Article in English | MEDLINE | ID: mdl-12932247

ABSTRACT

BACKGROUND: The anti-inflammatory cytokine interleukin (IL)-10 is considered to play a major role in the pathophysiology of psoriasis, which is characterized by an IL-10 deficiency. Systemic administration of IL-10 has been shown to be an effective therapy for psoriasis. The IL-10 promoter region contains a highly polymorphic microsatellite (IL10.G) and in a recent case-control study the IL10.G13 (144 bp) allele was found to be associated with familial early onset psoriasis (type 1 psoriasis) having a susceptible effect. OBJECTIVES: As it is essential in multifactorial diseases to replicate findings before definite conclusions can be drawn, we decided to perform a follow-up study and to follow a genetic approach analysing allele transmission in families with a positive family history of psoriasis. METHODS: We studied 137 nuclear families (trio-design) comprising 456 individuals and genotyped the IL10.G marker. For comparison we also genotyped the microsatellite tn62 as a reference marker of the major psoriasis susceptibility locus on chromosome 6p21 (PSORS1). In the present study allele transmission was evaluated using the family-based association test (FBAT) and GENEHUNTER 2.0 based on the transmission/disequilibrium test. RESULTS: The G13 allele (144 bp) had a frequency of 24%, was present in 88 families and clearly showed an even transmission (FBAT, P = 0.753). In contrast, allele 3 (IL10.G9) (136 bp) had a frequency of 39%, was present in 110 families and was transmitted in 43 trios and remained untransmitted in 67 trios (FBAT, P = 0.026), thus showing preferential nontransmission. For the HLA-linked tn62-marker we obtained a P-value of 0.00027 for allele 4 in the same study group. CONCLUSIONS: In conclusion, we failed to confirm the susceptible effect of the G13 allele, but provide the first data for a protective effect of allele 3 (IL10.G9) for familial psoriasis. Our results suggest that the IL10.G polymorphism is not a major locus, but acts as a minor locus.


Subject(s)
Genetic Predisposition to Disease , Interleukin-10/genetics , Polymorphism, Genetic , Promoter Regions, Genetic/genetics , Psoriasis/genetics , Alleles , Female , Follow-Up Studies , Genetic Markers , Genotype , Humans , Male , Microsatellite Repeats/genetics
18.
Epilepsy Res ; 51(1-2): 23-9, 2002 Sep.
Article in English | MEDLINE | ID: mdl-12350381

ABSTRACT

A recent genome-wide scan revealed suggestive evidence for two susceptibility loci for idiopathic generalized epilepsy (IGE) in the chromosomal regions 5p15 and 5q14-q22 in families with typical absence seizures. The present replication study tested the validity of the tentative IGE loci on chromosome 5. Our study included 99 multiplex families in which at least one family member had typical absence seizures. Parametric and non-parametric multipoint linkage analyses were carried out between the IGE trait and 23 microsatellite polymorphisms covering the entire region of chromosome 5. Multipoint parametric heterogeneity lod scores < -2 were obtained along chromosome 5 when a proportion of linked families greater than 50% was assumed under recessive inheritance and > 60% under dominant inheritance. Furthermore, non-parametric multipoint linkage analyses revealed no hint of linkage throughout the candidate region (P > 0.05). Accordingly, we failed to support previous evidence for common IGE loci on chromosome 5. If there is a susceptibility locus for IGE on chromosome 5 then the size of the effect or the proportion of linked families is too small to detect linkage in the investigated family sample.


Subject(s)
Chromosomes, Human, Pair 5 , Epilepsy, Generalized/genetics , Genetic Predisposition to Disease , Chromosome Mapping , Family Health , Genetic Linkage , Genotype , Humans , Lod Score , Pedigree , Polymorphism, Genetic
19.
J Neural Transm (Vienna) ; 109(5-6): 939-46, 2002 May.
Article in English | MEDLINE | ID: mdl-12111480

ABSTRACT

Two polymorphic dinucleotide repeats separated by a short spacer are localized in the promoter region of the serotonin receptor 2C gene ( HTR2C). One of the repeats was found to be evolutionary conserved between humans and rhesus monkeys. Although promoter-associated microsatellites have previously been shown to regulate expression of different genes, we did not find any significant influence of distinct HTR2C promoter microsatellite alleles on transcriptional efficiency as measured by luciferase activity and receptor availability as assayed by [(3)H]-mesulergine binding. Furthermore, no association of specific alleles with bipolar disorder was found. These results indicate that the HTR2C promoter polymorphism does not contribute significantly to the etiopathogenesis of bipolar disorder in females.


Subject(s)
Biological Evolution , Bipolar Disorder/genetics , Microsatellite Repeats/genetics , Promoter Regions, Genetic/genetics , Receptors, Serotonin/genetics , Aged , Aged, 80 and over , Alleles , Animals , Base Sequence/genetics , Cell Line , Conserved Sequence/genetics , Dinucleotide Repeats , Female , Gene Frequency , Humans , Macaca mulatta , Male , Molecular Sequence Data , Rats , Receptor, Serotonin, 5-HT2C
20.
Mol Psychiatry ; 7(2): 220-3, 2002.
Article in English | MEDLINE | ID: mdl-11840317

ABSTRACT

The gene encoding the neuronal nicotinic acetylcholine receptor alpha7 subunit (CHRNA7) is located on chromosome 15q13.2. This region was suggested to be involved in the etiopathogenesis of: (a) schizophrenia combined with a neurophysiological deficit; (b) lithium-responsive bipolar disorder; and (c) familial catatonic schizophrenia (periodic catatonia). Therefore, members of a large family with periodic catatonia strongly supporting the chromosome 15q13-22 region were genotyped with polymorphic markers localized around the CHRNA7 locus. A recombination event distally of marker D15S144 leading to the exclusion of the CHRNA7 locus from this candidate region was detected in one branch of the pedigree. This result provides strong evidence that a gene located telomeric to CHRNA7 is causative for the pathogenesis of catatonic schizophrenia in this family.


Subject(s)
Chromosomes, Human, Pair 15 , Genetic Linkage , Receptors, Nicotinic/genetics , Schizophrenia, Catatonic/genetics , Family Health , Female , Humans , Male , Pedigree , alpha7 Nicotinic Acetylcholine Receptor
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