Prioritization of the concepts and skills in quantitative education for graduate students in biomedical science.

Substantial guidance is available on undergraduate quantitative training for biologists, including reports focused on biomedical science. Far less attention has been paid to the graduate curriculum and the particular challenges of the diversity of specialization within the life sciences. We propose an innovative approach to quantitative education that goes beyond recommendations of a course or set of courses or activities, derived from analysis of the expectations for students in particular programs. Due to the plethora of quantitative methods, it is infeasible to expect that biomedical PhD students can be exposed to more than a minority of the quantitative concepts and techniques employed in modern biology. We collected key recent papers suggested by the faculty in biomedical science programs, chosen to include important scientific contributions that the faculty consider appropriate for all students in the program to be able to read with confidence. The quantitative concepts and methods inherent in these papers were then analyzed and categorized to provide a rational basis for prioritization of those concepts to be emphasized in the education program. This novel approach to prioritization of quantitative skills and concepts provides an effective method to drive curricular focus based upon program-specific faculty input for science programs of all types. The results of our particular application to biomedical science training highlight the disconnect between typical undergraduate quantitative education for life science students, focused on continuous mathematics, and the concepts and skills in graphics, statistics, and discrete mathematics that arise from priorities established by biomedical science faculty. There was little reference in the key recent papers chosen by faculty to classic mathematical areas such as calculus which make up a large component of the formal undergraduate mathematics training of graduate students in biomedical areas.

Short-term Detection of Imidacloprid in Streams after Applications in Forests.

Imidacloprid, a neonicotinoid insecticide, is a major component of hemlock woolly adelgid (HWA) [ (Annand)] management programs that are critical to protecting forest health in the eastern United States. However, the impact of imidacloprid soil applications in forests on some aquatic macroinvertebrate species by leaching into aquatic systems is uncertain. The time for residues from imidacloprid soil applications to migrate from treated hemlocks to nearby streams and the concentrations at which imidacloprid may occur after initial migration is unknown. The presence and concentration of imidacloprid in three streams adjacent to recently treated hemlock (soil drench >10 m from stream channels) were assessed in the Big South Fork National River and Recreation Area. Two standard water grabs were collected monthly for 1 yr from a location downstream from imidacloprid-treated areas. Samples were analyzed using liquid chromatography tandem mass spectrometry (limit of detection = 0.025 µg L). Imidacloprid was detected in all treatment streams during a single rain event that occurred 184 to 196 d after treatments, and concentrations ranged from 0.053 to 0.833 µg L. Imidacloprid was not detected on any other sampling date from treatment streams. All observed positive detections exceeded the USEPA freshwater invertebrate chronic endpoint (0.01 µg L). One stream sample exceeded the USEPA freshwater invertebrate acute endpoint (0.39 µg L). However, previous macroinvertebrate community assessments in streams with similar concentrations did not indicate negative effects to aquatic fauna. These findings help characterize the risk of imidacloprid treatments to stream macroinvertebrates within 1 yr of soil applications.

Molecular and genomic basis of volatile-mediated indirect defense against insects in rice.

Rice plants fed on by fall armyworm (Spodoptera frugiperda, FAW) caterpillars emit a blend of volatiles dominated by terpenoids. These volatiles were highly attractive to females of the parasitoid Cotesia marginiventris. Microarray analysis identified 196 rice genes whose expression was significantly upregulated by FAW feeding, 18 of which encode metabolic enzymes potentially involved in volatile biosynthesis. Significant induction of expression of seven of the 11 terpene synthase (TPS) genes identified through the microarray experiments was confirmd using real-time RT-PCR. Enzymes encoded by three TPS genes, Os02g02930, Os08g07100 and Os08g04500, were biochemically characterized. Os02g02930 was found to encode a monoterpene synthase producing the single product S-linalool, which is the most abundant volatile emitted from FAW-damaged rice plants. Both Os08g07100 and Os08g04500 were found to encode sesquiterpene synthases, each producing multiple products. These three enzymes are responsible for production of the majority of the terpenes released from FAW-damaged rice plants. In addition to TPS genes, several key genes in the upstream terpenoid pathways were also found to be upregulated by FAW feeding. This paper provides a comprehensive analysis of FAW-induced volatiles and the corresponding volatile biosynthetic genes potentially involved in indirect defense in rice. Evolution of the genetic basis governing volatile terpenoid biosynthesis for indirect defense is discussed.

Elucidation of the genomic basis of indirect plant defense against insects.

Using airborne signals to attract herbivore predators and parasitoids is an important strategy that plants use in defense against herbivorous insects. The volatiles involved in this indirect plant defense are often chemically complex and variable across species. We recently established rice as a model for studying the molecular and genomic basis of volatile-mediated indirect plant defense. Rice plants when damaged by fall armyworm larvae become highly attractive to parasitic wasps. The volatiles potentially responsible for parasitoid attraction were determined to be a blend of compounds predominated by terpenoids, of which S-linalool is the most abundant. Racemic linalool alone was shown to be effective in attracting parasitic wasps. By combining volatile profiling and microarray analysis, a catalog of candidate genes for volatile biosynthesis was identified. Three genes encoding terpene synthases were biochemically characterized. They are responsible for the production of the majority of volatile terpenes released from insect-damaged rice plants. Additional candidate genes are being currently characterized for their role in production of other insect-induced volatiles from rice plants. Identification of a complete set of key genes for synthesizing herbivory-induced volatiles in rice will provide an important reference for comparative studies of this important defense trait across a variety of plant species.