Molecular Engineering of Stabilized Silicon-Rosindolizine Shortwave Infrared Fluorophores.

Fluorescence-based biological imaging in the shortwave infrared (SWIR, 1000-1700 nm) is an attractive replacement for modern in vivo imaging techniques currently employed in both medical and research settings. Xanthene-based fluorophores containing heterocycle donors have recently emerged as a way to access deep SWIR emitting fluorophores. A concern for xanthene-based SWIR fluorophores though is chemical stability toward ambient nucleophiles due to the high electrophilicity of the cationic fluorophore core. Herein, a series of SWIR emitting silicon-rosindolizine (SiRos) fluorophores with emission maxima >1300 nm (up to 1550 nm) are synthesized. The SiRos fluorophore photophysical properties and chemical stability toward nucleophiles are examined through systematic derivatization of the silicon-core alkyl groups, indolizine donor substitution, and the use of o-tolyl or o-xylyl groups appended to the fluorophore core. The dyes are studied via absorption spectroscopy, steady-state emission spectroscopy, solution-based cyclic voltammetry, time-dependent density functional theory (TD-DFT) computational analysis, X-ray diffraction crystallography, and relative chemical stability over time. Optimal chemical stability is observed via the incorporation of the 2-ethylhexyl silicon substituent and the o-xylyl group to protect the core of the fluorophore.

Design and Synthesis of RhodIndolizine Dyes with Improved Stability and Shortwave Infrared Emission up to 1250 nm.

The design of shortwave infrared (SWIR) emissive small molecules with good stability in water remains an important challenge for fluorescence biological imaging applications. A series of four SWIR emissive rhodindolizine (RI) dyes were rationally designed and synthesized to probe the effects of nonconjugated substituents, conjugated donor groups, and nanoencapsulation in a water-soluble polymer on the stability and optical properties of the dyes. Steric protecting groups were added at the site of a significant LUMO presence to probe the effects on stability. Indolizine donor groups with added dimethylaniline groups were added to reduce the electrophilicity of the dyes toward nucleophiles such as water. All of the dyes were found to absorb (920-1096 nm peak values) and emit (1082-1256 nm peak values) within the SWIR region. Among xanthene-based emissive dyes, emission values >1200 nm are exceptional with 1256 nm peak emission being a longer emission than the recent record setting VIX-4 xanthene-based dye. Half-lives were improved from ∼5 to >24 h through the incorporation of either steric-based core protection groups or donors with increased donation strength. Importantly, the nanoencapsulation of the dyes in a water-soluble surfactant (Triton-X) allows for the use of these dyes in biological imaging applications.

Crystal structure of bulky-ligand-protected Au24(S-C4H9)16.

Atomically precise thiolate-protected gold nanomolecules have attracted interest due to their distinct electronic and chemical properties. The structure of these nanomolecules is important for understanding their peculiar properties. Here, we report the X-ray crystal structure of a 24-atom gold nanomolecule protected by 16 tert-butylthiolate ligands. The composition of Au24(S-C4H9)16 {poly[hexadecakis(µ-tert-butylthiolato)tetracosagold]} was confirmed by X-ray crystallography and electrospray ionization mass spectrometry (ESI-MS). The nanomolecule was synthesized in a one-phase synthesis and crystallized from a hexane-ethanol layered solution. The X-ray structure confirms the 16-atom core protected by two monomeric and two trimeric staples with four bridging ligands. The Au24(S-C4H9)16 cluster follows the shell-closing magic number of 8.

Size Exclusion Chromatography: An Indispensable Tool for the Isolation of Monodisperse Gold Nanomolecules.

Highly monodisperse and pure samples of atomically precise gold nanomolecules (AuNMs) are essential to understand their properties and to develop applications using them. Unfortunately, the synthetic protocols that yield a single-sized nanomolecule in a single-step reaction are unavailable. Instead, we observe a polydisperse product with a mixture of core sizes. This product requires post-synthetic reactions and separation techniques to isolate pure nanomolecules. Solvent fractionation based on the varying solubility of different sizes serves well to a certain extent in isolating pure compounds. It becomes tedious and offers less control while separating AuNMs that are very similar in size. Here, we report the versatile and the indispensable nature of using size exclusion chromatography (SEC) as a tool for separating nanomolecules and nanoparticles. We have demonstrated the following: (1) the ease of separation offered by SEC over solvent fractionation; (2) the separation of a wider size range (∼5-200 kDa or ∼1-3 nm) and larger-scale separation (20-100 mg per load); (3) the separation of closely sized AuNMs, demonstrated by purifying Au137(SR)56 from a mixture of Au329(SR)84, Au144(SR)60, Au137(SR)56, and Au130(SR)50, which could not be achieved using solvent fractionation; (4) the separation of AuNMs protected by different thiolate ligands (aliphatic, aromatic, and bulky); and (5) the separation can be improved by increasing the column length. Mass spectrometry was used for analyzing the SEC fractions.

Crystal Structure of Au30-xAgx(S-tBu)18 and Effect of the Ligand on Ag Alloying in Gold Nanomolecules.

We report the X-ray crystal structure of the Au30-xAgx(S-tBu)18 alloy and the effect of the ligand on alloying site preferences. Gold-silver nanoalloys prepared by co-reduction of metal salts are known to have only partial Ag occupancies. Interestingly, Au30-xAgx(S-tBu)18 has 100% Ag occupancy at two sites on the core surface as well as partial Ag occupancies on the surface, capping, and staples sites. The Au30-xAgx(S-tBu)18 (x = 1-5) composition was confirmed by X-ray diffraction and electrospray ionization mass spectrometry studies. Thiolate ligands can be categorized into three classes on the basis of the groups at the α-position as aliphatic, aromatic, and bulky thiols. The effect of the ligand on Ag doping can be clearly seen in the crystal structures of Au36-xAgx(SPh-tBu)24 and Au38-xAgx(SCH2CH2Ph)24 when compared with that of Au30-xAgx(S-tBu)18. Ag is preferentially doped onto the core surface when the ligand is aliphatic, and Ag is doped in both core surface and staple metal sites when the ligand is aromatic or bulky.