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1.
BJA Educ ; 22(9): 343-349, 2022 Sep.
Article in English | MEDLINE | ID: mdl-36033931
2.
Appl Opt ; 60(19): D52-D72, 2021 Jul 01.
Article in English | MEDLINE | ID: mdl-34263828

ABSTRACT

Over the last decade, the vector-apodizing phase plate (vAPP) coronagraph has been developed from concept to on-sky application in many high-contrast imaging systems on 8 m class telescopes. The vAPP is a geometric-phase patterned coronagraph that is inherently broadband, and its manufacturing is enabled only by direct-write technology for liquid-crystal patterns. The vAPP generates two coronagraphic point spread functions (PSFs) that cancel starlight on opposite sides of the PSF and have opposite circular polarization states. The efficiency, that is, the amount of light in these PSFs, depends on the retardance offset from a half-wave of the liquid-crystal retarder. Using different liquid-crystal recipes to tune the retardance, different vAPPs operate with high efficiencies (${\gt}96\%$) in the visible and thermal infrared (0.55 µm to 5 µm). Since 2015, seven vAPPs have been installed in a total of six different instruments, including Magellan/MagAO, Magellan/MagAO-X, Subaru/SCExAO, and LBT/LMIRcam. Using two integral field spectrographs installed on the latter two instruments, these vAPPs can provide low-resolution spectra (${\rm{R}} \sim 30$) between 1 µm and 5 µm. We review the design process, development, commissioning, on-sky performance, and first scientific results of all commissioned vAPPs. We report on the lessons learned and conclude with perspectives for future developments and applications.

3.
Br J Neurosurg ; 22(4): 520-8, 2008 Aug.
Article in English | MEDLINE | ID: mdl-18803079

ABSTRACT

Although increasingly used, the precise role of radiotherapy in the management of meningiomas is still disputed. The objective of this study, therefore, was to appraise the evidence for adjuvant radiotherapy in benign and atypical intracranial meningiomas, and to compare and contrast it with the current opinion and practice of neurosurgeons in the United Kingdom and the Republic of Ireland. The use of radiotherapy as a primary treatment strategy or its use in the treatment of recurrence was not considered. We performed a systematic review of the evidence for adjuvant radiotherapy in benign and atypical intracranial meningiomas, surveyed current opinion amongst neurosurgeons involved in such cases and ascertained local practice using data from the regional cancer registry. Overall, 10 cohorts were identified that fulfilled our eligibility criteria. Four studies showed significantly improved local control in patients receiving adjuvant radiotherapy for incompletely resected grade I meningiomas. Our survey demonstrated that the vast majority (98%) of neurosurgeons would not recommend adjuvant radiotherapy in grade I meningioma. In grade II meningioma, most (80%) would not advocate adjuvant radiotherapy if completely excised, but the majority (59%) would recommend radiotherapy in cases of subtotal resection. Significant variation in opinion between centres exists, however, particularly in cases of completely resected atypical meningiomas (p = 0.02). Data from the Eastern Cancer Registration and Information Centre appears to be in line with these findings: less than 10% of patients with grade I meningiomas, but almost 30% of patients with grade II meningiomas received adjuvant radiotherapy in the Eastern region. In conclusion, our study has highlighted significant variation in opinion and practice, reflecting a lack of class 1 evidence to support the use of adjuvant radiotherapy in the treatment of meningiomas. Efforts are underway to address this with a randomized multicentre trial comparing a policy of watchful waiting versus adjuvant irradiation.


Subject(s)
Evidence-Based Medicine , Meningeal Neoplasms/radiotherapy , Meningioma/radiotherapy , Female , Humans , Ireland , Male , Meningeal Neoplasms/pathology , Meningeal Neoplasms/surgery , Meningioma/pathology , Meningioma/surgery , Neoplasm Staging , Practice Guidelines as Topic , Radiotherapy, Adjuvant , United Kingdom
4.
Br J Neurosurg ; 21(6): 593-8, 2007 Dec.
Article in English | MEDLINE | ID: mdl-18071987

ABSTRACT

The last decade has witnessed a resurgence of interest in the surgical treatment of metastatic spinal disease to compliment radiotherapy. A recent randomized controlled trial looking directly at this issue concluded strongly in favour of a combination of surgical decompression and radiotherapy, and there is now growing enthusiasm for surgery to play a role in the management of these patients. We present a prospective cohort study of 62 patients who presented with metastatic cord or cauda equina compression, and were treated with surgical decompression and fixation where necessary. Patients were treated by one surgeon working in a single unit. They were followed-up long term and were assessed objectively, by clinical assessment and prospective questionnaires that included SF36, visual analogue pain scores and Roland Morris back pain scores. Sixty-two patients with a median age of 62 (22-79 years, 27 male) were included in the study. The commonest primary tumours were breast (26%) and lymphoma (13%). The majority of patients had involvement of thoracic vertebrae (58%). 56% of patients were alive at 1 year and 28% at 3 years, with significant improvements observed in both walking and continence. Similarly, significant improvements were seen in SF36 quality of life scores as well as pain. With careful patient selection, long-term survival and good quality of life can be achieved. However, not every patient is suitable or appropriate for surgery, and the discussion focuses on where the surgical threshold should be set.


Subject(s)
Nerve Compression Syndromes/surgery , Spinal Cord Neoplasms/surgery , Adult , Aged , Cauda Equina/surgery , Decompression, Surgical/methods , Epidemiologic Methods , Female , Humans , Male , Middle Aged , Nerve Compression Syndromes/mortality , Neurosurgical Procedures/methods , Pain, Postoperative/diagnosis , Pain, Postoperative/etiology , Quality of Life , Spinal Cord Neoplasms/mortality , Spinal Cord Neoplasms/secondary
5.
Br J Neurosurg ; 20(6): 391-5, 2006 Dec.
Article in English | MEDLINE | ID: mdl-17439091

ABSTRACT

Lumbar canal stenosis (LCS) is a common condition affecting elderly patients for which a significant number undergo surgery. The validity and safety of simple laminectomy in this condition is not fully understood. Furthermore, the presence of pre-existing spondylolisthesis is controversial with respect to the need for additional spinal stabilization. We prospectively studied a consecutive cohort of 100 patients with clinical and radiological LCS under the care of a single spinal surgeon. Outcome measures (SF-36, visual analogue scores for back and leg symptoms, and the Roland/Morris back pain scores) were assessed preoperatively, 3 months postsurgery and at long-term (median 2 years) follow-up. We have shown a significant improvement in outcome sustained in the long-term with minimal morbidity. Patients with pre-existing spondylolisthesis accounted for 23% of the cohort and, having received identical treatment, showed no significant difference in outcome compared with patients with normal alignment.


Subject(s)
Laminectomy , Lumbar Vertebrae/surgery , Spinal Stenosis/surgery , Spondylolisthesis/surgery , Aged , Cohort Studies , Female , Humans , Low Back Pain/diagnosis , Male , Middle Aged , Pain Measurement , Prospective Studies
6.
Bioorg Med Chem Lett ; 15(19): 4180-4, 2005 Oct 01.
Article in English | MEDLINE | ID: mdl-16087332

ABSTRACT

We have discovered that introduction of appropriate amino acid derivatives at P'2 position improved the binding potency of P3-capped alpha-ketoamide inhibitors of HCV NS3 serine protease. X-ray crystal structure of one of the inhibitors (43) bound to the protease revealed the importance of the P'2 moiety.


Subject(s)
Hepacivirus/chemistry , Serine Proteinase Inhibitors/chemistry , Viral Nonstructural Proteins/antagonists & inhibitors , Binding Sites , Crystallography, X-Ray , Molecular Structure , Protein Binding , Structure-Activity Relationship , Viral Nonstructural Proteins/chemistry
7.
CNS Drug Rev ; 10(4): 281-94, 2004.
Article in English | MEDLINE | ID: mdl-15592579

ABSTRACT

Chlormethiazole is a thiazole derivative with a long history of use as a sedative agent. The mode of action of the drug has been partly worked out and has been established with recognition that its mechanism of action involves potentiation of GABA activity, the major intrinsic inhibitory neurotransmitter. Animal models of stroke ranging from rodents to primates have suggested an optimistic role for chlormethiazole in preventing both anatomical and functional deleterious effects of stroke. Phase III clinical trials, therefore, proceeded but unfortunately with very little success. Recently, the animal models have been revisited in an attempt to identify causes for this discrepancy between the results from preclinical and clinical studies. This review studies the pharmacological roots of chlormethiazole from its origin through to its licensed and novel applications. Emphasis is placed on discussing the animal experiments which led to its grooming as a neuroprotective agent and also on the human trials. The review seeks to explain the discrepancies between animal and human studies, which include short survival times of experimental subjects, speed of drug administration and fundamental differences between species. The primate model of stroke perhaps offers the nearest alternative to phase III trials and has recently been used to compare a number of newer neuroprotective agents with greater efficacy than chlormethiazole. In addition, novel approaches involving human neurochemical analyses in vivo are described which may help bridge the gap between animal models and future phase III trials.


Subject(s)
Chlormethiazole/pharmacology , Chlormethiazole/therapeutic use , Neuroprotective Agents/pharmacology , Neuroprotective Agents/therapeutic use , Animals , Chlormethiazole/chemistry , Humans , Neuroprotective Agents/chemistry
9.
Exp Neurol ; 159(1): 225-36, 1999 Sep.
Article in English | MEDLINE | ID: mdl-10486190

ABSTRACT

We have treated spinal cord injured rats with demyelination plus Schwann cell transplantation and assessed neurite outgrowth in a quantifiable model of axonal regeneration. Axonal injuries of differing severity were induced in the dorsal funiculus of adult rats using a micromanipulator-controlled Scouten knife. Demyelinated regions were produced so as to overlap with the injury site by the injection of galactocerebroside antibodies plus complement one segment cranial to the axonal injury site. Schwann cells were isolated from the sciatic nerve, expanded in vitro, and transplanted into the injury site 1 day later. Animals were killed after an additional 7 days. Schwann cells were evenly distributed throughout the region of demyelination, which extended 6-7 mm cranial to the axonal injury site. The severity of axonal injury was quantified by counting degenerate axons in transverse resin sections. The degree of axonal regeneration was assessed by an electron microscopic analysis of growth cone frequency and distribution relative to the site of axonal injury. Quantification of growth cones at a distance from the site of axonal injury indicated a strong linear relationship (P < 0.001) between the number of growth cones and the number of severed axons; the ratio of growth cones to severed axons was increased by 26.5% in demyelinated plus transplanted animals compared to demyelinated animals without a transplant. Furthermore, only the demyelinated plus transplanted animals contained growth cones associated with myelin in white matter immediately outside of the region of complete demyelination. Growth cones were absent in transplanted-only animals at a distance from the site of axonal injury. These findings indicate that combined demyelination plus Schwann cell transplantation therapy enhances axonal regeneration following injury and suggests that growth cones are able to overcome myelin-associated inhibitors of neurite outgrowth in the presence of trophic support.


Subject(s)
Axons/physiology , Demyelinating Diseases/therapy , Nerve Regeneration , Schwann Cells/transplantation , Spinal Cord Injuries/therapy , Age Factors , Animals , Antibodies/pharmacology , Axons/ultrastructure , Axotomy , Complement System Proteins , Demyelinating Diseases/chemically induced , Female , Galactosylceramides/immunology , Growth Cones/physiology , Growth Cones/ultrastructure , Microscopy, Electron , Myelin Sheath/physiology , Oligodendroglia/cytology , Oligodendroglia/physiology , Rats , Rats, Sprague-Dawley , Schwann Cells/ultrastructure , Spinal Cord/cytology , Spinal Cord/physiology
10.
Mol Cell Neurosci ; 14(1): 66-84, 1999 Jul.
Article in English | MEDLINE | ID: mdl-10433818

ABSTRACT

Astrocytes exclude Schwann cells (SCs) from the central nervous system (CNS) at peripheral nerve entry zones and restrict their migration after transplantation into the CNS. We have modeled the interactions between SCs, astrocytes, and fibroblasts in vitro. Astrocytes and SCs in vitro form separate territories, with sharp boundaries between them. SCs migrate poorly when placed on astrocyte monolayers, but migrate well on various other surfaces such as laminin (LN) and skin fibroblasts. Interactions between individual SCs and astrocytes result in long-lasting adhesive contacts during which the SC is unable to migrate away from the astrocyte. In contrast, SC interactions with fibroblasts are much shorter with less arrest of migration. SCs adhere strongly to astrocytes and other SCs, but less well to substrates that promote migration, such as LN and fibroblasts. SC-astrocyte and SC-SC adhesion is mediated by the calcium-dependent cell adhesion molecule N-cadherin. Inhibition of N-cadherin function by calcium withdrawal, peptides containing the classical cadherin cell adhesion recognition sequence His-Ala-Val, or antibodies directed against this sequence inhibit SC adhesion and increase SC migration on astrocytes. We suggest that N-cadherin-mediated adhesion to astrocytes inhibits the widespread migration of SCs in CNS tissue.


Subject(s)
Astrocytes/physiology , Cadherins/physiology , Schwann Cells/physiology , Sciatic Nerve/physiology , Amino Acid Sequence , Animals , Animals, Newborn , Astrocytes/cytology , Calcium/physiology , Cell Adhesion/drug effects , Cell Adhesion/physiology , Cell Aggregation/drug effects , Cell Aggregation/physiology , Cell Line , Cell Movement/drug effects , Cell Movement/physiology , Cells, Cultured , Fibroblasts/drug effects , Fibroblasts/physiology , Microscopy, Video , Oligopeptides/pharmacology , Peptide Fragments/pharmacology , Schwann Cells/cytology , Skin/cytology
11.
Bioorg Med Chem Lett ; 9(6): 895-900, 1999 Mar 22.
Article in English | MEDLINE | ID: mdl-10206557

ABSTRACT

A novel scaffold for P4-P2 dipeptide mimics containing a rigid pyridone spacer was designed based on a virtual library strategy. Several selected nonpeptidic 4-aralkyl or 4-alkylpyridones incorporating a P1-argininal sequence were prepared. The modeling studies, synthesis and biological activities of these unique pyridone derivatives are reported herein.


Subject(s)
Arginine/chemistry , Pyridones/chemical synthesis , Thrombin/antagonists & inhibitors , Thrombin/chemistry , Factor Xa/pharmacology , Fibrinolysin/pharmacology , Inhibitory Concentration 50 , Kinetics , Models, Chemical , Trypsin/pharmacology
12.
J Neurosci ; 19(6): 2301-12, 1999 Mar 15.
Article in English | MEDLINE | ID: mdl-10066280

ABSTRACT

We have developed a novel Schwann cell line, SCTM41, derived from postnatal sciatic nerve cultures and have stably transfected a clone with a rat glial cell line-derived neurotrophic factor (GDNF) construct. Coculture with this GDNF-secreting clone enhances in vitro survival and fiber growth of embryonic dopaminergic neurons. In the rat unilateral 6-OHDA lesion model of Parkinson's disease, we have therefore made cografts of these cells with embryonic day 14 ventral mesencephalic grafts and assayed for effects on dopaminergic cell survival and process outgrowth. We show that cografts of GDNF-secreting Schwann cell lines improve the survival of intrastriatal embryonic dopaminergic neuronal grafts and improve neurite outgrowth into the host neuropil but have no additional effect on amphetamine-induced rotation. We next looked to see whether bridge grafts of GDNF-secreting SCTM41 cells would promote the growth of axons to their striatal targets from dopaminergic neurons implanted orthotopically into the 6-OHDA-lesioned substantia nigra. We show that such bridge grafts increase the survival of implanted embryonic dopaminergic neurons and promote the growth of axons through the grafts to the striatum.


Subject(s)
Corpus Striatum/physiology , Graft Survival/physiology , Nerve Fibers/physiology , Nerve Growth Factors , Nerve Tissue Proteins/metabolism , Neurons/transplantation , Schwann Cells/physiology , Substantia Nigra/physiology , Animals , Biomarkers , Cell Line , Clone Cells , Coculture Techniques , Dopamine/physiology , Glial Cell Line-Derived Neurotrophic Factor , Mesencephalon/cytology , Rats , Schwann Cells/metabolism , Schwann Cells/transplantation , Substantia Nigra/cytology , Substantia Nigra/pathology , Transfection
13.
Biochemistry ; 37(35): 12094-103, 1998 Sep 01.
Article in English | MEDLINE | ID: mdl-9724521

ABSTRACT

The crystal structures of three highly potent and selective low-molecular weight rigid peptidyl aldehyde inhibitors complexed with thrombin have been determined and refined to R values 0.152-0. 170 at 1.8-2.1 A resolution. Since the selectivity of two of the inhibitors was >1600 with respect to trypsin, the structures of trypsin-inhibited complexes of these inhibitors were also determined (R = 0.142-0.157 at 1.9-2.1 A resolution). The selectivity appears to reside in the inability of a benzenesulfonamide group to bind at the equivalent of the D-enantiomorphic S3 site of thrombin, which may be related to the lack of a 60-insertion loop in trypsin. All the inhibitors have a novel lactam moiety at the P3 position, while the two with greatest trypsin selectivity have a guanidinopiperidyl group at the P1 position that binds in the S1 specificity site. Differences in the binding constants of these inhibitors are correlated with their interactions with thrombin and trypsin. The kinetics of inhibition vary from slow to fast with thrombin and are fast in all cases with trypsin. The kinetics are examined in terms of the slow formation of a stable transition-state complex in a two-step mechanism. The structures of both thrombin and trypsin complexes show similar well-defined transition states in the S1 site and at the electrophilic carbon atom and Ser195OG. The trypsin structures, however, suggest that the first step in a two-step kinetic mechanism may involve formation of a weak transition-state complex, rather than binding dominated by the P2-P4 positions.


Subject(s)
Guanidines/chemistry , Piperidines/chemistry , Serine Proteinase Inhibitors/chemistry , Thrombin/antagonists & inhibitors , Thrombin/chemistry , Trypsin Inhibitors/chemistry , Trypsin/chemistry , Aldehydes/metabolism , Animals , Binding Sites , Cattle , Glycine/metabolism , Guanidines/metabolism , Guanidines/pharmacology , Humans , Kinetics , Macromolecular Substances , Models, Molecular , Molecular Conformation , Piperidines/metabolism , Piperidines/pharmacology , Serine Proteinase Inhibitors/metabolism , Serine Proteinase Inhibitors/pharmacology , Substrate Specificity , Thrombin/metabolism , Trypsin/metabolism , Trypsin Inhibitors/metabolism , Trypsin Inhibitors/pharmacology
14.
Holist Nurs Pract ; 12(2): 52-61, 1998 Jan.
Article in English | MEDLINE | ID: mdl-9429353

ABSTRACT

Cancer is the second leading cause of death among adults in the United States. Trends indicate that the incidence of all cancers has increased since 1973. It is currently estimated that 1 in 3 Americans now living will develop the disease. Cancer accounts for 11% of all health care costs, and its devastating physical and emotional consequences are far reaching. Despite these grim statistics, there is hope for decreasing this huge burden. Nearly two thirds of all cancers are related to life style choices, such as tobacco use, dietary factors, and exercise; therefore, the opportunity exists to reduce cancer risk greatly. The article presents an overview of major cancers and strategies for primary prevention of those cancers that are most amenable to risk reduction.


Subject(s)
Health Promotion , Neoplasms/prevention & control , Primary Prevention , Female , Humans , Life Style , Male , Neoplasms/etiology , Risk Factors
15.
Dev Biol ; 185(2): 215-28, 1997 May 15.
Article in English | MEDLINE | ID: mdl-9187084

ABSTRACT

Myelination of the peripheral nervous system (PNS) requires the migration of Schwann cells during both development and regeneration. We have characterized the expression pattern of Schwann cell integrins and analyzed their role in migration on different ECM substrates known to be present within the PNS. We found that Schwann cells in cell culture express four beta1 integrins, alpha1 beta1, alpha2 beta1, alpha6 beta1, and another unidentified beta1 integrin, as well as two alpha v integrins, alpha v beta3 and alpha v beta8. Using the Varani migration assay, we found that laminin-1, laminin-2 (merosin), and fibronectin increased Schwann cell migration, while vitronectin and collagen did not increase migration compared to an uncoated plastic substrate. Schwann cell migration on laminin-1 and laminin-2 (merosin) was blocked by antibodies against beta1 integrins, but not affected by RGD peptides or antibodies against beta3 integrins. In contrast, migration on fibronectin was unaffected by antibodies against beta1 and beta3 integrins but was blocked by RGD peptides. This in vitro study shows that there is a division of labor of Schwann cell integrins in the regulation of migration on peripheral nerve ECM components; beta1 integrins mediate migration on laminin-1 and laminin-2 (merosin), while alpha v integrins mediate migration on fibronectin. Taken together, these results suggest that multiple interactions between Schwann cell integrins and ECM within the PNS will contribute to Schwann cell migration during myelination of the PNS.


Subject(s)
Cell Movement/physiology , Extracellular Matrix/metabolism , Integrins/biosynthesis , Peripheral Nervous System/physiology , Schwann Cells/cytology , Animals , Cell Movement/drug effects , Cells, Cultured , Fibronectins/pharmacology , Laminin/pharmacology , Ligands , Mice , Rats , Schwann Cells/metabolism , Vitronectin/pharmacology
16.
Immunology ; 86(1): 25-33, 1995 Sep.
Article in English | MEDLINE | ID: mdl-7590878

ABSTRACT

This paper describes a monoclonal antibody (mAb), anti-pig CD45 (MAC323), that is directed against a polymorphic determinant. A monomorphic anti-pig CD45 mAb (K252.1E4) bound strongly to leucocytes from both MAC323+ and MAC323- pigs, demonstrating the absence of the epitope rather than the CD45 molecule. The MAC323 determinant was present on all leucocytes in positive pigs, exhibiting different expression levels on subsets (monocytes > lymphocytes > polymorphs), but was absent on red blood cells. Pigs lacking this determinant were healthy and grew normally. Careful selection of male and female SLAb/b pigs produced families that were either positive or negative for this epitope. Interbreeding within these families identified the genetic segregation of this variation, which is consistent with the CD45(323) epitope being inherited as a simple dominant autosomal gene. The lack of this determinant in certain lines of inbred pigs has been used to study the homing, lifespan and tissue distribution of donor unlabelled MAC323+ leucocytes and their subsets (using single- and two-colour immunocytological techniques) in MAC323- recipients after either intravenous injection or exchange transfusion. These results, identifying trafficking areas and subsets in constitutive lymphoid and inflammatory tissues, obtained using this genetic marker, extend those obtained previously using fluorescein isothiocyanate (FITC)-labelled donor cells.


Subject(s)
Antibodies, Monoclonal/immunology , Epitopes/immunology , Leukocyte Common Antigens/immunology , Leukocytes/immunology , Swine/immunology , Animals , Antibodies, Monoclonal/genetics , Breeding , Epitopes/genetics , Exchange Transfusion, Whole Blood , Female , Flow Cytometry , Genes, Dominant , Genetic Markers , Leukocyte Common Antigens/genetics , Leukocytes/cytology , Lymphocyte Subsets/physiology , Lymphocyte Subsets/transplantation , Male , Mice , Swine/genetics
17.
Bioorg Med Chem ; 3(8): 1009-17, 1995 Aug.
Article in English | MEDLINE | ID: mdl-7582975

ABSTRACT

The low molecular weight alpha-keto amide inhibitor CVS-1347, benzyl-SO2-Met(O2)-Pro-Arg(CO)((CONH)CH2)-phenyl, is a slow, tight binding inhibitor of alpha-thrombin amidolytic activity having a Ki = 1.28 x 10(-10) M. A complex between human alpha-thrombin and a hydrolysis product of CVS-1347 has been determined and refined using crystallography. The crystals belong to monoclinic space group C2 with cell dimensions of a = 71.08, b = 72.05 and c = 72.98 A and beta = 100.8 degrees. The structure was solved using isomorphous replacement methods and refined with resolution limits of (8.00-1.76) A to an R-value of 0.162. The Pro-Arg core of the inhibitor binds in the S2 and S1 subsites respectively, as is usually observed for Pro-Arg thrombin inhibitors. The Met(O2) side chain does not make any close contacts with the enzyme but influences the conformation of Glu192; the N-terminal benzylsulfonyl group makes an aromatic-aromatic contact with Trp215 in the hydrophobic part of the active site. The alpha-keto carboxylic acid of the proteolyzed inhibitor binds with the carboxylate group in the oxyanion hole, demonstrating that this region can accommodate an anion in a protease-peptide complex. The alpha-keto carbonyl group interacts closely with the two most important residues in the active site: the carbon atom is within a covalent bond distance of the active site Ser195 O gamma and the carbonyl oxygen is hydrogen bonded to His57.(ABSTRACT TRUNCATED AT 250 WORDS)


Subject(s)
Antithrombins/chemistry , Oligopeptides/chemistry , Protein Conformation , Thrombin/antagonists & inhibitors , Thrombin/chemistry , Amino Acid Sequence , Antithrombins/chemical synthesis , Antithrombins/pharmacology , Binding Sites , Crystallography, X-Ray , Fibrinolysin/antagonists & inhibitors , Humans , Indicators and Reagents , Kinetics , Molecular Conformation , Molecular Sequence Data , Molecular Structure , Oligopeptides/chemical synthesis , Oligopeptides/pharmacology
18.
Protein Sci ; 4(2): 178-86, 1995 Feb.
Article in English | MEDLINE | ID: mdl-7538849

ABSTRACT

Tick anticoagulant peptide (TAP) is a potent and selective 60-amino acid inhibitor of the serine protease Factor Xa (fXa), the penultimate enzyme in the blood coagulation cascade. The structural features of TAP responsible for its remarkable specificity for fXa are unknown, but the binding to its target appears to be unique. The elucidation of the TAP structure may facilitate our understanding of this new mode of serine protease inhibition and could provide a basis for the design of novel fXa inhibitors. Analyses of homo- and heteronuclear two-dimensional NMR spectra (total correlation spectroscopy, nuclear Overhauser effect spectroscopy [NOESY], constant time heteronuclear single quantum correlation spectroscopy [CT-HSQC], and HSQC-NOESY; 600 MHz; 1.5 mM TAP; pH 2.5) of unlabeled, 13C-labeled, and 15N-labeled TAP provided nearly complete 1H sequence-specific resonance assignments. Secondary structural elements were identified by characteristic NOE patterns and D2O amide proton-exchange experiments. A three-dimensional structure of TAP was generated from 412 NOESY-derived distance and 47 dihedral angle constraints. The structural elements of TAP are similar in some respects to those of the Kunitz serine protease inhibitor family, with which TAP shares weak sequence homology. This structure, coupled with previous kinetic and biochemical information, confirms previous suggestions that TAP has a unique mode of binding to fXa.


Subject(s)
Factor Xa Inhibitors , Peptides/chemistry , Serine Proteinase Inhibitors/chemistry , Ticks/chemistry , Amino Acid Sequence , Animals , Aprotinin/metabolism , Arthropod Proteins , Deuterium , Factor Xa/metabolism , Intercellular Signaling Peptides and Proteins , Magnetic Resonance Spectroscopy , Models, Molecular , Molecular Sequence Data , Molecular Structure , Peptides/metabolism , Protein Binding , Protein Structure, Secondary , Protein Structure, Tertiary , Serine Proteinase Inhibitors/metabolism , Structure-Activity Relationship
19.
J Theor Biol ; 168(4): 399-406, 1994 Jun 21.
Article in English | MEDLINE | ID: mdl-8072298

ABSTRACT

We present a simple model, describing the propagation of a travelling signal in a media that is intended to model phenomena in cardiac tissue. The model is a caricature designed to examine some characteristics of a propagating medium that can support spontaneous and non-stimulated fibrillation behaviour. The model consists of a large number of weakly interacting components, each of which operates according to a simplified set of rules. Specifically it is a form of cellular automaton, with the introduction of probabilistic nature in terms of a random refractory period.


Subject(s)
Computer Simulation , Heart/physiology , Models, Cardiovascular , Purkinje Fibers/physiology , Signal Transduction/physiology , Electrophysiology , Heart/innervation , Heart/physiopathology , Heart Diseases/physiopathology , Humans
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