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1.
Appl Microbiol Biotechnol ; 99(22): 9835-46, 2015 Nov.
Article in English | MEDLINE | ID: mdl-26227412

ABSTRACT

Extraction of chitin from mechanically pre-purified shrimp shells can be achieved by successive NaOH/HCl treatment, protease/HCl treatment or by environmentally friendly fermentation with proteolytic/lactic acid bacteria (LAB). For the last mentioned alternative, scale-up of shrimp shell chitin purification was investigated in 0.25 L (F1), 10 L (F2), and 300 L (F3) fermenters using an anaerobic, chitinase-deficient, proteolytic enrichment culture from ground meat for deproteination and a mixed culture of LAB from bio-yoghurt for decalcification. Protein removal in F1, F2, and F3 proceeded in parallel within 40 h at an efficiency of 89-91 %. Between 85 and 90 % of the calcit was removed from the shells by LAB in another 40 h in F1, F2, and F3. After deproteination of shrimp shells in F3, spent fermentation liquor was re-used for a next batch of 30-kg shrimp shells in F4 (300 L) which eliminated 85.5 % protein. The purity of the resulting chitin was comparable in F1, F2, F3, and F4. Viscosities of chitosan, obtained after chitin deacetylation and of chitin, prepared biologically or chemically in the laboratory, were much higher than those of commercially available chitin and chitosan.


Subject(s)
Animal Shells/chemistry , Calcium/metabolism , Chitin/isolation & purification , Lactobacillus/metabolism , Proteins/metabolism , Animals , Crangonidae , Lactobacillus/growth & development , Waste Management/methods
2.
Waste Manag ; 40: 63-71, 2015 Jun.
Article in English | MEDLINE | ID: mdl-25843354

ABSTRACT

Acidification of wheat bread (WBS), rye bread (RBS) and fresh biowaste suspensions (FBS), leading to lactate+acetate, lactate+acetate+n-buyrate, and acetate+propionate+n-butyrate, respectively, and biogas production as well as population dynamics were investigated. Co-fermentation of FBS (14 kg m(-3) d(-1) organic loading rate (OLR)) with WBS or RBS was stable up to an OLR of 22 kg m(-3) d(-1) and resulted in up to 3 times as much biogas. During co-fermentation at more than 20 kg m(-3) d(-1) OLR the total population increased more than 2-fold, but the originally low share of propionate-oxidizing bacteria significantly decreased. The proportion of methanogens also decreased. Whereas the proportion of Methanosarcinales to Methanomicrobiales in biowaste and biowaste+WBS remained constant, Methanosarcinales and in particular Methanosaeta spec. in the biowaste+RBS assay almost completely disappeared. Methanomicrobiales increased instead, indicating propionate oxidation via acetate cleavage to CO2 and hydrogen.


Subject(s)
Biofuels , Bioreactors/microbiology , Refuse Disposal/methods , Secale/chemistry , Secale/microbiology , Triticum/chemistry , Triticum/microbiology , Biodegradation, Environmental , Bread , Carbon Dioxide/chemistry , Cities , Clostridiales , Deltaproteobacteria , Fatty Acids/chemistry , Fermentation , Hydrogen/chemistry , Methane/chemistry , Methanosarcinales , Suspensions
3.
Bioengineering (Basel) ; 2(1): 35-53, 2015 Feb 09.
Article in English | MEDLINE | ID: mdl-28955012

ABSTRACT

Propionate is the most delicate intermediate during anaerobic digestion as its degradation is thermodynamically unfavorable. To determine its maximum possible degradation rates during anaerobic digestion, a reactor was fed Monday to Friday with an organic loading rate (OLR) of 12/14 kg CODbiowaste·m-3·d-1 plus propionate up to a final OLR of 18 kg COD·m-3·d-1. No feed was supplied on weekends as it was the case in full-scale. To maintain permanently high propionate oxidizing activity (POA), a basic OLR of 3 kg CODpropionate·m-3·d-1 all week + 11 kg CODbiowaste·m-3·d-1 from Monday to Friday was supplied. Finally a reactor was operated with an OLR of 12 kg CODbiowaste·m-3·d-1 from Monday to Friday and 5 kg CODpropionate·m-3·d-1 from Friday night to Monday morning to maintain a constant gas production for permanent operation of a gas engine. The propionate degradation rates (PDRs) were determined for biowaste + propionate feeding. Decreasing PDRs during starvation were analyzed. The POA was higher after propionate supply than after biowaste feeding and decreased faster during starvation of a propionate-fed rather than a biowaste-fed inoculum. Shifts of the propionate-oxidizing and methanogenic community were determined.

4.
Water Res ; 69: 243-251, 2015 Feb 01.
Article in English | MEDLINE | ID: mdl-25497174

ABSTRACT

Elimination of bacteria by ozonation in combination with charcoal or slow sand filtration for advanced sewage treatment to improve the quality of treated sewage and to reduce the potential risk for human health of receiving surface waters was investigated in pilot scale at the sewage treatment plant Eriskirch, Baden-Wuerttemberg/Germany. To determine the elimination of sewage bacteria, inflowing and leaving wastewater of different treatment processes was analysed in a culture-based approach for its content of Escherichia coli, enterococci and staphylococci and their resistance against selected antibiotics over a period of 17 month. For enterococci, single species and their antibiotic resistances were identified. In comparison to the established flocculation filtration at Eriskirch, ozonation plus charcoal or sand filtration (pilot-scale) reduced the concentrations of total and antibiotic resistant E. coli, enterococci and staphylococci. However, antibiotic resistant E. coli and staphylococci apparently survived ozone treatment better than antibiotic sensitive strains. Neither vancomycin resistant enterococci nor methicillin resistant Staphylococcus aureus (MRSA) were detected. The decreased percentage of antibiotic resistant enterococci after ozonation may be explained by a different ozone sensitivity of species: Enterococcus faecium and Enterococcus faecalis, which determined the resistance-level, seemed to be more sensitive for ozone than other Enterococcus-species. Overall, ozonation followed by charcoal or sand filtration led to 0.8-1.1 log-units less total and antibiotic resistant E. coli, enterococci and staphylococci, as compared to the respective concentrations in treated sewage by only flocculation filtration. Thus, advanced wastewater treatment by ozonation plus charcoal or sand filtration after common sewage treatment is an effective tool for further elimination of microorganisms from sewage before discharge in surface waters.


Subject(s)
Bacteria/isolation & purification , Drug Resistance, Microbial , Filtration/methods , Ozone/pharmacology , Wastewater/microbiology , Water Purification/methods , Bacteria/drug effects , Biodiversity , Colony Count, Microbial , Drug Resistance, Microbial/drug effects , Enterococcus/drug effects , Enterococcus/isolation & purification , Escherichia coli/drug effects , Escherichia coli/isolation & purification , Microbial Sensitivity Tests , Pilot Projects , Sewage/microbiology , Staphylococcus/drug effects , Staphylococcus/isolation & purification , Waste Disposal, Fluid
5.
Microb Cell Fact ; 13: 168, 2014 Nov 26.
Article in English | MEDLINE | ID: mdl-25425453

ABSTRACT

BACKGROUND: Selenium and Tellurium have many common chemical properties as both belong to group 16 of the periodic table. High toxicities of Se and Te oxyanions cause environmental problems in contaminated soils and waters. Three strains (C4, C6 and C7) of selenite reducing and nanoparticle forming aerobic bacteria which were isolated from agricultural soils of India containing high concentrations of Se were investigated after 3.5 months of freeze-storage for their resistance against the toxic oxyanion tellurite and its reduction to non toxic elemental form Te(0) as well as nanoparticles formation. RESULTS: Strains C4, C6 and C7 reduced tellurite at maximum reduction rates of 2.3, 1.5 and 2.1 mg Te (IV)/L/d, respectively and produced extracellular Te(0) nanospheres as revealed from SEM-EDX analysis. Production of extracellular Te nanospheres has been described seldom. Further, concurrent reduction of both selenite and tellurite by bacteria was examined as these toxic oxyanions are often present together in natural environments, mine tailings or wastewater from copper refining. Interestingly, bioreduction of 100 mg/L selenite in shake flasks was not much affected by the presence of 10 mg/L tellurite but tellurite reduction rate increased 13 fold with selenite in the medium. The concurrent reduction of these oxyanions resulted in rarely described bioformation of extracellular nanoparticles composed of both Se and Te, reported first time for aerobically growing heterotrophic non-halophilic bacterial cultures. Duganella violacienigra, the closely related strain to C4 was also found to be resistant to oxyanions of Se and Te. CONCLUSIONS: Selenite reducing heterotrophic non-halophilic aerobic bacteria revived from 3.5 months freeze storage could successfully reduce toxic tellurite to non toxic elemental form and produced extracellular nanospheres during detoxification. Presence of relatively less toxic selenite in the medium triggers bioreduction of more toxic tellurite leading to formation of extracellular SeTe nanospheres which are sought by solar and optical recording media industry because of their excellent photovoltaic and optical properties. The bacterial cultures investigated in this study could be exploited commercially to remediate not only selenite and tellurite-contaminated soil and water but also for green synthesis of extracellular Se, Te and Se + Te nanospheres.


Subject(s)
Bacteria , Metal Nanoparticles , Nanospheres , Selenium/metabolism , Soil Microbiology , Soil , Tellurium/metabolism , Aerobiosis/physiology , Bacteria/isolation & purification , Bacteria/metabolism
6.
Bioresour Technol ; 166: 479-84, 2014 Aug.
Article in English | MEDLINE | ID: mdl-24950093

ABSTRACT

Volatile fatty acid (VFA) metabolism and population changes during re-start of a wet anaerobic digester for treatment of biowaste suspensions were investigated. Initially acetate and propionate accumulated. However, VFA degradation rates improved within 2 weeks, reaching a balanced metabolism with constantly low VFA concentrations. The total microbial population consisted of 60% acidogenic+acetogenic and 40% methanogenic bacteria. Maximally 5.1% of all bacteria in the digester were propionate-oxidizing bacteria. Pelotomaculum species were dominant, followed by much lower numbers of Smithella species and Syntrophobacter species. Pelotomaculum and Smithella spec. decreased during acetate and propionate accumulation and recovered later on, whereas Syntrophobacter spec. was steadily increasing during start-up. A nearly constant proportion of Methanosaeta spec. was present all time, while Methanosarcina spec. decreased and Methanomicrobiales increased during accumulation and degradation of acetate and propionate. During steady state proportions as in the inoculum were obtained.


Subject(s)
Bacteria, Anaerobic/metabolism , Fatty Acids/metabolism , Waste Management/methods , Anaerobiosis , Bacteria, Anaerobic/classification , Bacteria, Anaerobic/growth & development , Biodegradation, Environmental , Biofuels , Bioreactors
7.
Bioresour Technol ; 168: 23-32, 2014 Sep.
Article in English | MEDLINE | ID: mdl-24656488

ABSTRACT

Methane production from biowaste with 20-30% dry matter (DM) by box-type dry anaerobic digestion and contributing bacteria were determined for incubation at 20, 37 and 55 °C. The same digestion efficiency as for wet anaerobic digestion of biowaste was obtained for dry anaerobic digestion with 20% DM content at 20, 37 and 55 °C and with 25% DM content at 37 and 55 °C. No or only little methane was produced in dry anaerobic reactors with 30% DM at 20, 37 or 55 °C. Population densities in the 20-30% DM-containing biowaste reactors were similar although in mesophilic and thermophilic biowaste reactors with 30% DM content significantly less but phylogenetically more diverse archaea existed. Biogas production in the 20% and 25% DM assays was catalyzed by Methanosarcinales and Methanomicrobiales. In all assays Pelotomaculum and Syntrophobacter species were dominant propionate degraders.


Subject(s)
Bacteria/metabolism , Cities , Humidity , Refuse Disposal/methods , Temperature , Waste Products , Anaerobiosis , Biodegradation, Environmental , Biofuels , Bioreactors/microbiology , Fatty Acids, Volatile/analysis , Hydrogen-Ion Concentration , In Situ Hybridization, Fluorescence , Methane
8.
Microb Cell Fact ; 12: 90, 2013 Oct 05.
Article in English | MEDLINE | ID: mdl-24093594

ABSTRACT

BACKGROUND: After cellulose and starch, chitin is the third-most abundant biopolymer on earth. Chitin or its deacetylated derivative chitosan is a valuable product with a number of applications. It is one of the main components of shrimp shells, a waste product of the fish industry. To obtain chitin from Penaeus monodon, wet and dried shrimp shells were deproteinated with two specifically enriched proteolytic cultures M1 and M2 and decalcified by in-situ lactic acid forming microorganisms. The viscosity of biologically processed chitin was compared with chemically processed chitin. The former was further investigated for purity, structure and elemental composition by several microscopic techniques and (13)C solid state NMR spectroscopy. RESULTS: About 95% of the protein of wet shrimp shells was removed by proteolytic enrichment culture M2 in 68 h. Subsequent decalcification by lactic acid bacteria (LAB) took 48 h. Deproteination of the same amount of dried shrimps that contained a 3 × higher solid content by the same culture was a little bit faster and was finished after 140 h. The viscosity of chitin was in the order of chemically processed chitin > bioprocessed chitin > commercially available chitin. Results revealed changes in fine structure and chemical composition of the epi-, exo- and endocuticle of chitin from shrimp shells during microbial deproteination and demineralization. From transmission electron microscopy (TEM) overlays and electron energy loss spectroscopy (EELS) analysis, it was found that most protein was present in the exocuticle, whereas most chitin was present in the endocuticle. The calcium content was higher in the endocuticle than in the exocuticle.13C solid state NMR spectra of different chitin confirmed < 3% impurities in the final product. CONCLUSIONS: Bioprocessing of shrimp shell waste resulted in a chitin with high purity. Its viscosity was higher than that of commercially available chitin but lower than that of chemically prepared chitin in our lab. Nevertheless, the biologically processed chitin is a promising alternative for less viscous commercially available chitin. Highly viscous chitin could be generated by our chemical method. Comprehensive structural analyses revealed the distribution of the protein and Ca matrix within the shrimp shell cuticle which might be helpful in developing shrimp waste processing techniques.


Subject(s)
Chitin/analogs & derivatives , Crustacea/chemistry , Penaeidae/chemistry , Animals , Chitin/chemistry , Chitin/metabolism , Crustacea/metabolism , Lactic Acid/metabolism , Microscopy, Electron , Penaeidae/metabolism , Proteins/metabolism , Shellfish , Viscosity
9.
J Environ Manage ; 128: 522-9, 2013 Oct 15.
Article in English | MEDLINE | ID: mdl-23831674

ABSTRACT

High strength automobile industry wastewater, collected from decanters (DECA) of the pre-treatment plant after oil, grease and sludge separation, was investigated for production of methane in the absence and presence of glucose or excess aerobic sludge (AS) from a lab scale suspension reactor as co-substrates. The highest methane production from DECA wastewater was 335.4 L CH4/kg CODsoluble removal which decreased in the presence of the co-substrates to 232.5 (with 2 g/L glucose) and to 179 (with 40% AS) L CH4/kg CODsoluble removal, respectively. Around 95% of total methane was produced within 5 days of incubation of DECA at 37 °C when no co-substrate was added. Addition of co-substrates did not improve biodegradation of DECA but overall methane production from DECA + co-substrates was increased due to co-substrate biodegradation. The anaerobic inoculum, capable of producing 2.4 mol of hydrogen/mol of glucose under zinc induced inhibitory conditions, was unable to produce hydrogen from DECA as substrate under the same conditions.


Subject(s)
Biofuels , Hydrogen/metabolism , Methane/biosynthesis , Waste Disposal, Fluid/methods , Anaerobiosis/drug effects , Automobiles , Biodegradation, Environmental , Biological Oxygen Demand Analysis , Bioreactors/microbiology , Glucose/metabolism , Industrial Waste , Sewage , Waste Disposal, Fluid/instrumentation , Wastewater/analysis , Zinc/pharmacology
10.
Ecotoxicol Environ Saf ; 91: 139-46, 2013 May.
Article in English | MEDLINE | ID: mdl-23453350

ABSTRACT

Arsenic (As) dissolution from sediments into groundwater in the Bengal Delta/West India was investigated. Two experimental sites were choosen with contrasting As concentrations in shallow groundwater. Apparently patches of high-As and low-As sediments occured in close neigbourhood. A fast As mobilization with lactate or ethanol as carbon sources and sulfate as an electron acceptor and a possible influence of indigenous flora because of higher As amounts and an increasing total cell count was observed over a peroid of 110 days. Sucrose was a less suitable carbon source. Inoculation of an arsenate-reducing Pseudomonas putida WB, that was isolated from the sediments did not improve arsenic mobilization. Maximal arsenic concentrations up to 160µg/l were leached out from sediment columns with lactate or ethanol+sulfate in the water at natural groundwater flow, but the majority of the As remained in the sandy sediments. Some correlation of arsenic with Fe, but not with Mn dissolution seems to exist.


Subject(s)
Arsenic/metabolism , Bacteria/metabolism , Carbon/chemistry , Geologic Sediments/chemistry , Geologic Sediments/microbiology , Sulfates/chemistry , Water Pollutants, Chemical/metabolism , Ethanol/metabolism , Groundwater/analysis , India , Lactic Acid/metabolism , Pseudomonas putida/metabolism
11.
J Hazard Mater ; 262: 941-50, 2013 Nov 15.
Article in English | MEDLINE | ID: mdl-23415500

ABSTRACT

Here we report temporal changes of As concentrations in shallow groundwater of the Bengal Delta Plain (BDP). Observed fluctuations are primarily induced by seasonally occurring groundwater movement, but can also be connected to anthropogenic groundwater extraction. Between December 2009 and July 2010, pronounced variations in the groundwater hydrochemistry were recorded in groundwater samples of a shallow monitoring well tapping the aquifer in 22-25 m depth, where Astot concentrations increased within weeks from 100 to 315 µg L(-1). These trends are attributed to a vertically shift of the hydrochemically stratified water column at the beginning of the monsoon season. This naturally occurring effect can be additionally superimposed by groundwater extraction, as demonstrated on a local scale by an in situ experiment simulating extensive groundwater withdrawal during the dry post-monsoon season. Results of this experiment suggest that groundwater extraction promoted an enduring change within the distribution of dissolved As in the local aquifer. Presented outcomes contribute to the discussion of anthropogenic pumping influences that endanger the limited and yet arsenic-free groundwater resources of the BDP.


Subject(s)
Arsenic/analysis , Environmental Monitoring/methods , Groundwater/chemistry , Water Pollutants, Chemical/analysis , Arsenic/chemistry , Carbon/chemistry , Climate , Geologic Sediments , Geology , India , Oxidation-Reduction , Potassium/chemistry , Rain , Seasons , Water/chemistry , Water Purification , Water Supply
12.
Appl Microbiol Biotechnol ; 97(20): 9193-205, 2013 Oct.
Article in English | MEDLINE | ID: mdl-23233207

ABSTRACT

A mixed culture from an anaerobic biowaste digester was enriched on propionate and used to investigate interspecies hydrogen transfer in dependence of spatial distances between propionate degraders and methanogens. From 20.3 mM propionate, 20.8 mM acetate and 15.5 mM methane were formed. Maximum specific propionate oxidation and methane formation rates were 49 and 23 mmol mg(-1) day(-1), respectively. Propionate oxidation was inhibited by only 20 mM acetate by about 50 %. Intermediate formate formation during inhibited methanogensis was observed. The spatial distribution and the biovolume fraction of propionate degraders and of methanogens in relation to the total population during aggregate formation were determined. Measurements of interbacterial distances were conducted with fluorescence in situ hybridization by application of group-specific 16S rRNA-targeted probes and 3D image analyses. With increasing incubation time, floc formation and growth up to 54 µm were observed. Propionate degraders and methanogens were distributed randomly in the flocs. The methanogenic biovolume fraction was high at the beginning and remained constant over 42 days, whereas the fraction of propionate degraders increased with time during propionate feeding. Interbacterial distances between propionate degraders and methanogens decreased with time from 5.30 to 0.29 µm, causing an increase of the maximum possible hydrogen flux from 1.1 to 10.3 nmol ml(-1) min(-1). The maximum possible hydrogen flux was always higher than the hydrogen formation and consumption rate, indicating that reducing the interspecies distance by aggregation is advantageous in complex ecosystems.


Subject(s)
Archaea/metabolism , Bacteria/metabolism , Hydrogen/metabolism , Methane/metabolism , Propionates/metabolism , Acetates/chemistry , Acetates/metabolism , Archaea/classification , Archaea/genetics , Archaea/growth & development , Bacteria/classification , Bacteria/genetics , Bacteria/growth & development , Biodegradation, Environmental , Hydrogen/chemistry , Kinetics , Methane/chemistry , Oxidation-Reduction , Propionates/chemistry
13.
Arch Environ Contam Toxicol ; 63(3): 354-64, 2012 Oct.
Article in English | MEDLINE | ID: mdl-22622431

ABSTRACT

Antibiotics and other pharmaceuticals are contaminants of the environment because of their widespread use and incomplete removal by microorganisms during wastewater treatment. The influence of a mixture of ciprofloxacin (CIP), gentamicin (GM), sulfamethoxazole (SMZ)/trimethoprim (TMP), and vancomycin (VA), up to a final concentration of 40 mg/L, on the elimination of chemical oxygen demand (COD), nitrification, and survival of bacteria, as well as the elimination of the antibiotics, was assessed in a long-term study in laboratory treatment plants (LTPs). In the presence of 30 mg/L antibiotics, nitrification of artificial sewage by activated sludge ended at nitrite. Nitrate formation was almost completely inhibited. No nitrification at all was possible in the presence of 40 mg/L antibiotics. The nitrifiers were more sensitive to antibiotics than heterotrophic bacteria. COD elimination in antibiotic-stressed LTPs was not influenced by ≤20 mg/L antibiotics. Addition of 30 mg/L antibiotic mixture decreased COD removal efficiency for a period, but the LTPs recovered. Similar results were obtained with 40 mg/L antibiotic mixture. The total viable count of bacteria was not affected negatively by the antibiotics. It ranged from 2.2 × 10(6) to 8.2 × 10(6) colony-forming units per milliliter (CFU/mL) compared with the control at 1.4 × 10(6)-6.3 × 10(6) CFU/mL. Elimination of the four antibiotics during phases of 2.4-30 mg/L from the liquid was high for GM (70-90 %), much lower for VA, TMP, and CIP (0-50 %), and highly fluctuating for SMZ (0-95 %). The antibiotics were mainly adsorbed to the sludge and not biodegraded.


Subject(s)
Anti-Bacterial Agents/toxicity , Bacteria/drug effects , Waste Disposal, Fluid/methods , Wastewater/microbiology , Water Pollutants, Chemical/toxicity , Anti-Bacterial Agents/analysis , Bacteria/growth & development , Bacteria/metabolism , Biodegradation, Environmental , Biological Oxygen Demand Analysis , Nitrification/drug effects , Waste Disposal, Fluid/statistics & numerical data , Wastewater/chemistry , Water Pollutants, Chemical/analysis
14.
Microb Cell Fact ; 11: 64, 2012 Jul 09.
Article in English | MEDLINE | ID: mdl-22607265

ABSTRACT

BACKGROUND: Selenium (Se) is an essential trace element, but is toxic at high concentrations. Depending upon the geological background, the land use or on anthropogenic pollution, different amounts of Se may be present in soil. Its toxicity is related to the oxyanions selenate and selenite as they are water soluble and bioavailable. Microorganisms play an important role in Se transformations in soil and its cycling in the environment by transforming water-soluble oxyanions into water insoluble, non-toxic elemental Se (0). For this study, soil samples were collected from selenium-contaminated agricultural soils of Punjab/India to enrich and isolate microbes that interacted with the Se cycle. RESULTS: A mixed microbial culture enriched from the arable soil of Punjab could reduce 230 mg/l of water soluble selenite to spherical Se (0) nanoparticles during aerobic growth as confirmed by SEM-EDX. Four pure cultures (C 1, C 4, C 6, C 7) of Gram negative, oxidase and catalase positive, aerobic bacteria were isolated from this mixed microbial consortium and identified by 16 S rDNA gene sequence alignment as two strains of Duganella sp. (C 1, C 4) and two strains of Agrobacterium sp.(C 6, C 7). SEM/TEM-EDX analyses of the culture broth of the four strains revealed excretion of uniformly round sharply contoured Se (0) nanoparticles by all cultures. Their size ranged from 140-200 nm in cultures of strains C 1 and C 4, and from 185-190 nm in cultures of strains C 6 and C 7. Both Duganella sp. revealed better selenite reduction efficiencies than the two Agrobacterium sp. CONCLUSIONS: This is the first study reporting the capability of newly isolated, aerobically growing Duganella sp. and Agrobacterium sp. from soils of Punjab/India to form spherical, regularly formed Se (0) nanoparticles from water soluble selenite. Among others, the four strains may significantly contribute to the biogeochemical cycling of Se in soil. Bioconversion of toxic selenite to non-toxic Se (0) nanoparticles under aerobic conditions in general may be useful for detoxification of agricultural soil, since elemental Se may not be taken up by the roots of plants and thus allow non-dangerous fodder and food production on Se-containing soil.


Subject(s)
Agrobacterium/metabolism , Nanoparticles , Oxalobacteraceae/metabolism , Selenium/chemistry , Agrobacterium/isolation & purification , Biodegradation, Environmental , India , Oxalobacteraceae/isolation & purification , Selenium/metabolism , Soil Microbiology
15.
Chem Biodivers ; 9(2): 376-84, 2012 Feb.
Article in English | MEDLINE | ID: mdl-22344913

ABSTRACT

Biowaste digestion is a possibility to gain biogas as a renewable fuel source. However, the anaerobic food chain may be disrupted by, e.g., substrate overload or by inhibitors, leading to the accumulation of volatile fatty acids (VFAs), predominantly of propanoic acid (PA). VFA Accumulation may cause a rapid pH decrease, less biogas production, or even a total inhibition. To maintain high biogas productivity or to prevent a collapse of methanogenesis, metabolic properties of the degrading microorganisms must be elucidated, e.g., by investigation of the established pathways for degradation of VFAs. A Dani 3950 headspace system (HS), a Varian 431 gas chromatograph (GC), and a Varian 210 mass spectrometer (MS) have been combined to quantify and specifically identify metabolites of PA oxidation. The use of [1-(13)C]-labeled PA as a carbon source for microorganisms allows differentiation between the methyl-malonyl-CoA or the C(6)-dismutation pathway, both resulting in AcOH production. Appearance of the (13)C-moiety either in the COO or Me group of AcO can easily be detected by MS. The methyl-malonyl-CoA pathway was successfully identified as the only pathway of PA degradation by organisms in a lab-scale anaerobic digester. A similar approach can be applied to any degradation pathway involving VFAs.


Subject(s)
Bacteria, Anaerobic/physiology , Bioreactors , Carbon Radioisotopes/chemistry , Fatty Acids, Volatile/analysis , Propionates/chemistry , Biodegradation, Environmental , Biofuels , Gas Chromatography-Mass Spectrometry , Oxidation-Reduction , Sewage
16.
PLoS One ; 6(11): e27615, 2011.
Article in English | MEDLINE | ID: mdl-22110692

ABSTRACT

Stenotrophomonas maltophilia is a highly versatile species with useful biotechnological potential but also with pathogenic properties. In light of possible differences in virulence characteristics, knowledge about genomic subgroups is therefore desirable. Two different genotyping methods, rep-PCR fingerprinting and partial gyrB gene sequencing were used to elucidate S. maltophilia intraspecies diversity. Rep-PCR fingerprinting revealed the presence of 12 large subgroups, while gyrB gene sequencing distinguished 10 subgroups. For 8 of them, the same strain composition was shown with both typing methods. A subset of 59 isolates representative for the gyrB groups was further investigated with regards to their pathogenic properties in a virulence model using Dictyostelium discoideum and Acanthamoeba castellanii as host organisms. A clear tendency towards accumulation of virulent strains could be observed for one group with A. castellanii and for two groups with D. discoideum. Several virulent strains did not cluster in any of the genetic groups, while other groups displayed no virulence properties at all. The amoeba pathogenicity model proved suitable in showing differences in S. maltophilia virulence. However, the model is still not sufficient to completely elucidate virulence as critical for a human host, since several strains involved in human infections did not show any virulence against amoeba.


Subject(s)
Environment , Genotyping Techniques/methods , Stenotrophomonas maltophilia/genetics , Stenotrophomonas maltophilia/pathogenicity , Amoeba/microbiology , DNA Fingerprinting , DNA Gyrase/genetics , Genetic Variation , Humans , Phenotype , Phylogeny , Polymerase Chain Reaction , Sequence Analysis, DNA , Stenotrophomonas maltophilia/classification , Stenotrophomonas maltophilia/isolation & purification
17.
J Hazard Mater ; 189(3): 640-6, 2011 May 30.
Article in English | MEDLINE | ID: mdl-21324586

ABSTRACT

Soil and groundwater samples were collected for bulk elemental analyses in particular for selenium (Se) concentrations from six agricultural sites located in states of Punjab and Haryana in North-West India. Toxic concentrations of Se (45-341 µg L(-1)) were present in groundwater (76 m deep) of Jainpur and Barwa villages in Punjab. Selenium enrichments were also found in top soil layers (0-15 cm) of Jainpur (2.3-11.6 mg kg(-1)) and Barwa (3.1 mg kg(-1)). Mineralogical analyses confirmed silicates and phyllosilicates as main components of these soils, also reflected by the high content of SiO(2) (40-62 wt.%), Al(2)O(3) (9-21 wt.%) and K(2)O (2.2-3.2 wt.%). Prevailing intensive irrigation practices in Punjab with Se enriched groundwater may be the cause of Se accumulation in soils. Sequential extraction revealed >50% Se bioavailability in Jainpur soils. Appearance of selenite was observed in some of the batch assays with soil slurries under reducing conditions. Although safe Se concentrations were found in Hisar, Haryana, yet high levels of As, Mo and U present in groundwater indicated its unsuitability for drinking purposes. Detailed biogeochemical studies of Se in sediments or groundwater of Punjab are not available so far; intensive investigations should be started for better understanding of the problem of Se toxicity.


Subject(s)
Selenium/analysis , Selenium/toxicity , Soil Pollutants/analysis , Soil Pollutants/toxicity , Water Pollutants, Chemical/analysis , Agriculture , Environmental Exposure , Environmental Monitoring/methods , Humans , India , Industrial Waste , Models, Chemical , Nails/drug effects , Nails/pathology , Sodium Selenite/analysis , Sodium Selenite/toxicity , Soil , Water/chemistry , Water Microbiology , Water Pollution
18.
Appl Microbiol Biotechnol ; 88(6): 1363-71, 2010 Dec.
Article in English | MEDLINE | ID: mdl-20821202

ABSTRACT

Anaerobic growth of a newly isolated Pseudomonas putida strain WB from an arsenic-contaminated soil in West Bengal, India on glucose, L: -lactate, and acetate required the presence of arsenate, which was reduced to arsenite. During aerobic growth in the presence of arsenite arsenate was formed. Anaerobic growth of P. putida WB on glucose was made possible presumably by the non-energy-conserving arsenate reductase ArsC with energy derived only from substrate level phosphorylation. Two moles of acetate were generated intermediarily and the reducing equivalents of glycolysis and pyruvate decarboxylation served for arsenate reduction or were released as H(2). Anaerobic growth on acetate and lactate was apparently made possible by arsenate reductase ArrA coupled to respiratory electron chain energy conservation. In the presence of arsenate, both substrates were totally oxidized to CO(2) and H(2) with part of the H(2) serving for respiratory arsenate reduction to deliver energy for growth. The growth yield for anaerobic glucose degradation to acetate was Y (Glucose) = 20 g/mol, leading to an energy coefficient of Y (ATP) = 10 g/mol adenosine-5'-triphosphate (ATP), if the Emden-Meyerhof-Parnas pathway with generation of 2 mol ATP/mol glucose was used. During growth on lactate and acetate no substrate chain phosphorylation was possible. The energy gain by reduction of arsenate was Y (Arsenate) = 6.9 g/mol, which would be little less than one ATP/mol of arsenate.


Subject(s)
Arsenates/metabolism , Hydrogen/metabolism , Pseudomonas putida/metabolism , Soil Microbiology , Water Microbiology , Acetates/metabolism , Aerobiosis , Anaerobiosis , Arsenate Reductases/metabolism , Arsenites/metabolism , Carbon Dioxide/metabolism , DNA, Bacterial/chemistry , DNA, Bacterial/genetics , DNA, Ribosomal/chemistry , DNA, Ribosomal/genetics , Glucose/metabolism , India , Lactic Acid/metabolism , Molecular Sequence Data , Oxidation-Reduction , Pseudomonas putida/growth & development , Pseudomonas putida/isolation & purification , RNA, Ribosomal, 16S/genetics , Sequence Analysis, DNA
19.
Bioresour Technol ; 101(18): 6998-7004, 2010 Sep.
Article in English | MEDLINE | ID: mdl-20400298

ABSTRACT

Co-digestion of press water from organic municipal wastes and of homogenized food residues with defibered kitchen wastes (food waste) as the main substrate was examined to improve biogas production. Although the biowaste digester was operated already at high organic loading (OLR) of 12.3 kg CODm(-3)d(-1) during the week, addition of co-substrates not only increased biogas production rates but also improved total biogas production. By feeding the two co-substrates up to 20 kg CODm(-3)d(-1) gas production followed the increasing OLR linearly. When the OLR was further increased with food waste, not more gas than for 20 kg CODm(-3)d(-1) OLR was obtained, indicating the maximum metabolic capabilities of the microbes. During weekends (no biowaste available) food waste could substitute for biowaste to maintain biogas production. Addition of press water or food waste to biowaste co-digestion resulted in more buffer capacity, allowing very high loadings without pH control.


Subject(s)
Bacteria, Anaerobic/physiology , Food Microbiology , Industrial Waste/prevention & control , Methane/metabolism , Water Microbiology , Water Pollutants, Chemical/metabolism , Water Purification/methods
20.
Bioresour Technol ; 101(14): 5159-67, 2010 Jul.
Article in English | MEDLINE | ID: mdl-20206500

ABSTRACT

In this study, a denitrifying culture was enriched in a continuously re-circulated anoxic suspension reactor fed with glucose and nitrate for about 8 months (stage I) under different organic loading rates (OLR). At the end of stage I, the removal efficiency for NO(3)(-)-N was 80% with 93% COD (5 g/l) removal at an OLR of 2.5 g/ld. The mean COD/N removal ratio during the whole enrichment was 3.3. The response to phenol as a toxic substance on glucose enriched culture for long time period was investigated by introducing phenol as a co-substrate in the reactor feed in stage II. Phenol was increased gradually to 753 mg/l till termination of the reactor operation. After increasing the OLR or the phenol concentration, fluctuations in removal efficiencies were observed which were partly reversible. At the end of the reactor operation, NO(3)(-)-N removal was 65% with 81% COD removal at a phenol degradation rate of 207 mg/ld phenol. The OLR of the reactor was 4.3g/ld COD and a hydraulic retention time (HRT) of 1 day. Phenol degradation in batch assays under anoxic conditions and at low phenol concentrations (188 mg/l) proceeded a removal rate of 1.2g/l which decreased to 0.67 mg/ld at high phenol concentration (847 mg/l).


Subject(s)
Nitrates/isolation & purification , Oxygen/chemistry , Phenol/chemistry , Water Pollutants, Chemical/isolation & purification , Anaerobiosis , Biodegradation, Environmental , Biomass , Bioreactors , Carbon/chemistry , Glucose/chemistry , Nitrates/chemistry , Nitrogen/chemistry , Waste Disposal, Fluid
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