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1.
Article in English | MEDLINE | ID: mdl-35627737

ABSTRACT

Child poverty situated in different socioeconomic and environmental contexts has long been a central concern for practitioners, researchers, and policy makers. However, concerned research studies are predominantly adult-centric, confined to specific areas, or seldom found in Asian developed economies. Against the backdrop of this research gap, this study examines children's experiences of poverty in relation to economic and material aspects, social relationships and participation, and psychological and emotional wellbeing, and their ways of coping with the effects of poverty. Using a purposive sampling method, a total of 40 children participants aged 8-14 living in or near poverty were recruited for an individual interview. The study showed that children experienced a range of deprivations in relation to falling short of the resources, opportunities, and activities that are commanded by average young persons. Limited living space also stands out as a more severe problem that is difficult to cope with. The various coping strategies include small spending savvy tactics, parental buffering, compensation, and mental coping. Proximity to schools and NGOs can help children in poverty to cope with problems caused by deprivations in different aspects. Implications for research studies and practice for working with children in or near poverty are discussed accordingly.


Subject(s)
Income , Poverty , Adaptation, Psychological , Adult , Child , Hong Kong , Humans , Poverty/psychology , Societies
2.
Mol Syst Biol ; 17(7): e10127, 2021 07.
Article in English | MEDLINE | ID: mdl-34288498

ABSTRACT

Cell-to-cell heterogeneity is a feature of the tumor necrosis factor (TNF)-stimulated inflammatory response mediated by the transcription factor NF-κB, motivating an exploration of the underlying sources of this noise. Here, we combined single-transcript measurements with computational models to study transcriptional noise at six NF-κB-regulated inflammatory genes. In the basal state, NF-κB-target genes displayed an inverse correlation between mean and noise characteristic of transcriptional bursting. By analyzing transcript distributions with a bursting model, we found that TNF primarily activated transcription by increasing burst size while maintaining burst frequency for gene promoters with relatively high basal histone 3 acetylation (AcH3) that marks open chromatin environments. For promoters with lower basal AcH3 or when AcH3 was decreased with a small molecule drug, the contribution of burst frequency to TNF activation increased. Finally, we used a mathematical model to show that TNF positive feedback amplified gene expression noise resulting from burst size-mediated transcription, leading to a subset of cells with high TNF protein expression. Our results reveal potential sources of noise underlying intercellular heterogeneity in the TNF-mediated inflammatory response.


Subject(s)
NF-kappa B , Tumor Necrosis Factor-alpha , Acetylation , Gene Expression Regulation , NF-kappa B/genetics , NF-kappa B/metabolism , Promoter Regions, Genetic , Tumor Necrosis Factor-alpha/genetics
3.
Article in English | MEDLINE | ID: mdl-30769783

ABSTRACT

Background: A prospective cohort study was conducted to follow-up on 104 participants on their changes of social, psychological and physical health as exposed to the hikikomori lifestyle. Methods: Participants were interviewed at baseline, 6 months and 12 months by administering a set of questionnaires and anthropometric measurements. Results: All three health domains of hikikomori were significantly improved over the follow-up period as evidenced by: (1) increased social network scores from 2.79 ± 1.80 to 3.09 ± 1.87, (2) decreased perceived stress scores from 21.18 ± 5.87 to 20.11 ± 5.79, and (3) reduced blood pressure levels from 118/75 to 115/71 and waist-to-hip ratios. Almost half of the participants have recovered from hikikomori by returning to the workforce in society; however, the health improvements were dominant in those that remained as hikikomori and were associated with the gradual swapping of exercise practices from light to moderate level strength. Conclusions: With intended exposure to social worker engagement, physical assessments of the cohort study triggered the social workers to encourage participants to do more exercises, which in turn enhanced their awareness of health modification towards a better health. Engagement of social workers could be considered as part of the intended exposure for all participants, which suggested social work intervention was effective in helping hikikomori recovery.


Subject(s)
Asian People/psychology , Attitude to Health , Health Status , Life Style , Social Isolation/psychology , Adolescent , Adult , Cohort Studies , Female , Follow-Up Studies , Hong Kong , Humans , Male , Prospective Studies , Surveys and Questionnaires , Time Factors , Young Adult
4.
Biophys J ; 116(4): 709-724, 2019 02 19.
Article in English | MEDLINE | ID: mdl-30704857

ABSTRACT

The transcription factor nuclear factor (NF)-κB promotes inflammatory and stress-responsive gene transcription across a range of cell types in response to the cytokine tumor necrosis factor (TNF). Although NF-κB signaling exhibits significant variability across single cells, some target genes supporting high levels of TNF-inducible transcription exhibit fold-change detection of NF-κB, which may buffer against stochastic variation in signaling molecules. It is unknown whether fold-change detection is maintained at NF-κB target genes with low levels of TNF-inducible transcription, for which stochastic promoter events may be more pronounced. Here, we used a microfluidic cell-trapping device to measure how TNF-induced activation of NF-κB controls transcription in single Jurkat T cells at the promoters of integrated HIV and the endogenous cytokine gene IL6, which produce only a few transcripts per cell. We tracked TNF-stimulated NF-κB RelA nuclear translocation by live-cell imaging and then quantified transcript number by RNA FISH in the same cell. We found that TNF-induced transcript abundance at 2 h for low- and high-abundance target genes correlates with similar strength with the fold change in nuclear NF-κB. A computational model of TNF-NF-κB signaling, which implements fold-change detection from competition for binding to κB motifs, could reproduce fold-change detection across the experimentally measured range of transcript outputs. However, multiple model parameters affecting transcription had to be simultaneously varied across promoters to maintain fold-change detection while also matching other trends in the single-cell data for low-abundance transcripts. Our results suggest that cells use multiple biological mechanisms to tune transcriptional output while maintaining robustness of NF-κB fold-change detection.


Subject(s)
Transcription Factor RelA/metabolism , Humans , Jurkat Cells , Lab-On-A-Chip Devices , Models, Biological , RNA, Messenger/genetics , Signal Transduction/drug effects , Signal Transduction/genetics , Single-Cell Analysis , Transcription, Genetic/drug effects , Tumor Necrosis Factor-alpha/metabolism , Tumor Necrosis Factor-alpha/pharmacology
5.
Article in English | MEDLINE | ID: mdl-29439488

ABSTRACT

A cross-sectional study was designed to understand the impacts of "hikikomori" lifestyle on physical health. A total of 104 eligible hikikomori cases were recruited from the social services network of Hong Kong with a mean age of 19.02 ± 3.62 (ranged 13-31) year-old, and had completed the set of questionnaires and a series of anthropometric and physical health measurements. Despite SF36 score of 84.0 indicated good physical functioning in general, participants were lived sedentarily with high incidence of hypertension at 15.4% and prehypertension at 31.7%. Occurrence of hypertension and prehypertension in cases living as hikikomori >6 months were 3 times and 1.5 times higher than those newly onset cases, respectively. The blood pressure levels were correlated with age and all obesity index parameters measured including waist circumference and body mass index. Results also observed a shift of body weight from underweight to overweight and obesity along the hikikomori duration. Half of the hypertensive cases involved the elevation of systolic blood pressure, which suggested higher odds of cardiovascular complications. In conclusion, the hikikomori lifestyle could be a risk behavior that may harm the younger generation physically by promoting obesity and hypertension and probably other chronic illnesses.


Subject(s)
Health Status , Life Style , Social Isolation , Adolescent , Adult , Blood Pressure , Body Weights and Measures , Cross-Sectional Studies , Female , Hong Kong/epidemiology , Humans , Hypertension/epidemiology , Male , Prehypertension/epidemiology , Surveys and Questionnaires , Young Adult
6.
Cell Rep ; 22(3): 585-599, 2018 01 16.
Article in English | MEDLINE | ID: mdl-29346759

ABSTRACT

Noisy gene expression generates diverse phenotypes, but little is known about mechanisms that modulate noise. Combining experiments and modeling, we studied how tumor necrosis factor (TNF) initiates noisy expression of latent HIV via the transcription factor nuclear factor κB (NF-κB) and how the HIV genomic integration site modulates noise to generate divergent (low-versus-high) phenotypes of viral activation. We show that TNF-induced transcriptional noise varies more than mean transcript number and that amplification of this noise explains low-versus-high viral activation. For a given integration site, live-cell imaging shows that NF-κB activation correlates with viral activation, but across integration sites, NF-κB activation cannot account for differences in transcriptional noise and phenotypes. Instead, differences in transcriptional noise are associated with differences in chromatin state and RNA polymerase II regulation. We conclude that, whereas NF-κB regulates transcript abundance in each cell, the chromatin environment modulates noise in the population to support diverse HIV activation in response to TNF.


Subject(s)
NF-kappa B/genetics , Promoter Regions, Genetic/genetics , Transcriptional Activation/genetics , Humans , Phenotype
7.
Nucleic Acids Res ; 44(1): 198-209, 2016 Jan 08.
Article in English | MEDLINE | ID: mdl-26420831

ABSTRACT

Many carcinogens damage both DNA and protein constituents of chromatin, and it is unclear how cells respond to this compound injury. We examined activation of the main DNA damage-responsive kinase ATM and formation of DNA double-strand breaks (DSB) by formaldehyde (FA) that forms histone adducts and replication-blocking DNA-protein crosslinks (DPC). We found that low FA doses caused a strong and rapid activation of ATM signaling in human cells, which was ATR-independent and restricted to S-phase. High FA doses inactivated ATM via its covalent dimerization and formation of larger crosslinks. FA-induced ATM signaling showed higher CHK2 phosphorylation but much lower phospho-KAP1 relative to DSB inducers. Replication blockage by DPC did not produce damaged forks or detectable amounts of DSB during the main wave of ATM activation, which did not require MRE11. Chromatin-monitoring KAT5 (Tip60) acetyltransferase was responsible for acetylation and activation of ATM by FA. KAT5 and ATM were equally important for triggering of intra-S-phase checkpoint and ATM signaling promoted recovery of normal human cells after low-dose FA. Our results revealed a major role of the KAT5-ATM axis in protection of replicating chromatin against damage by the endogenous carcinogen FA.


Subject(s)
Ataxia Telangiectasia Mutated Proteins/metabolism , Chromatin/genetics , Chromatin/metabolism , DNA Damage/drug effects , DNA Replication , Formaldehyde/toxicity , Histone Acetyltransferases/metabolism , Carcinogens/toxicity , Cell Line , Enzyme Activation/drug effects , Humans , Lysine Acetyltransferase 5 , S Phase , Signal Transduction/drug effects
8.
Sci Rep ; 5: 17661, 2015 Dec 15.
Article in English | MEDLINE | ID: mdl-26666681

ABSTRACT

Latent human immunodeficiency virus (HIV) infections occur when the virus occupies a transcriptionally silent but reversible state, presenting a major obstacle to cure. There is experimental evidence that random fluctuations in gene expression, when coupled to the strong positive feedback encoded by the HIV genetic circuit, act as a 'molecular switch' controlling cell fate, i.e., viral replication versus latency. Here, we implemented a stochastic computational modeling approach to explore how different promoter activation mechanisms in the presence of positive feedback would affect noise-driven activation from latency. We modeled the HIV promoter as existing in one, two, or three states that are representative of increasingly complex mechanisms of promoter repression underlying latency. We demonstrate that two-state and three-state models are associated with greater variability in noisy activation behaviors, and we find that Fano factor (defined as variance over mean) proves to be a useful noise metric to compare variability across model structures and parameter values. Finally, we show how three-state promoter models can be used to qualitatively describe complex reactivation phenotypes in response to therapeutic perturbations that we observe experimentally. Ultimately, our analysis suggests that multi-state models more accurately reflect observed heterogeneous reactivation and may be better suited to evaluate how noise affects viral clearance.


Subject(s)
Gene Expression Regulation, Viral , HIV Infections/virology , HIV-1/physiology , Promoter Regions, Genetic , Transcriptional Activation , Virus Activation/genetics , Virus Latency , Humans , Models, Biological , Transcription, Genetic , tat Gene Products, Human Immunodeficiency Virus/metabolism
9.
Integr Biol (Camb) ; 7(9): 998-1010, 2015 Sep.
Article in English | MEDLINE | ID: mdl-26138068

ABSTRACT

Quantifying cell-to-cell variability in drug response dynamics is important when evaluating therapeutic efficacy. For example, optimizing latency reversing agents (LRAs) for use in a clinical "activate-and-kill" strategy to purge the latent HIV reservoir in patients requires minimizing heterogeneous viral activation dynamics. To evaluate how heterogeneity in latent HIV activation varies across a range of LRAs, we tracked drug-induced response dynamics in single cells via live-cell imaging using a latent HIV-GFP reporter virus in a clonal Jurkat T cell line. To enable these studies in suspension cells, we designed a simple method to capture an array of single Jurkat T cells using a passive-flow microfluidic device. Our device, which does not require external pumps or tubing, can trap hundreds of cells within minutes with a high retention rate over 12 hours of imaging. Using this device, we quantified heterogeneity in viral activation stimulated by transcription factor (TF) activators and histone deacetylase (HDAC) inhibitors. Generally, TF activators resulted in both faster onset of viral activation and faster rates of production, while HDAC inhibitors resulted in more uniform onset times, but more heterogeneous rates of production. Finally, we demonstrated that while onset time of viral gene expression and rate of viral production together predict total HIV activation, rate and onset time were not correlated within the same individual cell, suggesting that these features are regulated independently. Overall, our results reveal drug-specific patterns of noisy HIV activation dynamics not previously identified in static single-cell assays, which may require consideration for the most effective activate-and-kill regime.


Subject(s)
Cell Separation/instrumentation , HIV/physiology , HIV/ultrastructure , Histone Deacetylase Inhibitors/administration & dosage , Lab-On-A-Chip Devices , Virus Activation/physiology , Biological Assay/instrumentation , Equipment Design , Equipment Failure Analysis , Flow Injection Analysis/instrumentation , HIV/drug effects , Humans , Jurkat Cells , Microscopy, Fluorescence/instrumentation , Tissue Array Analysis/instrumentation , Virus Activation/drug effects , Virus Latency
10.
J Bone Joint Surg Am ; 97(13): 1101-11, 2015 Jul 01.
Article in English | MEDLINE | ID: mdl-26135077

ABSTRACT

➤ Heterotopic ossification occurs most commonly after joint arthroplasty, spinal cord injury, traumatic brain injury, blast trauma, elbow and acetabular fractures, and thermal injury.➤ The conversion of progenitor cells to osteogenic precursor cells as a result of cell-mediated interactions with the local tissue environment is affected by oxygen tension, pH, availability of micronutrients, and mechanical stimuli, and leads to heterotopic ossification.➤ Radiation and certain nonsteroidal anti-inflammatory medications are important methods of prophylaxis against heterotopic ossification.➤ Well-planned surgical excision can improve patient outcomes regardless of the joint involved or the initial cause of injury.➤ Future therapeutic strategies are focused on targeted inhibition of local factors and signaling pathways that catalyze ectopic bone formation.


Subject(s)
Ossification, Heterotopic , Anti-Inflammatory Agents, Non-Steroidal/therapeutic use , Arthroplasty/adverse effects , Bone Density Conservation Agents/therapeutic use , Humans , Ossification, Heterotopic/diagnosis , Ossification, Heterotopic/etiology , Ossification, Heterotopic/therapy , Risk Factors , Wounds and Injuries/complications
11.
Dev Biol ; 400(2): 202-9, 2015 Apr 15.
Article in English | MEDLINE | ID: mdl-25722188

ABSTRACT

BMP signaling mediated by ACVR1 plays a critical role for development of multiple structures including the cardiovascular and skeletal systems. While deficient ACVR1 signaling impairs normal embryonic development, hyperactive ACVR1 function (R206H in humans and Q207D mutation in mice, ca-ACVR1) results in formation of heterotopic ossification (HO). We developed a mouse line, which conditionally expresses ca-ACVR1 with Nfatc1-Cre(+) transgene. Mutant mice developed ectopic cartilage and bone at the distal joints of the extremities including the interphalangeal joints and hind limb ankles as early as P4 in the absence of trauma or exogenous bone morphogenetic protein (BMP) administration. Micro-CT showed that even at later time points (up to P40), cartilage and bone development persisted at the affected joints most prominently in the ankle. Interestingly, this phenotype was not present in areas of bone outside of the joints - tibia are normal in mutants and littermate controls away from the ankle. These findings demonstrate that this model may allow for further studies of heterotopic ossification, which does not require the use of stem cells, direct trauma or activation with exogenous Cre gene administration.


Subject(s)
Bone Morphogenetic Protein Receptors/metabolism , Disease Models, Animal , Ossification, Heterotopic/genetics , Signal Transduction , Activin Receptors, Type I/genetics , Animals , Mice , Mutation , NFATC Transcription Factors , Osteoblasts/metabolism , Osteogenesis
12.
Cell Mol Bioeng ; 7(3): 320-333, 2014 Sep 01.
Article in English | MEDLINE | ID: mdl-26191086

ABSTRACT

Human immunodeficiency virus 1 (HIV) latency remains a significant obstacle to curing infected patients. One promising therapeutic strategy is to purge the latent cellular reservoir by activating latent HIV with latency-reversing agents (LRAs). In some cases, co-drugging with multiple LRAs is necessary to activate latent infections, but few studies have established quantitative criteria for determining when co-drugging is required. Here we systematically quantified drug interactions between histone deacetylase inhibitors and transcriptional activators of HIV and found that the need for co-drugging is determined by the proximity of latent infections to the chromatin-regulated viral gene activation threshold at the viral promoter. Our results suggest two classes of latent viral integrations: those far from the activation threshold that benefit from co-drugging, and those close to the threshold that are efficiently activated by a single drug. Using a primary T cell model of latency, we further demonstrated that the requirement for co-drugging was donor dependent, suggesting that the host may set the level of repression of latent infections. Finally, we showed that single drug or co-drugging doses could be optimized, via repeat stimulations, to minimize unwanted side effects while maintaining robust viral activation. Our results motivate further study of patient-specific latency-reversing strategies.

13.
Toxicol Appl Pharmacol ; 269(3): 233-9, 2013 Jun 15.
Article in English | MEDLINE | ID: mdl-23566959

ABSTRACT

Hypoxia mimic nickel(II) is a human respiratory carcinogen with a suspected epigenetic mode of action. We examined whether Ni(II) elicits a toxicologically significant activation of the tumor suppressor p53, which is typically associated with genotoxic responses. We found that treatments of H460 human lung epithelial cells with NiCl2 caused activating phosphorylation at p53-Ser15, accumulation of p53 protein and depletion of its inhibitor MDM4 (HDMX). Confirming the activation of p53, its knockdown suppressed the ability of Ni(II) to upregulate MDM2 and p21 (CDKN1A). Unlike DNA damage, induction of GADD45A by Ni(II) was p53-independent. Ni(II) also increased p53-Ser15 phosphorylation and p21 expression in normal human lung fibroblasts. Although Ni(II)-induced stabilization of HIF-1α occurred earlier, it had no effect on p53 accumulation and Ser15 phosphorylation. Ni(II)-treated H460 cells showed no evidence of necrosis and their apoptosis and clonogenic death were suppressed by p53 knockdown. The apoptotic role of p53 involved a transcription-dependent program triggering the initiator caspase 9 and its downstream executioner caspase 3. Two most prominently upregulated proapoptotic genes by Ni(II) were PUMA and NOXA but only PUMA induction required p53. Knockdown of p53 also led to derepression of antiapoptotic MCL1 in Ni(II)-treated cells. Overall, our results indicate that p53 plays a major role in apoptotic death of human lung cells by Ni(II). Chronic exposure to Ni(II) may promote selection of resistant cells with inactivated p53, providing an explanation for the origin of p53 mutations by this epigenetic carcinogen.


Subject(s)
Apoptosis/drug effects , Caspase 3/drug effects , Caspase 9/drug effects , Hypoxia-Inducible Factor 1, alpha Subunit/physiology , Lung/drug effects , Nickel/toxicity , Tumor Suppressor Protein p53/drug effects , Blotting, Western , Caspase 3/physiology , Caspase 9/physiology , Cell Line , DNA Damage/drug effects , Gene Knockdown Techniques , Humans , Lung/cytology
14.
J Burn Care Res ; 34(2): 219-26, 2013.
Article in English | MEDLINE | ID: mdl-23370993

ABSTRACT

The use of fat grafting as a treatment for radiation and thermal injury is a recent application of a historically well-described operation. The autologous transplantation of fat has been used to treat reconstructive and cosmetic concerns for the past century. In those suffering from tissue fibrosis, contractures, and deformity, the importance of fat grafting is exaggerated because of the relative paucity of alternative solutions. Adipocytes recently have been popularized for their ability to regenerate and transform. Although large-scale randomized studies have not been performed to examine the effects of autologous fat transfer in patients suffering from thermal injury and tissue damage, smaller in vivo and in vitro studies have demonstrated reliable and reproducible improvements in tissue quality after fat grafting has been performed. The goal of this review of fat grafting in thermal injury is to describe the development of this technique from its historical roots to its current state using in vivo and in vitro models, to delineate the clinical indications for use, to describe variations in techniques, and to shed light on future applications of this seemingly simple, yet multifaceted management strategy.


Subject(s)
Adipose Tissue/transplantation , Burns/surgery , Surgery, Plastic/methods , Adipose Tissue/cytology , Animals , Disease Models, Animal , Graft Survival , Humans , Transplantation, Autologous
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