Generative-Adversarial-Network-Based Image Reconstruction for the Capacitively Coupled Electrical Impedance Tomography of Stroke.

This study investigated the potential of machine-learning-based stroke image reconstruction in capacitively coupled electrical impedance tomography. The quality of brain images reconstructed using the adversarial neural network (cGAN) was examined. The big data required for supervised network training were generated using a two-dimensional numerical simulation. The phantom of an axial cross-section of the head without and with impact lesions was an average of a three-centimeter-thick layer corresponding to the height of the sensing electrodes. Stroke was modeled using regions with characteristic electrical parameters for tissues with reduced perfusion. The head phantom included skin, skull bone, white matter, gray matter, and cerebrospinal fluid. The coupling capacitance was taken into account in the 16-electrode capacitive sensor model. A dedicated ECTsim toolkit for Matlab was used to solve the forward problem and simulate measurements. A conditional generative adversarial network (cGAN) was trained using a numerically generated dataset containing samples corresponding to healthy patients and patients affected by either hemorrhagic or ischemic stroke. The validation showed that the quality of images obtained using supervised learning and cGAN was promising. It is possible to visually distinguish when the image corresponds to the patient affected by stroke, and changes caused by hemorrhagic stroke are the most visible. The continuation of work towards image reconstruction for measurements of physical phantoms is justified.

Image Reconstruction Using Supervised Learning in Wearable Electrical Impedance Tomography of the Thorax.

Electrical impedance tomography (EIT) is a non-invasive technique for visualizing the internal structure of a human body. Capacitively coupled electrical impedance tomography (CCEIT) is a new contactless EIT technique that can potentially be used as a wearable device. Recent studies have shown that a machine learning-based approach is very promising for EIT image reconstruction. Most of the studies concern models containing up to 22 electrodes and focus on using different artificial neural network models, from simple shallow networks to complex convolutional networks. However, the use of convolutional networks in image reconstruction with a higher number of electrodes requires further investigation. In this work, two different architectures of artificial networks were used for CCEIT image reconstruction: a fully connected deep neural network and a conditional generative adversarial network (cGAN). The training dataset was generated by the numerical simulation of a thorax phantom with healthy and illness-affected lungs. Three kinds of illnesses, pneumothorax, pleural effusion, and hydropneumothorax, were modeled using the electrical properties of the tissues. The thorax phantom included the heart, aorta, spine, and lungs. The sensor with 32 area electrodes was used in the numerical model. The ECTsim custom-designed toolbox for Matlab was used to solve the forward problem and measurement simulation. Two artificial neural networks were trained with supervision for image reconstruction. Reconstruction quality was compared between those networks and one-step algebraic reconstruction methods such as linear back projection and pseudoinverse with Tikhonov regularization. This evaluation was based on pixel-to-pixel metrics such as root-mean-square error, structural similarity index, 2D correlation coefficient, and peak signal-to-noise ratio. Additionally, the diagnostic value measured by the ROC AUC metric was used to assess the image quality. The results showed that obtaining information about regional lung function (regions affected by pneumothorax or pleural effusion) is possible using image reconstruction based on supervised learning and deep neural networks in EIT. The results obtained using cGAN are strongly better than those obtained using a fully connected network, especially in the case of noisy measurement data. However, diagnostic value estimation showed that even algebraic methods allow us to obtain satisfactory results.

The Hybrid System for the Magnetic Characterization of Superparamagnetic Nanoparticles.

The characterization of nanoparticles is crucial in several medical applications, such as hyperthermic therapy, which heats superparamagnetic nanoparticles with an external electromagnetic field. The knowledge of heating ability (magnetic losses) in AC magnetic field frequency function allows for selecting the optimal excitation. A hybrid system for the characterization of superparamagnetic nanoparticles was designed and tested. The proposed setup consists of an excitation coil and two sensing probes: calorimetric and magnetic. The measurements of the imaginary part of the complex magnetic susceptibility of superparamagnetic nanoparticles are possible in the kilohertz range. The system was verified using a set of nanoparticles with different diameters. The measurement procedure was described and verified. The results confirmed that an elaborated sensor system and measuring procedures could properly characterize the magnetic characteristics of nanoparticles. The main advantage of this system is the ability to compare both characteristics and confirm the selection of optimal excitation parameters.

Performance of an openEHR based hospital information system.

BACKGROUND: A desirable feature of hospital information systems is interoperability, which is generally quite limited due to the lack of standardization of the data model. This results in high development and maintenance costs for such systems. The openEHR standard addresses this problem. Due to its two-level modelling, it allows the separation of demographic and medical data and the storage of this data so that it can be easily processed and exchanged. However, it introduces an additional software layer that may affect system performance. This article examines the performance of a system based on the openEHR standard and compares it with the performance of a proprietary system developed in a classic way. METHODS: Two hospital information systems with the same functionality were designed and developed. One was based on an openEHR server, and another was using proprietary data model having both demographic and medical data. Systems were deployed on Azure platform and load tests using JMeter were conducted to calculate statistics of elapsed time of requests as well as throughput of both systems. RESULTS: Endpoints which fetch only demographic data had the same performance, but when medical data had to be queried, a decrease in performance of the openEHR based system was noticed. The system based on a proprietary data had about 6 times bigger throughput in terms of medical data fetching. CONCLUSIONS: OpenEHR adds another layer to the architecture of a hospital information system which might result in performance issues. Such a system must be designed to operate on a sufficiently strong architecture if it is intended to serve many users.

Social adaptation in multi-agent model of linguistic categorization is affected by network information flow.

This paper explores how information flow properties of a network affect the formation of categories shared between individuals, who are communicating through that network. Our work is based on the established multi-agent model of the emergence of linguistic categories grounded in external environment. We study how network information propagation efficiency and the direction of information flow affect categorization by performing simulations with idealized network topologies optimizing certain network centrality measures. We measure dynamic social adaptation when either network topology or environment is subject to change during the experiment, and the system has to adapt to new conditions. We find that both decentralized network topology efficient in information propagation and the presence of central authority (information flow from the center to peripheries) are beneficial for the formation of global agreement between agents. Systems with central authority cope well with network topology change, but are less robust in the case of environment change. These findings help to understand which network properties affect processes of social adaptation. They are important to inform the debate on the advantages and disadvantages of centralized systems.

3D-GNOME: an integrated web service for structural modeling of the 3D genome.

Recent advances in high-throughput chromosome conformation capture (3C) technology, such as Hi-C and ChIA-PET, have demonstrated the importance of 3D genome organization in development, cell differentiation and transcriptional regulation. There is now a widespread need for computational tools to generate and analyze 3D structural models from 3C data. Here we introduce our 3D GeNOme Modeling Engine (3D-GNOME), a web service which generates 3D structures from 3C data and provides tools to visually inspect and annotate the resulting structures, in addition to a variety of statistical plots and heatmaps which characterize the selected genomic region. Users submit a bedpe (paired-end BED format) file containing the locations and strengths of long range contact points, and 3D-GNOME simulates the structure and provides a convenient user interface for further analysis. Alternatively, a user may generate structures using published ChIA-PET data for the GM12878 cell line by simply specifying a genomic region of interest. 3D-GNOME is freely available at http://3dgnome.cent.uw.edu.pl/.