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1.
J Food Prot ; 84(12): 2092-2098, 2021 12 01.
Article in English | MEDLINE | ID: mdl-34324675

ABSTRACT

ABSTRACT: Human norovirus (HuNoV) is the leading cause of foodborne illness outbreaks and the second most common cause of waterborne infections in the United States. The goal of this research was to investigate the antiviral activity of chitosan microparticles (CMs) against HuNoV GII.4 Sydney and its cultivable surrogate Tulane virus (TuV) in suspensions mimicking fecally contaminated water. CMs were prepared by cross-linking chitosan molecules with sodium sulfate, and the antiviral activity of CMs was assessed with an infectivity assay on TuV and by quantitative reverse transcription PCR on TuV and HuNoV. A 3% CM suspension in phosphate-buffered saline (pH 7.2) bound to TuV particles but had a negligible impact on virus infectivity (P > 0.05). A 10-min contact time resulted in a 1.5-log reduction in genomic copies per mL of TuV and HuNoV in fecal suspensions (P < 0.05). Despite the negligible impact on viral infectivity, CMs can moderately bind to infectious virus particles and help purify environmental water by removing these particles. In this study, TuV was a suitable surrogate for HuNoV with similar log reductions in fecal suspension. These findings highlight the potential application of CM as a novel treatment to minimize the spread of waterborne viral pathogens.


Subject(s)
Chitosan , Foodborne Diseases , Norovirus , Feces , Humans , Norovirus/genetics , Real-Time Polymerase Chain Reaction
2.
Appl Environ Microbiol ; 82(14): 4100-4111, 2016 07 15.
Article in English | MEDLINE | ID: mdl-27129962

ABSTRACT

UNLABELLED: Recurrent outbreaks of bacterial gastroenteritis linked to the consumption of fresh fruits and vegetables highlight the paucity of understanding of the ecology of Salmonella enterica under crop production and postharvest conditions. These gaps in knowledge are due, at least in part, to the lack of suitable surrogate organisms for studies for which biosafety level 2 is problematic. Therefore, we constructed and validated an avirulent strain of Salmonella enterica serovar Typhimurium. The strain lacks major Salmonella pathogenicity islands SPI-1, SPI-2, SPI-3, SPI-4, and SPI-5 as well as the virulence plasmid pSLT. Deletions and the absence of genomic rearrangements were confirmed by genomic sequencing, and the surrogate behaved like the parental wild-type strain on selective media. A loss-of-function (phoN) selective marker allowed the differentiation of this strain from wild-type strains on a medium containing a chromogenic substrate for alkaline phosphatase. Lack of virulence was confirmed by oral infection of female BALB/c mice. The strain persisted in tomatoes, cantaloupes, leafy greens, and soil with the same kinetics as the parental wild-type and selected outbreak strains, and it reached similar final population levels. The responses of this strain to heat treatment and disinfectants were similar to those of the wild type, supporting its potential as a surrogate for future studies on the ecology and survival of Salmonella in production and processing environments. IMPORTANCE: There is significant interest in understanding the ecology of human pathogens in environments outside of their animal hosts, including the crop production environment. However, manipulative field experiments with virulent human pathogens are unlikely to receive regulatory approval due to the obvious risks. Therefore, we constructed an avirulent strain of S. enterica serovar Typhimurium and characterized it extensively.


Subject(s)
Food Microbiology/methods , Fruit/microbiology , Salmonella typhimurium/growth & development , Salmonella typhimurium/pathogenicity , Vegetables/microbiology , Animals , Disease Models, Animal , Genomic Islands , Mice, Inbred BALB C , Salmonella Infections/microbiology , Salmonella Infections/pathology , Salmonella typhimurium/genetics , Salmonella typhimurium/isolation & purification , Sequence Deletion , Soil Microbiology , Virulence
3.
Appl Environ Microbiol ; 82(1): 328-39, 2016 01 01.
Article in English | MEDLINE | ID: mdl-26497459

ABSTRACT

Although Salmonella has been isolated from 7.4 to 8.6% of domestic raw oysters, representing a significant risk for food-borne illness, little is known about the factors that influence their initial colonization by Salmonella. This study tested the hypothesis that specific regulatory changes enable a portion of the invading Salmonella population to colonize oysters. An in vivo promoter probe library screen identified 19 unique regions as regulated during colonization. The mutants in the nearest corresponding downstream genes were tested for colonization defects in oysters. Only one mutation, in ssrB, resulted in a significantly reduced ability to colonize oysters compared to that of wild-type Salmonella. Because ssrB regulates Salmonella pathogenicity island 2 (SPI-2)-dependent infections in vertebrate macrophages, the possibility that ssrB mediated colonization of oyster hemocytes in a similar manner was examined. However, no difference in hemocyte colonization was observed. The complementary hypothesis that signal exchange between Salmonella and the oyster's native microbial community aids colonization was also tested. Signals that triggered responses in quorum sensing (QS) reporters were shown to be produced by oyster-associated bacteria and present in oyster tissue. However, no evidence for signal exchange was observed in vivo. The sdiA reporter responded to salinity, suggesting that SdiA may also have a role in environmental sensing. Overall, this study suggests the initial colonization of live oysters by Salmonella is controlled by a limited number of regulators, including ssrB.


Subject(s)
Crassostrea/microbiology , Promoter Regions, Genetic , Salmonella typhimurium/growth & development , Shellfish , Animals , Bacterial Proteins/genetics , Bacterial Proteins/metabolism , Gene Expression Regulation, Bacterial , Genomic Islands/genetics , Hemocytes/microbiology , Humans , Microbial Consortia/physiology , Quorum Sensing/genetics , Salmonella typhimurium/genetics , Serogroup , Trans-Activators/genetics , Transcription Factors/genetics , Transcription Factors/metabolism , Virulence Factors/genetics
4.
Appl Environ Microbiol ; 81(13): 4376-87, 2015 Jul.
Article in English | MEDLINE | ID: mdl-25911476

ABSTRACT

Irrigation water has been implicated as a likely source of produce contamination by Salmonella enterica. Therefore, the distribution of S. enterica was surveyed monthly in irrigation ponds (n = 10) located within a prime agricultural region in southern Georgia and northern Florida. All ponds and 28.2% of all samples (n = 635) were positive for Salmonella, with an overall geometric mean concentration (0.26 most probable number [MPN]/liter) that was relatively low compared to prior reports for rivers in this region. Salmonella peaks were seasonal; the levels correlated with increased temperature and rainfall (P < 0.05). The numbers and occurrence were significantly higher in water (0.32 MPN/liter and 37% of samples) than in sediment (0.22 MPN/liter and 17% of samples) but did not vary with depth. Representative isolates (n = 185) from different ponds, sample types, and seasons were examined for resistance to 15 different antibiotics; most strains were resistant to streptomycin (98.9%), while 20% were multidrug resistant (MDR) for 2 to 6 antibiotics. DiversiLab repetitive extragenic palindromic-element sequence-based PCR (rep-PCR) revealed genetic diversity and showed 43 genotypes among 191 isolates, as defined by >95% similarity. The genotypes did not partition by pond, season, or sample type. Genetic similarity to known serotypes indicated Hadar, Montevideo, and Newport as the most prevalent. All ponds achieved the current safety standards for generic Escherichia coli in agricultural water, and regression modeling showed that the E. coli level was a significant predictor for the probability of Salmonella occurrence. However, persistent populations of Salmonella were widely distributed in irrigation ponds, and the associated risks for produce contamination and subsequent human exposure are unknown, supporting continued surveillance of this pathogen in agricultural settings.


Subject(s)
Agricultural Irrigation , Ponds/microbiology , Salmonella enterica/isolation & purification , Anti-Bacterial Agents/pharmacology , Bacterial Load , Drug Resistance, Bacterial , Florida , Genetic Variation , Genotype , Georgia , Microbial Sensitivity Tests , Molecular Typing , Salmonella enterica/classification , Salmonella enterica/drug effects , Salmonella enterica/genetics , Seasons
5.
Appl Environ Microbiol ; 81(2): 640-7, 2015 Jan.
Article in English | MEDLINE | ID: mdl-25381244

ABSTRACT

Human Vibrio infections associated with consumption of raw shellfish greatly impact the seafood industry. Vibrio cholerae-related disease is occasionally attributed to seafood, but V. vulnificus and V. parahaemolyticus are the primary targets of postharvest processing (PHP) efforts in the United States, as they pose the greatest threat to the industry. Most successful PHP treatments for Vibrio reduction also kill the molluscs and are not suitable for the lucrative half-shell market, while nonlethal practices are generally less effective. Therefore, novel intervention strategies for Vibrio reduction are needed for live oyster products. Chitosan is a bioactive derivative of chitin that is generally recognized as safe as a food additive by the FDA, and chitosan microparticles (CMs) were investigated in the present study as a potential PHP treatment for live oyster applications. Treatment of broth cultures with 0.5% (wt/vol) CMs resulted in growth cessation of V. cholerae, V. vulnificus, and V. parahaemolyticus, reducing culturable levels to nondetectable amounts after 3 h in three independent experiments. Furthermore, a similar treatment in artificial seawater at 4, 25, and 37°C reduced V. vulnificus levels by ca. 7 log CFU/ml after 24 h of exposure, but 48 h of exposure and elevated temperature were required to achieve similar results for V. parahaemolyticus and V. cholerae. Live oysters that either were artificially inoculated or contained natural populations of V. vulnificus and V. parahaemolyticus showed significant and consistent reductions following CM treatment (5%) compared to the amounts in the untreated controls. Thus, the results strongly support the promising potential for the application of CMs as a PHP treatment to reduce Vibrio spp. in intact live oysters.


Subject(s)
Anti-Infective Agents/metabolism , Chitosan/metabolism , Crassostrea/microbiology , Seawater/microbiology , Vibrio cholerae/drug effects , Vibrio parahaemolyticus/drug effects , Vibrio vulnificus/drug effects , Animals , Colony Count, Microbial , Food Microbiology/methods , Temperature , Time Factors , United States , Vibrio cholerae/isolation & purification , Vibrio parahaemolyticus/isolation & purification , Vibrio vulnificus/isolation & purification
6.
Appl Environ Microbiol ; 80(20): 6355-65, 2014 Oct.
Article in English | MEDLINE | ID: mdl-25107969

ABSTRACT

A study of prevalence, diversity, and antimicrobial resistance of Salmonella enterica in surface water in the southeastern United States was conducted. A new scheme was developed for recovery of Salmonella from irrigation pond water and compared with the FDA's Bacteriological Analytical Manual (8th ed., 2014) (BAM) method. Fifty-one isolates were recovered from 10 irrigation ponds in produce farms over a 2-year period; nine Salmonella serovars were identified by pulsed-field gel electrophoresis analysis, and the major serovar was Salmonella enterica serovar Newport (S. Newport, n = 29), followed by S. enterica serovar Enteritidis (n = 6), S. enterica serovar Muenchen (n = 4), S. enterica serovar Javiana (n = 3), S. enterica serovar Thompson (n = 2), and other serovars. It is noteworthy that the PulseNet patterns of some of the isolates were identical to those of the strains that were associated with the S. Thompson outbreaks in 2010, 2012, and 2013, S. Enteritidis outbreaks in 2011 and 2013, and an S. Javiana outbreak in 2012. Antimicrobial susceptibility testing confirmed 16 S. Newport isolates of the multidrug resistant-AmpC (MDR-AmpC) phenotype, which exhibited resistance to ampicillin, chloramphenicol, streptomycin, sulfamethoxazole, and tetracycline (ACSSuT), and to the 1st, 2nd, and 3rd generations of cephalosporins (cephalothin, amoxicillin-clavulanic acid, and ceftriaxone). Moreover, the S. Newport MDR-AmpC isolates had a PFGE pattern indistinguishable from the patterns of the isolates from clinical settings. These findings suggest that the irrigation water may be a potential source of contamination of Salmonella in fresh produce. The new Salmonella isolation scheme significantly increased recovery efficiency from 21.2 (36/170) to 29.4% (50/170) (P = 0.0002) and streamlined the turnaround time from 5 to 9 days with the BAM method to 4 days and thus may facilitate microbiological analysis of environmental water.


Subject(s)
Agricultural Irrigation , Salmonella enterica/drug effects , Salmonella enterica/isolation & purification , Anti-Bacterial Agents/pharmacology , Drug Resistance, Multiple, Bacterial , Electrophoresis, Gel, Pulsed-Field , Fresh Water/microbiology , Microbial Sensitivity Tests , Salmonella enterica/classification , Serogroup , Southeastern United States , Spatio-Temporal Analysis , Water Microbiology
7.
J Microbiol Methods ; 101: 86-92, 2014 Jun.
Article in English | MEDLINE | ID: mdl-24732066

ABSTRACT

The 2013 Produce Safety Rules in Food Safety Modernization Act (FSMA) require regular testing for generic Escherichia coli in agricultural water intended for pre-harvest contact with the edible portion of fresh produce. However, the use of fecal contamination indicators frequently does not correctly reflect distribution of foodborne pathogens such as Salmonella enterica, and ensuring food safety may require direct detection and enumeration of pathogens in agricultural settings. Herein we report the evaluation of different cost-effective methods for quantification, isolation, and confirmation of Salmonella in irrigation pond water and sediment samples. A most probably number (MPN) dual enrichment culture method was used in combination with differential and selective agars, XLT4 and CHROMagar™ Salmonella plus (CSP). The necessity for PCR confirmation was evaluated, and methods were compared by cost and performance measures (i.e., sensitivity, specificity, positive predictive value, and negative predictive value). Statistical analyses showed that using XLT4 as the initial selective agar to isolate Salmonella colonies improved recovery compared to CSP agar; however, PCR confirmation was required to avoid false positive results on either agar. Therefore, a novel cross-streaking method utilizing CHROMagar™ agar for individual colony confirmation of Salmonella presence/absence on XLT4 was developed. This method classifies the colony as positive if typical Salmonella appearance is observed on both agars. Statistical analysis showed that this method was as effective as PCR for species confirmation of pure individual strains isolated from enrichment cultures (sensitivity=0.99, specificity=1.00, relative to PCR). This method offers a cost-effective alternative to PCR that would increase the capacity and sensitivity of Salmonella evaluation.


Subject(s)
Agricultural Irrigation , Bacteriological Techniques/methods , Ponds/microbiology , Salmonella/isolation & purification , Culture Media , Polymerase Chain Reaction , Sensitivity and Specificity
8.
Can J Microbiol ; 59(5): 339-46, 2013 May.
Article in English | MEDLINE | ID: mdl-23647347

ABSTRACT

Campylobacter spp., especially Campylobacter jejuni, are common causal agents of gastroenteritis globally. Poultry, contaminated water, and fresh produce are considered to be the main sources for infection by this pathogen. In this study, occurrence and population density of C. jejuni from vegetable irrigation ponds in the Suwannee River watershed were investigated and the relationship to environmental factors was analyzed. Two water samples were collected from each of 10 ponds every month from January 2011 to February 2012. Campylobacter jejuni was detected by quantitative real-time PCR. Nine of the 10 ponds were positive for C. jejuni some of the time with an overall prevalence of 19.3%. The highest counts were obtained in spring 2011. Oxidation-reduction potential and total nitrogen concentration were positively correlated (P < 0.05) with mean population and occurrence of C. jejuni, while temperature and dissolved oxygen percent saturation (DO%) were negatively correlated with mean population (P < 0.05). Presence of this pathogen was related to bacterial community composition. No correlations were found between C. jejuni and fecal indicators. Increasing DO% of irrigation water and limiting nitrogen pollution in the ponds are suggested to reduce the contamination risk of C. jejuni in a major fruit and vegetable growing area.


Subject(s)
Campylobacter jejuni/isolation & purification , Rivers/microbiology , Animals , Campylobacter jejuni/genetics , Denaturing Gradient Gel Electrophoresis , Meat/microbiology , Polymerase Chain Reaction , Ponds/microbiology , Poultry/microbiology , Real-Time Polymerase Chain Reaction , Southeastern United States , Vegetables/microbiology
9.
Can J Microbiol ; 59(3): 175-82, 2013 Mar.
Article in English | MEDLINE | ID: mdl-23540335

ABSTRACT

Outbreaks of enteritis caused by Escherichia coli O157 associated with fresh produce have resulted in questions about the safety of irrigation water; however, associated risks have not been systematically evaluated. In this study, the occurrence and distribution of the human pathogen E. coli O157 from vegetable irrigation ponds within the Suwannee River Watershed in Georgia were investigated, and the relationship to environmental factors was analyzed. Surface and subsurface water samples were collected monthly from 10 vegetable irrigation ponds from March 2011 to February 2012. Escherichia coli O157 was isolated from enriched filtrates on CHROMagar and sorbitol MacConkey agar media and confirmed by an agglutination test. Presence of virulence genes stx1, stx2 , and eae was tested by polymerase chain reaction. In addition, 27 environmental variables of the sampled ponds were measured. Denaturing gradient gel electrophoresis was conducted for the analysis of bacterial communities in the water samples. Biserial correlation coefficients were calculated to evaluate the log10 colony-forming unit per millilitre correlations between the environmental factors and the occurrence of E. coli O157. Stepwise and canonical discriminant analyses were used to determine the factors that were associated with the presence and absence of E. coli O157 in water samples. All 10 ponds were positive for E. coli O157 some of the time, mainly in summer and fall of 2011. The temporal distribution of this bacterium differed among the 10 ponds. Temperature, rainfall, populations of fecal coliform, and culturable bacteria were positively correlated with the occurrence of E. coli O157 (P < 0.05), while the total nitrogen concentration, oxidation-reduction potential, and dissolved oxygen concentration were negatively correlated with the occurrence of this pathogen (P < 0.05). Temperature and rainfall were the most important factors contributing to the discrimination between samples with and without E. coli O157, followed by bacterial diversity and culturable bacteria population density. Bacterial numbers and diversity, including fecal coliforms and E. coli O157, increased after rainfall (and possibly runoff from pond margins) in periods with relatively high temperatures, suggesting that prevention of runoff may be important to minimize the risk of enteric pathogens in irrigation ponds.


Subject(s)
Escherichia coli O157/isolation & purification , Ponds/microbiology , Water Microbiology , Agricultural Irrigation , Bacteria/classification , Bacteria/growth & development , Biodiversity , DNA, Bacterial/chemistry , DNA, Bacterial/isolation & purification , Discriminant Analysis , Electrophoresis, Gel, Two-Dimensional , Enterobacteriaceae/classification , Enterobacteriaceae/growth & development , Escherichia coli O157/genetics , Escherichia coli O157/pathogenicity , Feces/microbiology , Georgia , Humans , Polymerase Chain Reaction , Ponds/chemistry , Rain , Rivers , Seasons , Temperature , Virulence/genetics
10.
Appl Environ Microbiol ; 78(21): 7611-8, 2012 Nov.
Article in English | MEDLINE | ID: mdl-22923394

ABSTRACT

The prevalence of Vibrio vulnificus on the external surfaces of fish from the northern Gulf of Mexico was determined in this study. A collection of 242 fish comprising 28 species was analyzed during the course of 12 sampling trips over a 16-month period. The prevalence of V. vulnificus was 37% but increased up to 69% in summer. A positive correlation was found between the percentages of V. vulnificus-positive fish and water temperatures, while salinity and V. vulnificus-positive fish prevalence were inversely correlated. A general lineal model (percent V. vulnificus-positive fish = 0.5930 - 0.02818 × salinity + 0.01406 × water temperature) was applied to best fit the data. Analysis of the population structure was carried out using 244 isolates recovered from fish. Ascription to 16S rRNA gene types indicated that 157 isolates were type A (62%), 72 (29%) were type B, and 22 (9%) were type AB. The percentage of type B isolates, considered to have greater virulence potential, was higher than that previously reported in oyster samples from the northern Gulf of Mexico. Amplified fragment length polymorphism (AFLP) was used to resolve the genetic diversity within the species. One hundred twenty-one unique AFLP profiles were found among all analyzed isolates, resulting in a calculated Simpson's index of diversity of 0.991. AFLP profiles were not grouped on the basis of collection date, fish species, temperature, or salinity, but isolates were clustered into two main groups that correlated precisely with 16S rRNA gene type. The population of V. vulnificus associated with fishes from the northern Gulf of Mexico is heterogeneous and includes strains of great virulence potential.


Subject(s)
Fishes/microbiology , Vibrio vulnificus/isolation & purification , Amplified Fragment Length Polymorphism Analysis , Animals , Genes, rRNA , Genetic Variation , Gulf of Mexico , RNA, Ribosomal, 16S/analysis , Salinity , Temperature , Vibrio vulnificus/classification , Vibrio vulnificus/genetics , Vibrio vulnificus/pathogenicity
11.
Infect Immun ; 79(3): 1194-207, 2011 Mar.
Article in English | MEDLINE | ID: mdl-21199909

ABSTRACT

Vibrio vulnificus is the leading cause of reported deaths from infections related to consumption of seafood in the United States. Affected predisposed individuals frequently die rapidly from sepsis. Otherwise healthy people can experience severe wound infection, which can lead to sepsis and death. A question is why, with so many people consuming contaminated raw oysters, the incidence of severe V. vulnificus disease is low. Molecular typing systems have shown associations of V. vulnificus genotypes and the environmental or clinical source of the strains, suggesting that different genotypes possess different virulence potentials. We examined 69 V. vulnificus biotype 1 strains that were genotyped by several methods and evaluated them for virulence in a subcutaneously inoculated iron dextran-treated mouse model. By examining the relationships between skin infection, systemic liver infection, and presumptive death (a decrease in body temperature), we determined that liver infection is predicated on severe skin infection and that death requires significant liver infection. Although most strains caused severe skin infection, not every strain caused systemic infection and death. Strains with polymorphisms at multiple loci (rrn, vcg, housekeeping genes, and repetitive DNA) designated profile 2 were more likely to cause lethal systemic infection with more severe indicators of virulence than were profile 1 strains with different polymorphisms at these loci. However, some profile 1 strains were lethal and some profile 2 strains did not cause systemic infection. Therefore, current genotyping schemes cannot strictly predict the virulence of V. vulnificus strains and further investigation is needed to identify virulence genes as markers of virulence.


Subject(s)
Vibrio vulnificus/genetics , Vibrio vulnificus/pathogenicity , Animals , Colony Count, Microbial , Disease Models, Animal , Female , Genotype , Iron-Dextran Complex , Liver Diseases/genetics , Liver Diseases/microbiology , Mice , Mice, Inbred ICR , Polymerase Chain Reaction , Polymorphism, Genetic , Skin Diseases, Bacterial/genetics , Skin Diseases, Bacterial/microbiology , Vibrio Infections/genetics , Vibrio Infections/microbiology , Virulence/genetics
12.
Environ Microbiol Rep ; 3(5): 543-9, 2011 Oct.
Article in English | MEDLINE | ID: mdl-23761333

ABSTRACT

Vibrio vulnificus is a leading cause of shellfish-associated food-borne illness. US regulations stipulate shellfish processing procedures to limit V. vulnificus densities; however, the effect of these procedures on V. vulnificus strain distribution and/or genetic diversity is unknown. Vibrio vulnificus concentrations and strain diversity were analysed in various oyster tissues stored overnight at 26°C that were subsequently divided into two treatment groups: one received post-harvest processing (PHP) via individual quick freeze and one was stored on ice. Vibrio vulnificus densities were 10-fold lower in all PHP-treated tissues compared with untreated tissues. Genetic diversity of V. vulnificus was assessed by BOX-PCR genotyping and was high in all oyster tissues, but was significantly lower in untreated compared with PHP-treated oysters. BOX-PCR discriminated strains into BOX-C (clinical-associated) and BOX-E (environmental-associated) types based on a 1.1 kb DNA band, which correlated well (83% agreement) with 16S rRNA (A/B) typing. A significantly higher proportion of BOX-C isolates were recovered from PHP oysters compared with untreated oysters (24% of all isolates versus 12%) suggesting that BOX-C strains may be more resistant to treatment. These results reveal highly diverse populations of V. vulnificus in oysters with different responses to PHP, emphasizing the need to better understand the organism's ecology and population genetics to optimize food safety practices.

13.
Int J Microbiol ; 2011: 461321, 2011.
Article in English | MEDLINE | ID: mdl-22347228

ABSTRACT

The Suwannee River spans the Florida/Georgia border to the Gulf of Mexico, and contributes to regional irrigation and recreational activities. Association of Salmonella enterica with these resources may result in the contamination of produce and disease outbreaks. Therefore, surface water was examined for the distribution of S. enterica at multiple time points from 4 sites on the upper Suwannee River. Isolates were confirmed by detection of the invA gene, and 96% of all samples were positive for the bacterium. Most probable number enumeration ranged from <18 to 5400 MPN/100 mL. Genetic diversity of these isolates (n=110) was compared to other environmental (n=47) or clinical (n=28) strains and to an online library (n=314) using DiversiLab rep-PCR. All strains showed >60% similarity and distributed into 16 rep-PCR genogroups. Most (74%) of the Suwannee River isolates were clustered into two genogroups that were comprised almost exclusively (97%) of just these isolates. Conversely, 85% of the clinical reference strains clustered into other genogroups. However, some Suwannee River isolates (12%) were clustered with these primarily clinically-associated genogroups, supporting the hypothesis that river water can serve as a disease reservoir and that pathogenic strains may persist or possibly originate from environmental sources.

14.
BMC Genomics ; 11: 512, 2010 Sep 24.
Article in English | MEDLINE | ID: mdl-20863407

ABSTRACT

BACKGROUND: Vibrio vulnificus is the leading cause of reported death from consumption of seafood in the United States. Despite several decades of research on molecular pathogenesis, much remains to be learned about the mechanisms of virulence of this opportunistic bacterial pathogen. The two complete and annotated genomic DNA sequences of V. vulnificus belong to strains of clade 2, which is the predominant clade among clinical strains. Clade 2 strains generally possess higher virulence potential in animal models of disease compared with clade 1, which predominates among environmental strains. SOLiD sequencing of four V. vulnificus strains representing different clades (1 and 2) and biotypes (1 and 2) was used for comparative genomic analysis. RESULTS: Greater than 4,100,000 bases were sequenced of each strain, yielding approximately 100-fold coverage for each of the four genomes. Although the read lengths of SOLiD genomic sequencing were only 35 nt, we were able to make significant conclusions about the unique and shared sequences among the genomes, including identification of single nucleotide polymorphisms. Comparative analysis of the newly sequenced genomes to the existing reference genomes enabled the identification of 3,459 core V. vulnificus genes shared among all six strains and 80 clade 2-specific genes. We identified 523,161 SNPs among the six genomes. CONCLUSIONS: We were able to glean much information about the genomic content of each strain using next generation sequencing. Flp pili, GGDEF proteins, and genomic island XII were identified as possible virulence factors because of their presence in virulent sequenced strains. Genomic comparisons also point toward the involvement of sialic acid catabolism in pathogenesis.


Subject(s)
Genes, Bacterial/genetics , Genomics/methods , Sequence Analysis, DNA/methods , Vibrio vulnificus/genetics , Vibrio vulnificus/pathogenicity , Animals , Base Sequence , Genotype , Mice , Open Reading Frames/genetics , Phenotype , Phylogeny , Plasmids/genetics , Polymorphism, Single Nucleotide/genetics , Reference Standards , Vibrio vulnificus/classification , Virulence/genetics
15.
Microbiology (Reading) ; 156(Pt 12): 3722-3733, 2010 Dec.
Article in English | MEDLINE | ID: mdl-20817642

ABSTRACT

The GacS/GacA two-component signal transduction system regulates virulence, biofilm formation and symbiosis in Vibrio species. The present study investigated this regulatory pathway in Vibrio vulnificus, a human pathogen that causes life-threatening disease associated with the consumption of raw oysters and wound infections. Small non-coding RNAs (csrB1, csrB2, csrB3 and csrC) commonly regulated by the GacS/GacA pathway were decreased (P<0.0003) in a V. vulnificus CMCP6 ΔgacA : : aph mutant compared with the wild-type parent, and expression was restored by complementation of the gacA deletion mutation in trans. Of the 20 genes examined by RT-PCR, significant reductions in the transcript levels of the mutant in comparison with the wild-type strain were observed only for genes related to motility (flaA), stationary phase (rpoS) and protease (vvpE) (P=0.04, 0.01 and 0.002, respectively). Swimming motility, flagellation and opaque colony morphology indicative of capsular polysaccharide (CPS) were unchanged in the mutant, while cytotoxicity, protease activity, CPS phase variation and the ability to acquire iron were decreased compared with the wild-type (P<0.01). The role of gacA in virulence of V. vulnificus was also demonstrated by significant impairment in the ability of the mutant strain to cause either skin (P<0.0005) or systemic infections (P<0.02) in subcutaneously inoculated, non-iron-treated mice. However, the virulence of the mutant was equivalent to that of the wild-type in iron-treated mice, demonstrating that the GacA pathway in V. vulnificus regulates the virulence of this organism in an iron-dependent manner.


Subject(s)
Bacterial Proteins/metabolism , Vibrio Infections/microbiology , Vibrio vulnificus/metabolism , Vibrio vulnificus/pathogenicity , Animals , Bacterial Proteins/genetics , Female , Humans , Iron/metabolism , Mice , Mice, Inbred ICR , Vibrio vulnificus/genetics , Virulence
16.
Appl Environ Microbiol ; 76(14): 4890-5, 2010 Jul.
Article in English | MEDLINE | ID: mdl-20495047

ABSTRACT

Outbreaks of Vibrio vulnificus wound infections in Israel were previously attributed to tilapia aquaculture. In this study, V. vulnificus was frequently isolated from coastal but not freshwater aquaculture in Bangladesh. Phylogenetic analyses showed that strains from Bangladesh differed remarkably from isolates commonly recovered elsewhere from fish or oysters and were more closely related to strains of clinical origin.


Subject(s)
Aquaculture , Fish Diseases/microbiology , Tilapia/microbiology , Vibrio Infections/veterinary , Vibrio vulnificus/classification , Vibrio vulnificus/genetics , Animals , Bacterial Typing Techniques , Bangladesh , Cluster Analysis , DNA Fingerprinting , Genotype , Phylogeny , Polymerase Chain Reaction , Sequence Analysis, DNA , Vibrio Infections/microbiology , Vibrio vulnificus/isolation & purification
17.
Environ Microbiol ; 11(8): 1934-44, 2009 Aug.
Article in English | MEDLINE | ID: mdl-19689704

ABSTRACT

Vibrio vulnificus infections are associated with raw oyster consumption, and disease reservoirs are determined by the ability of this bacterium to infect and persist in oysters. Surface structures, such as capsular polysaccharide (CPS), pili and flagella, function as virulence factors in mouse infection models. Furthermore, virulence is related to phase variation in colony morphology, which reflects CPS expression and includes opaque (encapsulated, virulent), translucent (reduced encapsulation, avirulent) and rugose (wrinkled, biofilm-enhanced) colony types. The role of these factors in environmental survival is unknown; therefore, mutational analysis and phase variation of V. vulnificus were examined in an oyster infection model. Oysters (Crassostrea virginica) were pre-treated with tetracycline to reduce background bacteria and subsequently inoculated via filter feeding with 10(6) colony-forming units (cfu) ml(-1) of V. vulnificus wild-type strains and phase variants, as well as strains with deletion mutations in genes related to CPS (Delta wza), pili (Delta pilA), flagella (Delta flaCDE/Delta flaFBA) and motility (Delta motAB). All mutants were significantly reduced in their dissemination to oyster haemolymph as compared with wild type; however, recovery of mutants from gills and intestinal tissue was generally similar to wild type. Translucent and rugose inocula showed induction of high-frequency phase variation to the opaque encapsulated phenotype (100% and 72% respectively) during oyster infections that did not occur in strains recovered from seawater. Thus, multiple bacterial factors determine uptake of V. vulnificus in oysters, and phase variation during oyster infection is a likely mechanism for environmental survival and for induction of the more virulent phenotype.


Subject(s)
Crassostrea/microbiology , Vibrio vulnificus/pathogenicity , Virulence Factors/physiology , Animals , Bacterial Capsules/genetics , Bacterial Capsules/isolation & purification , Disease Models, Animal , Fimbriae, Bacterial/genetics , Flagella/genetics , Phenotype , Seawater/microbiology , Vibrio vulnificus/isolation & purification , Virulence Factors/genetics , Virulence Factors/isolation & purification
18.
Curr Opin Biotechnol ; 20(2): 185-90, 2009 Apr.
Article in English | MEDLINE | ID: mdl-19342220

ABSTRACT

As the consumption of seafood and shellfish increases around the world, so is the incidence of associated outbreaks of illness. Various postharvest treatments are effective at killing seafood-associated bacteria, but most of these treatments also kill the mollusks. Because consumer preferences for raw live shellfish persist, biological approaches for promoting microbiological safety of live product are being considered. Applications of probiotic bacteria to reduce human pathogens in live shellfish could augment current practices for preharvest monitoring of water quality. Postharvest, biological controls will be important to remove shellfish-associated commensal Vibrio spp. that are pathogenic to humans. Further investigations will reveal whether combining depuration with chemical disruption of bacterial attachment or cell-to-cell signaling may accomplish this goal.


Subject(s)
Food Microbiology , Foodborne Diseases/microbiology , Foodborne Diseases/prevention & control , Shellfish/microbiology , Animals , Bacteriophages , Humans , Vibrio/metabolism , Vibrio/pathogenicity , Vibrio/virology
20.
Curr Opin Biotechnol ; 20(2): 172-7, 2009 Apr.
Article in English | MEDLINE | ID: mdl-19372038

ABSTRACT

Recent Salmonella outbreaks associated with consumption of fresh produce have increased public concern for the safety of raw food products, perhaps signaling a paradigm shift in approaches to food safety. Limitations to our capacity to ensure that raw foods are safe for the consumer include the availability of sufficiently rapid and reliable technology for prevention, intervention, and risk assessment. Other food products, such as shellfish, with greater historical precedent for real or perceived public health risk may offer perspective and insight into strategies for meeting these challenges. This review documents current practices for pathogen prevention and detection in raw oysters and presents technological advances and impediments that determine the application of these methods.


Subject(s)
Food Handling/methods , Food Microbiology , Animals , Consumer Product Safety , Disease Outbreaks , Food-Processing Industry/standards , Foodborne Diseases/prevention & control , Ostreidae/microbiology
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